FFCP PHASE1:Hg19::chr1:94374914..94374922,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2730|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4312|TSSclassifier=S|UniProt=P48507|association_with_transcript=43bp_to_ENST00000370238_5end|coexpression_cluster_id=C1426|description=CAGE_peak_7_at_GCLM_5end|id=chr1:94374914..94374922,-|ontology_enrichment_celltype=CL:0000548!1.91e-18!679;CL:0000004!1.91e-18!679;CL:0000255!1.91e-18!679;CL:0000012!4.20e-18!682;CL:0000144!3.59e-15!625;CL:0002371!1.37e-12!591;CL:0000003!8.02e-11!722;CL:0000055!1.02e-08!180;CL:0000063!1.09e-07!578;CL:0000048!2.51e-07!430;CL:0002057!3.26e-07!42;CL:0000222!4.99e-07!119;CL:0000860!5.13e-07!45;CL:0000034!5.33e-07!444|ontology_enrichment_celltype_v019=CL:0000860;4.65e-18;33!CL:0002057;4.65e-18;33!CL:0000473;2.77e-11;39!CL:0000234;2.77e-11;39!CL:0000499;3.77e-10;28!CL:0000327;3.93e-08;15!CL:0000153;8.90e-08;9!CL:0000447;8.90e-08;9!CL:0000576;1.42e-07;48|ontology_enrichment_celltype_v019_2=CL:0000860,2.36e-14,42;CL:0002057,2.36e-14,42;CL:0000473,1.32e-11,48;CL:0000234,1.32e-11,48;CL:0000499,2.82e-10,28;CL:0000048,6.34e-09,427;CL:0000839,8.49e-09,66;CL:0002194,9.43e-09,59;CL:0000576,9.43e-09,59;CL:0000040,9.43e-09,59;CL:0000559,9.43e-09,59;CL:0000723,1.88e-08,433;CL:0000327,2.40e-08,15;CL:0000034,3.01e-08,441;CL:0002009,3.06e-08,61;CL:0000153,5.80e-08,9;CL:0000447,5.80e-08,9;CL:0000557,6.53e-07,67|ontology_enrichment_development_v019=CL:0002057;2.42e-10;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002204!3.34e-09!167;UBERON:0002049!5.72e-07!79;UBERON:0007798!5.72e-07!79;UBERON:0000926!6.76e-07!448;UBERON:0004120!6.76e-07!448;UBERON:0006603!6.76e-07!448|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002204,4.43e-09,167;UBERON:0002371,1.97e-07,76;UBERON:0001434,2.77e-07,100;UBERON:0001474,4.83e-07,82;UBERON:0004765,5.73e-07,90;UBERON:0002405,8.42e-07,93|phase1_expression=0.363356758541113,0.214100523890983,0.563817616383885,1.0007329835313,0,0.872338524100369,2.53299878168311,0.631719873426831,0,0.737201809504527,0,0,0,0.866364470720326,1.65698687863958,1.34465029290355,0,1.46062018077475,0.975865597581014,0.123121058076788,0.204000691244253,0.940364164434263,0.286235987131057,0.821246550437305,0.251085279189606,0.0764134057479513,0.164201178899891,0,0,0,0.309632246632152,0,0.30120591877825,0,0.0774672005803016,0,0,0.553995408531877,0,0.217010870715852,0,0.32389366601898,0.257575567634187,0.581592955118259,1.51150377475524,0.242584061187816,0.697287110717054,1.6446715520873,0.929119112685311,6.04154023876516,5.63553554364021,5.91205574721463,1.03423704220986,0.645484683583826,1.35426486594342,0.376484679085209,2.72906150057846,1.57306439111559,1.83650335422542,1.28371610830437,1.27867425159808,3.95821560224059,10.7710375115681,5.11469700639233,1.16083695451434,6.80862269629368,3.73693349397345,8.29120595347253,7.82224377630302,6.95004303056373,4.23779651843358,3.31449872388808,3.48108626184973,0,0,0,0,0,0.16072558669708,0,0,0,0,0.546138611262131,0,0,0.400395987036012,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.25618263945135,0.390178042679635,0,0,0,0.14828656316206,0,0,0.113309342697566,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0.670700859703636,0.511450247374121,3.2529523714611,2.50668955317945,3.76600949298142,1.5905718941022,2.43317435151318,0.378139268656271,0.886917589850256,0.527008714158756,0.0654895377488563,0,0.370784442784429,0.649094787309367,0.174129737299267,0.531831842075461,0,0,0,1.19257444420023,0.860234595106124,0.347140501607594,1.13061588384802,1.25849830862972,1.10047216776027,1.04497483268405,1.03366703667732,0.35576626268671,1.00416183829401,0.402829317109147,0,0.732186172644509,0.367663080345869,0,0.625098097988558,1.12264686313085,1.57656072676651,0,0.949265659568129,0.549605231791222,0,0,0.436094052142534,0,0.506522046658319,0.662045904066094,0.286836620748814,1.06400514659507,0,0,0,1.24484414159907,0.808264032418128,0.163461903113459,0.908144565869588,1.15235184896,0,0.624320153660641,0,0.448346041655403,0.587172493218824,1.13311061057692,0.842704840213491,0.61246251376468,0.737005903870608,1.13658359293342,1.18800285728205,0.989067717114227,0.910161361938026,2.15585442544872,0.336672227908132,1.00094815897571,0.831192346452549,0.877955241761676,0.30648779579902,0.45071417671979,0.907457465280168,0.179389635688862,0.427114777637135,1.05965950579781,0,0.412210116953756,0,0.558350568994769,0.506328996723799,0.292311015483596,0,1.10459878370759,0,0,0.403008392910561,0.847802961552438,0.193260853163297,1.36373060295417,0.573609190778008,0.853815942907168,1.32529768321485,0.232387885739037,0.518305275076852,0.756962552626885,0,0,1.28648187638577,1.38134921352481,0.464367928031979,0,0.236613600079688,0,0,0.330881918197182,0.217879444092406,0.237270619111097,0.269662616320329,0.392442930250692,0,0,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0.857839051492628,0.219500570817251,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2730 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4312 | |||
|TSSclassifier=S | |||
|UniProt=P48507 | |||
|association_with_transcript=43bp_to_ENST00000370238_5end | |||
|coexpression_cluster_id=C1426 | |||
|description=CAGE_peak_7_at_GCLM_5end | |||
|id=chr1:94374914..94374922,- | |||
|ontology_enrichment_celltype=CL:0000548!1.91e-18!679;CL:0000004!1.91e-18!679;CL:0000255!1.91e-18!679;CL:0000012!4.20e-18!682;CL:0000144!3.59e-15!625;CL:0002371!1.37e-12!591;CL:0000003!8.02e-11!722;CL:0000055!1.02e-08!180;CL:0000063!1.09e-07!578;CL:0000048!2.51e-07!430;CL:0002057!3.26e-07!42;CL:0000222!4.99e-07!119;CL:0000860!5.13e-07!45;CL:0000034!5.33e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.65e-18;33!CL:0002057;4.65e-18;33!CL:0000473;2.77e-11;39!CL:0000234;2.77e-11;39!CL:0000499;3.77e-10;28!CL:0000327;3.93e-08;15!CL:0000153;8.90e-08;9!CL:0000447;8.90e-08;9!CL:0000576;1.42e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.36e-14,42;CL:0002057,2.36e-14,42;CL:0000473,1.32e-11,48;CL:0000234,1.32e-11,48;CL:0000499,2.82e-10,28;CL:0000048,6.34e-09,427;CL:0000839,8.49e-09,66;CL:0002194,9.43e-09,59;CL:0000576,9.43e-09,59;CL:0000040,9.43e-09,59;CL:0000559,9.43e-09,59;CL:0000723,1.88e-08,433;CL:0000327,2.40e-08,15;CL:0000034,3.01e-08,441;CL:0002009,3.06e-08,61;CL:0000153,5.80e-08,9;CL:0000447,5.80e-08,9;CL:0000557,6.53e-07,67 | |||
|ontology_enrichment_development_v019=CL:0002057;2.42e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!3.34e-09!167;UBERON:0002049!5.72e-07!79;UBERON:0007798!5.72e-07!79;UBERON:0000926!6.76e-07!448;UBERON:0004120!6.76e-07!448;UBERON:0006603!6.76e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,4.43e-09,167;UBERON:0002371,1.97e-07,76;UBERON:0001434,2.77e-07,100;UBERON:0001474,4.83e-07,82;UBERON:0004765,5.73e-07,90;UBERON:0002405,8.42e-07,93 | |||
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| |||
|short_description=p7@GCLM | |||
}} |
Revision as of 07:17, 12 September 2013
Short description: | p7@GCLM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_GCLM_5end |
Coexpression cluster: | C1426_CD14_bile_mucinous_lung_large_glioblastoma_nonsmall |
Association with transcript: | 43bp_to_ENST00000370238_5end |
EntrezGene: | GCLM |
HGNC: | 4312 |
UniProt: | P48507 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.36e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.36e-14 | 42 |
defensive cell | 1.32e-11 | 48 |
phagocyte | 1.32e-11 | 48 |
stromal cell | 2.82e-10 | 28 |
multi fate stem cell | 6.34e-09 | 427 |
myeloid lineage restricted progenitor cell | 8.49e-09 | 66 |
monopoietic cell | 9.43e-09 | 59 |
monocyte | 9.43e-09 | 59 |
monoblast | 9.43e-09 | 59 |
promonocyte | 9.43e-09 | 59 |
somatic stem cell | 1.88e-08 | 433 |
extracellular matrix secreting cell | 2.40e-08 | 15 |
stem cell | 3.01e-08 | 441 |
macrophage dendritic cell progenitor | 3.06e-08 | 61 |
GAG secreting cell | 5.80e-08 | 9 |
carbohydrate secreting cell | 5.80e-08 | 9 |
granulocyte monocyte progenitor cell | 6.53e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 4.43e-09 | 167 |
bone marrow | 1.97e-07 | 76 |
skeletal system | 2.77e-07 | 100 |
bone element | 4.83e-07 | 82 |
skeletal element | 5.73e-07 | 90 |
immune system | 8.42e-07 | 93 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.