FFCP PHASE1:Hg19::chr20:6104217..6104228,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55612|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15889|TSSclassifier=S|UniProt=Q9BQL6,F8W9F0,Q49AC8,Q54A15|association_with_transcript=-26bp_to_ENST00000217289,ENST00000339538,NM_017671,uc002wmr.2,uc002wms.2,uc010gbt.2_5end|description=CAGE_peak_13_at_FERMT1_5end|id=chr20:6104217..6104228,-|ontology_enrichment_celltype=CL:0000066!4.52e-33!254;CL:0000223!9.51e-20!59;CL:0002076!1.81e-18!43;CL:0002251!2.06e-11!21;CL:0002368!5.96e-07!13|ontology_enrichment_celltype_v019=CL:0002327;4.80e-12;4|ontology_enrichment_celltype_v019_2=CL:0000066,1.73e-13,253;CL:0002327,3.49e-12,4;CL:0000223,3.35e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!1.70e-25!106;DOID:0050687!1.71e-21!143;DOID:1749!5.95e-13!14;DOID:162!8.92e-12!235;DOID:14566!1.45e-11!239|ontology_enrichment_disease_v019=DOID:1749;1.45e-17;14!DOID:0050619;7.33e-07;1!DOID:1357;7.33e-07;1|ontology_enrichment_disease_v019_2=DOID:1749,2.30e-17,14;DOID:305,1.37e-13,106;DOID:0050687,5.26e-09,143;DOID:0050619,5.90e-07,1;DOID:1357,5.90e-07,1|ontology_enrichment_uberon=UBERON:0004119!1.71e-20!169;UBERON:0000925!1.71e-20!169;UBERON:0006595!1.71e-20!169;UBERON:0001007!4.18e-16!155;UBERON:0001555!4.18e-16!155;UBERON:0007026!4.18e-16!155;UBERON:0004921!8.32e-14!129;UBERON:0004185!8.32e-14!129;UBERON:0000077!8.77e-13!130;UBERON:0000344!5.56e-10!12;UBERON:0000160!2.00e-08!27;UBERON:0002075!4.43e-08!18;UBERON:0000466!1.09e-07!126;UBERON:0001004!1.10e-07!72;UBERON:0000161!1.16e-07!35;UBERON:0001041!1.22e-07!98;UBERON:0005409!1.33e-07!35;UBERON:0003729!1.70e-07!5;UBERON:0000464!3.07e-07!104;UBERON:0005911!3.16e-07!82;UBERON:0001045!9.06e-07!11|ontology_enrichment_uberon_v019=UBERON:0001911;4.80e-12;4!UBERON:0000365;5.42e-10;5!UBERON:0005910;2.12e-08;6!UBERON:0001764;7.33e-07;1!UBERON:0001825;7.33e-07;1!UBERON:0002365;7.50e-07;31!UBERON:0002330;7.50e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0001911,3.49e-12,4;UBERON:0005333,3.49e-12,4;UBERON:0008425,3.49e-12,4;UBERON:0005311,3.49e-12,4;UBERON:0000365,2.43e-10,5;UBERON:0004119,1.39e-09,160;UBERON:0000925,1.39e-09,160;UBERON:0006595,1.39e-09,160;UBERON:0005910,1.09e-08,6;UBERON:0005153,7.96e-08,37;UBERON:0004921,1.20e-07,118;UBERON:0001007,1.63e-07,145;UBERON:0001555,1.63e-07,145;UBERON:0007026,1.63e-07,145;UBERON:0002365,1.76e-07,31;UBERON:0002330,1.76e-07,31;UBERON:0005157,1.80e-07,47;UBERON:0001764,5.90e-07,1;UBERON:0001825,5.90e-07,1;UBERON:0005911,6.30e-07,82|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0.697801167972428,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.966304265816484,0.818238361772504,0,0.121973706129595,0.530119073285941,0.464775771478074,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0,0.674338760312407,0,0.110293972732394,0,0,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0.491953754172454,0,0.768251997860379,1.1240175325762,0.703702806881416,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.708875486211932,1.70161193135412,1.45316969256981,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0.246381468041427,0,0,0.966875596732978,1.20303882181971,0.184161977871793,0,0,0,0,0.616122696835318,0.784349769176855,0,0.527758144464379,0,0,0.215915916102139,0,0,0,0.764628819135115,0,0.447749509444357,0,0,0,0,0,0,0,0,1.72279661398852,0,0,0,0,0,0.137836572484531,0,0,0,0.0890320356467374,0.826424576804891,0.192190067365106,2.16941611240793,0.4046311234222,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,1.82822014178473,0.670302275535787,0,0.188287601553558,1.72202149068492,0,0.443430153536676,2.75668080248351,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24568648489864,0,0,0.111443384277478,0,0,0,0.307160702099232,0,0,0.111308705022906,0,0.63337622438398,0,1.10513566212459,0.503865495708552,0,0.246169610922139,0,0.808815160325942,0.716084698702437,0,0.295930216910801,0,0,0,0,0,0,0,0,1.2517279311405,0,0,0,0,0,0,0,0,0,0,0,0,1.11538995422883,0.153900517007594,0,0.23056390438806,0.807818799687949,0.325942115766024,0,0.0915975934018623,0,0,0,0,0,0,0,0,0.158936578980379,0.210998064528027,0.652931232636591,0.706765357169704,0,0.995261931078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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55612 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15889 | |||
|TSSclassifier=S | |||
|UniProt=Q9BQL6,F8W9F0,Q49AC8,Q54A15 | |||
|association_with_transcript=-26bp_to_ENST00000217289,ENST00000339538,NM_017671,uc002wmr.2,uc002wms.2,uc010gbt.2_5end | |||
|description=CAGE_peak_13_at_FERMT1_5end | |||
|id=chr20:6104217..6104228,- | |||
|ontology_enrichment_celltype=CL:0000066!4.52e-33!254;CL:0000223!9.51e-20!59;CL:0002076!1.81e-18!43;CL:0002251!2.06e-11!21;CL:0002368!5.96e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002327;4.80e-12;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.73e-13,253;CL:0002327,3.49e-12,4;CL:0000223,3.35e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.70e-25!106;DOID:0050687!1.71e-21!143;DOID:1749!5.95e-13!14;DOID:162!8.92e-12!235;DOID:14566!1.45e-11!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.45e-17;14!DOID:0050619;7.33e-07;1!DOID:1357;7.33e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.30e-17,14;DOID:305,1.37e-13,106;DOID:0050687,5.26e-09,143;DOID:0050619,5.90e-07,1;DOID:1357,5.90e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.71e-20!169;UBERON:0000925!1.71e-20!169;UBERON:0006595!1.71e-20!169;UBERON:0001007!4.18e-16!155;UBERON:0001555!4.18e-16!155;UBERON:0007026!4.18e-16!155;UBERON:0004921!8.32e-14!129;UBERON:0004185!8.32e-14!129;UBERON:0000077!8.77e-13!130;UBERON:0000344!5.56e-10!12;UBERON:0000160!2.00e-08!27;UBERON:0002075!4.43e-08!18;UBERON:0000466!1.09e-07!126;UBERON:0001004!1.10e-07!72;UBERON:0000161!1.16e-07!35;UBERON:0001041!1.22e-07!98;UBERON:0005409!1.33e-07!35;UBERON:0003729!1.70e-07!5;UBERON:0000464!3.07e-07!104;UBERON:0005911!3.16e-07!82;UBERON:0001045!9.06e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0001911;4.80e-12;4!UBERON:0000365;5.42e-10;5!UBERON:0005910;2.12e-08;6!UBERON:0001764;7.33e-07;1!UBERON:0001825;7.33e-07;1!UBERON:0002365;7.50e-07;31!UBERON:0002330;7.50e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,3.49e-12,4;UBERON:0005333,3.49e-12,4;UBERON:0008425,3.49e-12,4;UBERON:0005311,3.49e-12,4;UBERON:0000365,2.43e-10,5;UBERON:0004119,1.39e-09,160;UBERON:0000925,1.39e-09,160;UBERON:0006595,1.39e-09,160;UBERON:0005910,1.09e-08,6;UBERON:0005153,7.96e-08,37;UBERON:0004921,1.20e-07,118;UBERON:0001007,1.63e-07,145;UBERON:0001555,1.63e-07,145;UBERON:0007026,1.63e-07,145;UBERON:0002365,1.76e-07,31;UBERON:0002330,1.76e-07,31;UBERON:0005157,1.80e-07,47;UBERON:0001764,5.90e-07,1;UBERON:0001825,5.90e-07,1;UBERON:0005911,6.30e-07,82 | |||
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|short_description=p13@FERMT1 | |||
}} |
Revision as of 09:31, 12 September 2013
Short description: | p13@FERMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_FERMT1_5end |
Coexpression cluster: | NA |
Association with transcript: | -26bp_to_ENST00000217289, ENST00000339538, NM_017671, uc002wmr.2, uc002wms.2, uc010gbt.2_5end |
EntrezGene: | FERMT1 |
HGNC: | 15889 |
UniProt: | Q9BQL6F8W9F0Q49AC8Q54A15 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.73e-13 | 253 |
mammary gland epithelial cell | 3.49e-12 | 4 |
endodermal cell | 3.35e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
mammary gland | 3.49e-12 | 4 |
mammary bud | 3.49e-12 | 4 |
mammary ridge | 3.49e-12 | 4 |
mammary placode | 3.49e-12 | 4 |
urothelium | 2.43e-10 | 5 |
endoderm-derived structure | 1.39e-09 | 160 |
endoderm | 1.39e-09 | 160 |
presumptive endoderm | 1.39e-09 | 160 |
transitional epithelium | 1.09e-08 | 6 |
epithelial bud | 7.96e-08 | 37 |
subdivision of digestive tract | 1.20e-07 | 118 |
digestive system | 1.63e-07 | 145 |
digestive tract | 1.63e-07 | 145 |
primitive gut | 1.63e-07 | 145 |
exocrine gland | 1.76e-07 | 31 |
exocrine system | 1.76e-07 | 31 |
epithelial fold | 1.80e-07 | 47 |
maxillary sinus | 5.90e-07 | 1 |
paranasal sinus | 5.90e-07 | 1 |
endo-epithelium | 6.30e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.30e-17 | 14 |
carcinoma | 1.37e-13 | 106 |
cell type cancer | 5.26e-09 | 143 |
paranasal sinus cancer | 5.90e-07 | 1 |
maxillary sinus cancer | 5.90e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.