FFCP PHASE1:Hg19::chr21:38071430..38071456,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6493|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10883|TSSclassifier=S|UniProt=Q14190|association_with_transcript=0bp_to_ENST00000290399,ENST00000460783,ENST00000481185_5end|coexpression_cluster_id=C2630|description=CAGE_peak_1_at_SIM2_5end|id=chr21:38071430..38071456,+|ontology_enrichment_celltype=CL:0000066!3.40e-13!254|ontology_enrichment_celltype_v019=CL:1000507;9.10e-09;10!CL:1000494;9.10e-09;10!CL:0000153;2.13e-07;9!CL:0000447;2.13e-07;9!CL:0000077;3.88e-07;19|ontology_enrichment_celltype_v019_2=CL:0000066,1.47e-16,253;CL:1000507,1.11e-08,10;CL:1000494,1.11e-08,10;CL:0000153,2.71e-07,9;CL:0000447,2.71e-07,9;CL:0000077,4.03e-07,19|ontology_enrichment_development_v019=UBERON:0008947;2.68e-07;29|ontology_enrichment_disease=DOID:0050687!4.51e-27!143;DOID:305!1.21e-26!106;DOID:162!7.73e-20!235;DOID:14566!2.00e-18!239;DOID:299!2.32e-11!25|ontology_enrichment_disease_v019=DOID:299;6.10e-14;25!DOID:305;7.89e-09;106!DOID:3119;3.71e-07;14|ontology_enrichment_disease_v019_2=DOID:0050687,2.38e-28,143;DOID:305,8.64e-28,106;DOID:162,3.93e-22,235;DOID:14566,5.69e-21,239;DOID:299,4.17e-14,25;DOID:3119,5.47e-07,14|ontology_enrichment_uberon=UBERON:0003104!1.14e-17!238;UBERON:0009142!1.14e-17!238;UBERON:0000481!1.85e-13!347;UBERON:0002100!3.22e-12!216;UBERON:0005256!3.36e-09!143;UBERON:0005177!4.95e-09!107;UBERON:0001007!2.87e-08!155;UBERON:0001555!2.87e-08!155;UBERON:0007026!2.87e-08!155;UBERON:0000475!3.26e-08!365;UBERON:0000077!3.50e-08!130;UBERON:0001041!1.01e-07!98;UBERON:0000926!1.14e-07!448;UBERON:0004120!1.14e-07!448;UBERON:0006603!1.14e-07!448;UBERON:0000466!1.25e-07!126;UBERON:0000464!1.81e-07!104;UBERON:0004921!2.18e-07!129;UBERON:0004185!2.18e-07!129;UBERON:0000072!2.25e-07!46;UBERON:0003064!2.26e-07!37;UBERON:0004119!2.40e-07!169;UBERON:0000925!2.40e-07!169;UBERON:0006595!2.40e-07!169|ontology_enrichment_uberon_v019=UBERON:0004211;9.10e-09;10!UBERON:0009773;9.10e-09;10!UBERON:0001231;9.10e-09;10!UBERON:0004810;9.10e-09;10!UBERON:0001737;1.70e-08;9!UBERON:0001557;1.70e-08;9!UBERON:0002113;3.35e-07;24!UBERON:0011143;3.35e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.20e-12,199;UBERON:0003104,1.77e-11,160;UBERON:0009142,1.77e-11,160;UBERON:0004810,1.11e-08,10;UBERON:0005177,1.16e-08,101;UBERON:0001737,2.21e-08,9;UBERON:0000072,3.67e-07,47;UBERON:0001557,7.84e-07,19|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.261185628199839,3.44027511102112,0,0,0,3.34169152992126,3.64537113300707,51.0967111303349,69.3098707227573,54.773256779053,56.6002046596988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,4.84319602106695,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1686349143074,3.50936537445123,1.44846518960824,3.1811437882044,3.40644409211845,0,0,0.175669571386252,4.25681995367566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,1.49091585508596,20.2608818663328,0.529636723252875,1.43418310374407,0,0.560677600142307,87.5341764983581,11.5933747756065,0,0,0,0,0,0,0,0,0,0.822041490506354,0.647491777472526,1.12360645361799,0,0.982674538494144,0,0,0.494533858557114,0,0,0.841680569770331,0.375355559615893,0,0.438977620880838,0,0,0.113432183160021,0,0,0,0.300091096084402,0.309157587715317,0.257640540045629,0,0.843881661206331,0.779496041289589,0,0,0,0,0,0.169560592310488,0.193260853163297,0,6.02289650316908,0,0,0,0,0,0,0,0,0,0,0.721879481669586,4.96888560167344,5.05754070234305,6.02527574708705,5.18381671842252,5.22910665821775,4.27087114399974,4.1797705529651,3.33576490713088,5.38646019724947,0,5.60967095213783,0,0,0,0,0,0,2.33678033231916,0,0,0,0,5.83307204498736,0.325808305310325,0,0,0,0.939269553886573,0,0,0,3.95102198979638,3.43394464837949,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.414656231081544,0.288239906833923,0.12624243342638,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0.823240336780769,0,0,0,0.301439377059586,0,0.399891964728228,0,0,0,0,0,0,0,1.2328579353023,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,4.2942022101699,3.00102312635806,1.08506009479894,0,0,0,0,0,0,0,2.65690239414175,0.553107505625109,0,0.783204629850962,0.343143423810856,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0.804269605718038,0,0.154209693802656,1.24293207719189,0.0821271560138091,4.15403543346897,0.348631135379878,3.38406458856542,3.20810352485256,9.9447468050768,0.114814448164607,0,0,12.1823895485001,4.00479752942957,23.5304930753057,16.0753147118587,7.17751076471555,0,0,0.215915916102139,1.54227252690289,0,4.01351819083883,18.3510916592428,6.64860807142979,12.3131115097198,0,0,0,0,0,1.44257416306811,0,0,0,0,1.6068392984416,3.57681657680851,0.154048617114644,0,0.413509717453592,0.107420244868274,0,0.170453254832202,1.33548053470106,0,0,0,0.2023155617111,0,0,1.3940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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6493 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10883 | |||
|TSSclassifier=S | |||
|UniProt=Q14190 | |||
|association_with_transcript=0bp_to_ENST00000290399,ENST00000460783,ENST00000481185_5end | |||
|coexpression_cluster_id=C2630 | |||
|description=CAGE_peak_1_at_SIM2_5end | |||
|id=chr21:38071430..38071456,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.40e-13!254 | |||
|ontology_enrichment_celltype_v019=CL:1000507;9.10e-09;10!CL:1000494;9.10e-09;10!CL:0000153;2.13e-07;9!CL:0000447;2.13e-07;9!CL:0000077;3.88e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.47e-16,253;CL:1000507,1.11e-08,10;CL:1000494,1.11e-08,10;CL:0000153,2.71e-07,9;CL:0000447,2.71e-07,9;CL:0000077,4.03e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.68e-07;29 | |||
|ontology_enrichment_disease=DOID:0050687!4.51e-27!143;DOID:305!1.21e-26!106;DOID:162!7.73e-20!235;DOID:14566!2.00e-18!239;DOID:299!2.32e-11!25 | |||
|ontology_enrichment_disease_v019=DOID:299;6.10e-14;25!DOID:305;7.89e-09;106!DOID:3119;3.71e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.38e-28,143;DOID:305,8.64e-28,106;DOID:162,3.93e-22,235;DOID:14566,5.69e-21,239;DOID:299,4.17e-14,25;DOID:3119,5.47e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.14e-17!238;UBERON:0009142!1.14e-17!238;UBERON:0000481!1.85e-13!347;UBERON:0002100!3.22e-12!216;UBERON:0005256!3.36e-09!143;UBERON:0005177!4.95e-09!107;UBERON:0001007!2.87e-08!155;UBERON:0001555!2.87e-08!155;UBERON:0007026!2.87e-08!155;UBERON:0000475!3.26e-08!365;UBERON:0000077!3.50e-08!130;UBERON:0001041!1.01e-07!98;UBERON:0000926!1.14e-07!448;UBERON:0004120!1.14e-07!448;UBERON:0006603!1.14e-07!448;UBERON:0000466!1.25e-07!126;UBERON:0000464!1.81e-07!104;UBERON:0004921!2.18e-07!129;UBERON:0004185!2.18e-07!129;UBERON:0000072!2.25e-07!46;UBERON:0003064!2.26e-07!37;UBERON:0004119!2.40e-07!169;UBERON:0000925!2.40e-07!169;UBERON:0006595!2.40e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;9.10e-09;10!UBERON:0009773;9.10e-09;10!UBERON:0001231;9.10e-09;10!UBERON:0004810;9.10e-09;10!UBERON:0001737;1.70e-08;9!UBERON:0001557;1.70e-08;9!UBERON:0002113;3.35e-07;24!UBERON:0011143;3.35e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.20e-12,199;UBERON:0003104,1.77e-11,160;UBERON:0009142,1.77e-11,160;UBERON:0004810,1.11e-08,10;UBERON:0005177,1.16e-08,101;UBERON:0001737,2.21e-08,9;UBERON:0000072,3.67e-07,47;UBERON:0001557,7.84e-07,19 | |||
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| |||
|short_description=p1@SIM2 | |||
}} |
Revision as of 10:17, 12 September 2013
Short description: | p1@SIM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SIM2_5end |
Coexpression cluster: | C2630_extraskeletal_Fibroblast_Smooth_Aortic_mesothelioma_prostate_small |
Association with transcript: | 0bp_to_ENST00000290399, ENST00000460783, ENST00000481185_5end |
EntrezGene: | SIM2 |
HGNC: | 10883 |
UniProt: | Q14190 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.47e-16 | 253 |
kidney tubule cell | 1.11e-08 | 10 |
nephron tubule epithelial cell | 1.11e-08 | 10 |
GAG secreting cell | 2.71e-07 | 9 |
carbohydrate secreting cell | 2.71e-07 | 9 |
mesothelial cell | 4.03e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.20e-12 | 199 |
mesenchyme | 1.77e-11 | 160 |
entire embryonic mesenchyme | 1.77e-11 | 160 |
nephron tubule epithelium | 1.11e-08 | 10 |
trunk region element | 1.16e-08 | 101 |
larynx | 2.21e-08 | 9 |
segment of respiratory tract | 3.67e-07 | 47 |
upper respiratory tract | 7.84e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.38e-28 | 143 |
carcinoma | 8.64e-28 | 106 |
cancer | 3.93e-22 | 235 |
disease of cellular proliferation | 5.69e-21 | 239 |
adenocarcinoma | 4.17e-14 | 25 |
gastrointestinal system cancer | 5.47e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.