FFCP PHASE1:Hg19::chr2:136577861..136577876,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=100507600|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=100bp_to_ENST00000437007,NR_045486,uc002tuv.1_5end|coexpression_cluster_id=C46|description=CAGE_peak_1_at_LOC100507600_5end|id=chr2:136577861..136577876,+|ontology_enrichment_celltype=CL:0000988!1.55e-10!182;CL:0000037!3.67e-10!172;CL:0000566!3.67e-10!172;CL:0002032!1.11e-08!165;CL:0000837!1.11e-08!165;CL:0000838!1.85e-08!52;CL:0000542!3.20e-08!53;CL:0000051!3.20e-08!53;CL:0000064!4.75e-08!3;CL:0005012!4.75e-08!3;CL:0000067!4.75e-08!3;CL:0002304!4.75e-08!3;CL:0000084!2.80e-07!25;CL:0000827!2.80e-07!25|ontology_enrichment_celltype_v019=CL:0000064;1.36e-11;3!CL:0000067;1.36e-11;3!CL:0005012;1.36e-11;3!CL:0002304;1.36e-11;3!CL:0000228;1.83e-09;1!CL:0002372;1.83e-09;1!CL:0000084;5.54e-08;25|ontology_enrichment_celltype_v019_2=CL:0000064,1.10e-11,3;CL:0000067,1.10e-11,3;CL:0005012,1.10e-11,3;CL:0002304,1.10e-11,3;CL:0000228,1.69e-09,1;CL:0002372,1.69e-09,1;CL:0000838,7.63e-09,52;CL:0000542,1.17e-08,53;CL:0000051,1.17e-08,53;CL:0000084,5.58e-08,25;CL:0000827,5.58e-08,25;CL:0000037,8.93e-07,168|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:1240!2.78e-18!39;DOID:2531!1.34e-17!51;DOID:0060083!1.34e-17!51;DOID:8692!7.50e-11!31|ontology_enrichment_disease_v019=DOID:630;1.49e-09;1!DOID:0050177;1.49e-09;1!DOID:0050427;1.49e-09;1!DOID:0060060;3.53e-09;1!DOID:0060061;3.53e-09;1!DOID:8691;3.53e-09;1!DOID:1240;2.26e-07;39!DOID:2531;4.00e-07;51!DOID:0060083;4.00e-07;51|ontology_enrichment_disease_v019_2=DOID:2531,1.74e-11,51;DOID:0060083,1.74e-11,51;DOID:630,1.43e-09,1;DOID:0050177,1.43e-09,1;DOID:0050427,1.43e-09,1;DOID:1240,2.34e-09,39;DOID:0060060,2.77e-09,1;DOID:0060061,2.77e-09,1;DOID:8691,2.77e-09,1|ontology_enrichment_uberon=UBERON:0000488!8.88e-10!4;UBERON:0001778!4.75e-08!3;UBERON:0001775!4.75e-08!3;UBERON:0002384!3.29e-07!375|ontology_enrichment_uberon_v019=UBERON:0002370;9.84e-18;2!UBERON:0005058;9.84e-18;2!UBERON:0009113;9.84e-18;2!UBERON:0001778;1.36e-11;3!UBERON:0001775;1.36e-11;3!UBERON:0000488;6.46e-09;4!UBERON:0004177;1.28e-07;5!UBERON:0005057;1.28e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.10e-11,3;UBERON:0001775,1.10e-11,3;UBERON:0002370,2.55e-09,4;UBERON:0005058,2.55e-09,4;UBERON:0009113,2.55e-09,4;UBERON:0003295,2.55e-09,4;UBERON:0005562,2.55e-09,4;UBERON:0000488,5.51e-09,4;UBERON:0000974,5.33e-08,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.687720651731561,1.31360943119913,1.18066171970519,0,0,0,0,0,0,0,0,0.880801318004542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552700035571697,0.289803085735052,0.14828656316206,0,0,0,0,0,0,0.318565414324097,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,1.41802225746102,2.21729397462564,0.43917392846563,0,0,0,0.649094787309367,0.522389211897802,1.72845348674525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.6780147367823,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,1.17002132569619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85273810081437,0.144781306667579,0,0,0.672510863961164,0,0,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,1.03473071292505,0.664225598535437,0.368738337083406,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,74.4855099857896,4.3045093636782,0.399158742865633,0.5745161103971,0.635020748171649,0.649243880549111,0.280797178113459,0,0,0,0,0.1605880751037,0.403599414382095,0.425846237690326,0,0,0,0,1.36771666781428,1.11362469558097,0,0,0.33307196799782,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.06943422136123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2631957834884,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494255755786011,0.626531697032732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0.511164065356265,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=100507600 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=100bp_to_ENST00000437007,NR_045486,uc002tuv.1_5end | |||
|coexpression_cluster_id=C46 | |||
|description=CAGE_peak_1_at_LOC100507600_5end | |||
|id=chr2:136577861..136577876,+ | |||
|ontology_enrichment_celltype=CL:0000988!1.55e-10!182;CL:0000037!3.67e-10!172;CL:0000566!3.67e-10!172;CL:0002032!1.11e-08!165;CL:0000837!1.11e-08!165;CL:0000838!1.85e-08!52;CL:0000542!3.20e-08!53;CL:0000051!3.20e-08!53;CL:0000064!4.75e-08!3;CL:0005012!4.75e-08!3;CL:0000067!4.75e-08!3;CL:0002304!4.75e-08!3;CL:0000084!2.80e-07!25;CL:0000827!2.80e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000064;1.36e-11;3!CL:0000067;1.36e-11;3!CL:0005012;1.36e-11;3!CL:0002304;1.36e-11;3!CL:0000228;1.83e-09;1!CL:0002372;1.83e-09;1!CL:0000084;5.54e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,1.10e-11,3;CL:0000067,1.10e-11,3;CL:0005012,1.10e-11,3;CL:0002304,1.10e-11,3;CL:0000228,1.69e-09,1;CL:0002372,1.69e-09,1;CL:0000838,7.63e-09,52;CL:0000542,1.17e-08,53;CL:0000051,1.17e-08,53;CL:0000084,5.58e-08,25;CL:0000827,5.58e-08,25;CL:0000037,8.93e-07,168 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1240!2.78e-18!39;DOID:2531!1.34e-17!51;DOID:0060083!1.34e-17!51;DOID:8692!7.50e-11!31 | |||
|ontology_enrichment_disease_v019=DOID:630;1.49e-09;1!DOID:0050177;1.49e-09;1!DOID:0050427;1.49e-09;1!DOID:0060060;3.53e-09;1!DOID:0060061;3.53e-09;1!DOID:8691;3.53e-09;1!DOID:1240;2.26e-07;39!DOID:2531;4.00e-07;51!DOID:0060083;4.00e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.74e-11,51;DOID:0060083,1.74e-11,51;DOID:630,1.43e-09,1;DOID:0050177,1.43e-09,1;DOID:0050427,1.43e-09,1;DOID:1240,2.34e-09,39;DOID:0060060,2.77e-09,1;DOID:0060061,2.77e-09,1;DOID:8691,2.77e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000488!8.88e-10!4;UBERON:0001778!4.75e-08!3;UBERON:0001775!4.75e-08!3;UBERON:0002384!3.29e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;9.84e-18;2!UBERON:0005058;9.84e-18;2!UBERON:0009113;9.84e-18;2!UBERON:0001778;1.36e-11;3!UBERON:0001775;1.36e-11;3!UBERON:0000488;6.46e-09;4!UBERON:0004177;1.28e-07;5!UBERON:0005057;1.28e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.10e-11,3;UBERON:0001775,1.10e-11,3;UBERON:0002370,2.55e-09,4;UBERON:0005058,2.55e-09,4;UBERON:0009113,2.55e-09,4;UBERON:0003295,2.55e-09,4;UBERON:0005562,2.55e-09,4;UBERON:0000488,5.51e-09,4;UBERON:0000974,5.33e-08,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.687720651731561,1.31360943119913,1.18066171970519,0,0,0,0,0,0,0,0,0.880801318004542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552700035571697,0.289803085735052,0.14828656316206,0,0,0,0,0,0,0.318565414324097,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,1.41802225746102,2.21729397462564,0.43917392846563,0,0,0,0.649094787309367,0.522389211897802,1.72845348674525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.6780147367823,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,1.17002132569619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85273810081437,0.144781306667579,0,0,0.672510863961164,0,0,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,1.03473071292505,0.664225598535437,0.368738337083406,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,74.4855099857896,4.3045093636782,0.399158742865633,0.5745161103971,0.635020748171649,0.649243880549111,0.280797178113459,0,0,0,0,0.1605880751037,0.403599414382095,0.425846237690326,0,0,0,0,1.36771666781428,1.11362469558097,0,0,0.33307196799782,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.06943422136123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2631957834884,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494255755786011,0.626531697032732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0.511164065356265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0062716070103,0,0,0,0,0,0,0,0,0,0.53168342911599,0,0.150257608997218,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39991177098451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41193548092464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576169937778896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.644578879735772,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3806443146374,33.5862331147232,26.7542018615148,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,4.02547587182052,3.52625341533556 | |||
|short_description=p1@LOC100507600 | |||
}} |
Revision as of 13:36, 12 September 2013
Short description: | p1@LOC100507600 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LOC100507600_5end |
Coexpression cluster: | C46_acute_Hodgkin_thymus_CD8_chronic_CD4_merkel |
Association with transcript: | 100bp_to_ENST00000437007, NR_045486, uc002tuv.1_5end |
EntrezGene: | LOC100507600 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 1.10e-11 | 3 |
ciliated epithelial cell | 1.10e-11 | 3 |
multi-ciliated epithelial cell | 1.10e-11 | 3 |
non-pigmented ciliary epithelial cell | 1.10e-11 | 3 |
multinucleate cell | 1.69e-09 | 1 |
myotube | 1.69e-09 | 1 |
lymphoid lineage restricted progenitor cell | 7.63e-09 | 52 |
lymphocyte | 1.17e-08 | 53 |
common lymphoid progenitor | 1.17e-08 | 53 |
T cell | 5.58e-08 | 25 |
pro-T cell | 5.58e-08 | 25 |
hematopoietic stem cell | 8.93e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 1.10e-11 | 3 |
ciliary body | 1.10e-11 | 3 |
thymus | 2.55e-09 | 4 |
hemolymphoid system gland | 2.55e-09 | 4 |
thymic region | 2.55e-09 | 4 |
pharyngeal gland | 2.55e-09 | 4 |
thymus primordium | 2.55e-09 | 4 |
atypical epithelium | 5.51e-09 | 4 |
neck | 5.33e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.74e-11 | 51 |
immune system cancer | 1.74e-11 | 51 |
genetic disease | 1.43e-09 | 1 |
monogenic disease | 1.43e-09 | 1 |
xeroderma pigmentosum | 1.43e-09 | 1 |
leukemia | 2.34e-09 | 39 |
non-Hodgkin lymphoma | 2.77e-09 | 1 |
cutaneous T cell lymphoma | 2.77e-09 | 1 |
mycosis fungoides | 2.77e-09 | 1 |
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