FFCP PHASE1:Mm9::chr10:20032045..20032084,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=74420|HGNC=|MCL_coexpression_id=6|UniProt=Q9D488|association_with_transcript=15bp_to_ENSMUST00000092680_5end|description=CAGE_peak_1_at_4933406P04Rik_5end|id=chr10:20032045..20032084,-|ontology_enrichment_celltype=CL:0000144!3.46e-09!121;CL:0000012!3.46e-09!121;CL:0000063!6.42e-09!66;CL:0002371!4.00e-08!118;CL:0000034!1.70e-07!97;CL:0000723!3.51e-07!91;CL:0000048!3.51e-07!91;CL:0000548!6.42e-07!115;CL:0000004!6.42e-07!115;CL:0000255!6.42e-07!115|ontology_enrichment_celltype_v019_2=CL:0000034,2.82e-11,97;CL:0000723,1.12e-10,91;CL:0000048,1.12e-10,91;CL:0000066,1.46e-09,25;CL:0002076,1.21e-08,15;CL:0002563,4.72e-08,9;CL:0002251,4.72e-08,9;CL:0000542,6.06e-08,13;CL:0000051,6.06e-08,13;CL:0000838,6.78e-08,12;CL:0000223,1.01e-07,20;CL:0000084,3.61e-07,11;CL:0000827,3.61e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000485!3.52e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0000485,1.92e-09,11;UBERON:0003350,4.72e-08,9;UBERON:0004808,4.72e-08,9;UBERON:0001277,4.72e-08,9|phase1_expression=3.36312578920067,7.32848356042658,5.91499011206397,7.56160528267075,8.01433167914156,2.85394762250213,1.40167584357315,11.2337291394171,4.50523910885334,2.10658073689794,1.19852577757853,0.558405112967355,7.70403284690426,6.11942816932982,0.333109761815663,0.404950534779652,0,1.89277299214943,0.548457734422955,0.84877930359606,1.36069264241712,2.28369187762036,1.56719873483361,1.11994695955385,0.91763712426868,3.44539178469012,0,1.939241094173,0.950117097281869,0.504060259519861,1.55211357458713,3.17515336729816,2.46025915033828,0,5.48818077527422,1.82858109894342,4.08338712524738,19.6709866446347,9.37602413428561,14.1351410872926,54.1172968988533,15.0270006690858,15.5363312969969,1.76255545165808,2.83855407414641,2.9367480345869,0.782391344348039,0.436050312760893,0.219686182734472,0.777719596297134,0.419959264876088,0,3.35565212115473,4.35217285206807,4.7053131879945,0,0.286533439938757,1.54701627683233,1.21389876515759,1.05798195854407,0,0.338844532069132,0,0.449949858640699,0.988866362566974,1.4209602298922,0,0.384218305321555,1.24427534770173,1.75507719831198,1.68259969081106,0.285650984403804,0.662605622854841,1.22490799214954,1.72521847832825,0.919218786610021,0,0.383062014255563,0.307213066512487,1.18697658957174,0.731901148819277,0.52091337055676,0.279182999001381,1.12552522006336,0.15279824777681,0.294628585473668,0.284743361598206,0.931997229126503,0.075726193333184,0.302286240427142,8.98579914975201,0.860423876981386,2.03991400112325,0,0.649776417447669,0.448026887097336,0.140444420131752,1.02258193546835,1.29893002301434,1.7666978725517,2.39433813620357,2.56652954828636,2.54805239706646,0,1.08245520505607,1.52015919285059,1.01104889002957,0.34255163915718,0.258937883647172,0.445326417194474,1.21439728736295,0.913396434936424,1.15307748628029,0.452167921657868,0.940709657085638,0.628332956648377,0.247194967734374,0.578397427679647,0.884610551949874,0.323533699894818,0.441683036920787,0,0,0.292780797011547,0.209446706813455,1.02182822083437,2.75574786363617,5.99902730993408,1.77898317902291,0.149790639404823,0.915001205637253,2.1361239859187,0.347648640384553,0.767146371990992,0,0,0.407357455401265,0.870848794270651,4.54900965180614,1.68353484709179,1.82168620147785,1.60931473103431,1.62055916824814,2.26057226753573,1.08858398642125,2.69038812598185,1.78033276663485,0.517406741478031,1.72454394346274,1.51284864134255,0.879755620819744,0.43839146485515,0.556094498451196,0.696504333044333,0.205782136407943,0.199034266818493,0.702213187313235,2.05878325691772,2.27330799516474,0.207125772535502,0.234526059981096,0.720248245844059,0.473489471170421,0.393528463494808,0.462801338662135,0.697601834251224,0.268273401399619,1.05088808130453,0.658239399653922,0.492502392237286,0.56748166682099,1.02339991197733,0.878200461164203,0.939444931322602,0.630869845692382,1.44066457330998,0.660837565967596,0.528901133327089,1.06644125267617,0.928946687441754,0.644337306610467,0.201683524623343,0.22237804384487,0.570676878337677,0.474529061544512,1.31759163779209,0.251335208800269,0.596869416123452,0.19496408711912,1.79763881730844,0.216138049874694,0.796565093017469,0.758671603812327,0.456994050438915,0,0.407302655690628,0.775809948670503,0.561086559122548,0.379419222745544,0.590440591918409,0.627994911365499,1.35736880313981,0.592905254174298,0.166845105716094,0.196558995113203,0,0.608580364165509,0.241177159752417,0.25462585178142,0.575392274901621,0.648540907100142,0.274561413188081,0,0.372140947668503,0,0.505157755894224,0.358794827043824,1.4473305640901,0.184753190166605,0.37898282354097,0.162964976442026,0.678980343100753,0.469380496577004,0.670025029767263,0.476087281772027,0.780534591431195,1.10344600874334,0.44292937929755,0.637819074629948,0.491589944147214,0.518054945597687,0.867894351489069,0,0.54390568381871,0,0.275936746304732,0.160550589987792,0.586058432961016,0.655739781506702,0.252470927204373,0.631016438832513,0.390438744296638,1.50796378412959,1.43381278771531,4.23317480756549,2.26461224631066,1.61924280669958,1.16902343164525,3.16230222357219,0.321321316421807,0.141940085208269,1.6025904330053,0.977321756121456,0.824850614862677,1.32745138339963,1.45668381692989,0.302323556964751,0,0.590603785761546,0.307435147943927,0.258428293168221,0.727067458955011,1.42598951353889,0,0,1.03135543248187,1.70219802876894,1.26042765821917,1.81102157295856,2.57204442037911,0.886701168211368,1.60531935841864,0.658196082408484,2.13125464380219,0.469343416127421,1.0591603543191,0.882113592219848,0.8244312647074,0.161464426695906,0.542816324353403,0,0.656563598980245,1.1659233465194,0.18542530201051,0.683483523191411,1.44470807574256,0.555583582109135,0.188368457004691,0.27338845544205,0.457556346413045,1.69978429993855,4.3384950220334,3.59319931891502,0,0.790839983952838,0.609958401380546,0.432021363287205,0.418176592028937,1.31017538247707,0.674321731924103,0.661227645802687,0.523511883968059,0.388844919875379,0,0.56369293868419,1.04661582230785,0.496375471371293,0.777804753376191,1.6790777052105,0.675824501963113,0.821500670520278,1.0416350787516,0.838874755405687,1.20792060413003,1.15212002503146,1.58005560314089,0.608175645870493,0.410843828659309,0,1.25318686967237,0.596044064343795,0.600977247599844,0.590758108698309,1.11063094942962,0.762068066549998,0.201652370273681,1.16949456887703,1.25075394132428,1.98690733708667,0.453460767230423,0.221985953374065,0.986852422704233,0,0.19318959403219,0.187682475451182,0.73260649706906,0,0.501572104035363,1.12950368523413,0,1.71868654031819,0.343706364687375,0.685082519770642,0,0.675022500231806,0.45032120322422,0,0,0.93408612825759,0.798049746802062,1.36586884603307,0.729320151204882,0.419226325255965,0.183843508450014,0.44449345560323,0,0.962757628775446,0.505394423527595,0.50695859978048,0.565879024158229,0.280924522409647,0.384150914429216,0.861532034334199,0.476293691283074,0.347652977834566,0.192909220463705,1.23625770240992,0.294397840268795,0.685738504770831,0.532427418478012,0.715308569841963,1.16277133305863,0.282328141245992,0.507687647350059,0.182927972872773,0.526139422875686,0.135804113845862,0.561142271657738,0.355905054372522,0.591026894253381,0,0,1.15743966588685,0.499621155875892,0.467863216890817,0.214871054048298,0.191288332068843,0,0.231867835620421|short_description=p1@4933406P04Rik}} | ||
|EntrezGene=74420 | |||
|HGNC= | |||
|MCL_coexpression_id=6 | |||
|UniProt=Q9D488 | |||
|association_with_transcript=15bp_to_ENSMUST00000092680_5end | |||
|description=CAGE_peak_1_at_4933406P04Rik_5end | |||
|id=chr10:20032045..20032084,- | |||
|ontology_enrichment_celltype=CL:0000144!3.46e-09!121;CL:0000012!3.46e-09!121;CL:0000063!6.42e-09!66;CL:0002371!4.00e-08!118;CL:0000034!1.70e-07!97;CL:0000723!3.51e-07!91;CL:0000048!3.51e-07!91;CL:0000548!6.42e-07!115;CL:0000004!6.42e-07!115;CL:0000255!6.42e-07!115 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,2.82e-11,97;CL:0000723,1.12e-10,91;CL:0000048,1.12e-10,91;CL:0000066,1.46e-09,25;CL:0002076,1.21e-08,15;CL:0002563,4.72e-08,9;CL:0002251,4.72e-08,9;CL:0000542,6.06e-08,13;CL:0000051,6.06e-08,13;CL:0000838,6.78e-08,12;CL:0000223,1.01e-07,20;CL:0000084,3.61e-07,11;CL:0000827,3.61e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000485!3.52e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000485,1.92e-09,11;UBERON:0003350,4.72e-08,9;UBERON:0004808,4.72e-08,9;UBERON:0001277,4.72e-08,9 | |||
|phase1_expression=3.36312578920067,7.32848356042658,5.91499011206397,7.56160528267075,8.01433167914156,2.85394762250213,1.40167584357315,11.2337291394171,4.50523910885334,2.10658073689794,1.19852577757853,0.558405112967355,7.70403284690426,6.11942816932982,0.333109761815663,0.404950534779652,0,1.89277299214943,0.548457734422955,0.84877930359606,1.36069264241712,2.28369187762036,1.56719873483361,1.11994695955385,0.91763712426868,3.44539178469012,0,1.939241094173,0.950117097281869,0.504060259519861,1.55211357458713,3.17515336729816,2.46025915033828,0,5.48818077527422,1.82858109894342,4.08338712524738,19.6709866446347,9.37602413428561,14.1351410872926,54.1172968988533,15.0270006690858,15.5363312969969,1.76255545165808,2.83855407414641,2.9367480345869,0.782391344348039,0.436050312760893,0.219686182734472,0.777719596297134,0.419959264876088,0,3.35565212115473,4.35217285206807,4.7053131879945,0,0.286533439938757,1.54701627683233,1.21389876515759,1.05798195854407,0,0.338844532069132,0,0.449949858640699,0.988866362566974,1.4209602298922,0,0.384218305321555,1.24427534770173,1.75507719831198,1.68259969081106,0.285650984403804,0.662605622854841,1.22490799214954,1.72521847832825,0.919218786610021,0,0.383062014255563,0.307213066512487,1.18697658957174,0.731901148819277,0.52091337055676,0.279182999001381,1.12552522006336,0.15279824777681,0.294628585473668,0.284743361598206,0.931997229126503,0.075726193333184,0.302286240427142,8.98579914975201,0.860423876981386,2.03991400112325,0,0.649776417447669,0.448026887097336,0.140444420131752,1.02258193546835,1.29893002301434,1.7666978725517,2.39433813620357,2.56652954828636,2.54805239706646,0,1.08245520505607,1.52015919285059,1.01104889002957,0.34255163915718,0.258937883647172,0.445326417194474,1.21439728736295,0.913396434936424,1.15307748628029,0.452167921657868,0.940709657085638,0.628332956648377,0.247194967734374,0.578397427679647,0.884610551949874,0.323533699894818,0.441683036920787,0,0,0.292780797011547,0.209446706813455,1.02182822083437,2.75574786363617,5.99902730993408,1.77898317902291,0.149790639404823,0.915001205637253,2.1361239859187,0.347648640384553,0.767146371990992,0,0,0.407357455401265,0.870848794270651,4.54900965180614,1.68353484709179,1.82168620147785,1.60931473103431,1.62055916824814,2.26057226753573,1.08858398642125,2.69038812598185,1.78033276663485,0.517406741478031,1.72454394346274,1.51284864134255,0.879755620819744,0.43839146485515,0.556094498451196,0.696504333044333,0.205782136407943,0.199034266818493,0.702213187313235,2.05878325691772,2.27330799516474,0.207125772535502,0.234526059981096,0.720248245844059,0.473489471170421,0.393528463494808,0.462801338662135,0.697601834251224,0.268273401399619,1.05088808130453,0.658239399653922,0.492502392237286,0.56748166682099,1.02339991197733,0.878200461164203,0.939444931322602,0.630869845692382,1.44066457330998,0.660837565967596,0.528901133327089,1.06644125267617,0.928946687441754,0.644337306610467,0.201683524623343,0.22237804384487,0.570676878337677,0.474529061544512,1.31759163779209,0.251335208800269,0.596869416123452,0.19496408711912,1.79763881730844,0.216138049874694,0.796565093017469,0.758671603812327,0.456994050438915,0,0.407302655690628,0.775809948670503,0.561086559122548,0.379419222745544,0.590440591918409,0.627994911365499,1.35736880313981,0.592905254174298,0.166845105716094,0.196558995113203,0,0.608580364165509,0.241177159752417,0.25462585178142,0.575392274901621,0.648540907100142,0.274561413188081,0,0.372140947668503,0,0.505157755894224,0.358794827043824,1.4473305640901,0.184753190166605,0.37898282354097,0.162964976442026,0.678980343100753,0.469380496577004,0.670025029767263,0.476087281772027,0.780534591431195,1.10344600874334,0.44292937929755,0.637819074629948,0.491589944147214,0.518054945597687,0.867894351489069,0,0.54390568381871,0,0.275936746304732,0.160550589987792,0.586058432961016,0.655739781506702,0.252470927204373,0.631016438832513,0.390438744296638,1.50796378412959,1.43381278771531,4.23317480756549,2.26461224631066,1.61924280669958,1.16902343164525,3.16230222357219,0.321321316421807,0.141940085208269,1.6025904330053,0.977321756121456,0.824850614862677,1.32745138339963,1.45668381692989,0.302323556964751,0,0.590603785761546,0.307435147943927,0.258428293168221,0.727067458955011,1.42598951353889,0,0,1.03135543248187,1.70219802876894,1.26042765821917,1.81102157295856,2.57204442037911,0.886701168211368,1.60531935841864,0.658196082408484,2.13125464380219,0.469343416127421,1.0591603543191,0.882113592219848,0.8244312647074,0.161464426695906,0.542816324353403,0,0.656563598980245,1.1659233465194,0.18542530201051,0.683483523191411,1.44470807574256,0.555583582109135,0.188368457004691,0.27338845544205,0.457556346413045,1.69978429993855,4.3384950220334,3.59319931891502,0,0.790839983952838,0.609958401380546,0.432021363287205,0.418176592028937,1.31017538247707,0.674321731924103,0.661227645802687,0.523511883968059,0.388844919875379,0,0.56369293868419,1.04661582230785,0.496375471371293,0.777804753376191,1.6790777052105,0.675824501963113,0.821500670520278,1.0416350787516,0.838874755405687,1.20792060413003,1.15212002503146,1.58005560314089,0.608175645870493,0.410843828659309,0,1.25318686967237,0.596044064343795,0.600977247599844,0.590758108698309,1.11063094942962,0.762068066549998,0.201652370273681,1.16949456887703,1.25075394132428,1.98690733708667,0.453460767230423,0.221985953374065,0.986852422704233,0,0.19318959403219,0.187682475451182,0.73260649706906,0,0.501572104035363,1.12950368523413,0,1.71868654031819,0.343706364687375,0.685082519770642,0,0.675022500231806,0.45032120322422,0,0,0.93408612825759,0.798049746802062,1.36586884603307,0.729320151204882,0.419226325255965,0.183843508450014,0.44449345560323,0,0.962757628775446,0.505394423527595,0.50695859978048,0.565879024158229,0.280924522409647,0.384150914429216,0.861532034334199,0.476293691283074,0.347652977834566,0.192909220463705,1.23625770240992,0.294397840268795,0.685738504770831,0.532427418478012,0.715308569841963,1.16277133305863,0.282328141245992,0.507687647350059,0.182927972872773,0.526139422875686,0.135804113845862,0.561142271657738,0.355905054372522,0.591026894253381,0,0,1.15743966588685,0.499621155875892,0.467863216890817,0.214871054048298,0.191288332068843,0,0.231867835620421 | |||
|short_description=p1@4933406P04Rik | |||
}} | |||
Revision as of 16:23, 12 September 2013
| Short description: | p1@4933406P04Rik |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_4933406P04Rik_5end |
| Coexpression cluster: | MCL_coexpression_mm9:6 |
| Association with transcript: | 15bp_to_ENSMUST00000092680_5end |
| EntrezGene: | 4933406P04Rik |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| stem cell | 2.82e-11 | 97 |
| somatic stem cell | 1.12e-10 | 91 |
| multi fate stem cell | 1.12e-10 | 91 |
| epithelial cell | 1.46e-09 | 25 |
| endo-epithelial cell | 1.21e-08 | 15 |
| intestinal epithelial cell | 4.72e-08 | 9 |
| epithelial cell of alimentary canal | 4.72e-08 | 9 |
| lymphocyte | 6.06e-08 | 13 |
| common lymphoid progenitor | 6.06e-08 | 13 |
| lymphoid lineage restricted progenitor cell | 6.78e-08 | 12 |
| endodermal cell | 1.01e-07 | 20 |
| T cell | 3.61e-07 | 11 |
| pro-T cell | 3.61e-07 | 11 |
| Ontology term | p-value | n |
|---|---|---|
| simple columnar epithelium | 1.92e-09 | 11 |
| epithelium of mucosa | 4.72e-08 | 9 |
| gastrointestinal system epithelium | 4.72e-08 | 9 |
| intestinal epithelium | 4.72e-08 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
