FFCP PHASE1:Hg19::chr4:16085657..16085660,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8842|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9454|TSSclassifier=S|UniProt=|association_with_transcript=7bp_to_ENST00000543373_5end|description=CAGE_peak_3_at_PROM1_5end|id=chr4:16085657..16085660,-|ontology_enrichment_celltype=CL:0002322!5.42e-08!5|ontology_enrichment_celltype_v019=CL:0002322;4.14e-12;5!CL:0000039;3.08e-09;7!CL:0000586;3.08e-09;7|ontology_enrichment_celltype_v019_2=CL:0002322,5.19e-12,5;CL:0000039,2.95e-09,7;CL:0000586,2.95e-09,7|ontology_enrichment_development_v019=UBERON:0009117;1.52e-09;10!UBERON:0005564;1.52e-09;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3493;1.03e-08;2!DOID:3095;1.15e-07;22!DOID:2994;1.15e-07;22|ontology_enrichment_disease_v019_2=DOID:3493,1.12e-08,2;DOID:3095,1.01e-07,22;DOID:2994,1.01e-07,22;DOID:305,1.61e-07,106|ontology_enrichment_uberon=UBERON:0007023!1.82e-21!115;UBERON:0001017!3.36e-15!82;UBERON:0005743!5.23e-15!86;UBERON:0001893!1.79e-14!34;UBERON:0002780!1.90e-14!41;UBERON:0001890!1.90e-14!41;UBERON:0006240!1.90e-14!41;UBERON:0001049!5.64e-14!57;UBERON:0005068!5.64e-14!57;UBERON:0006241!5.64e-14!57;UBERON:0007135!5.64e-14!57;UBERON:0003080!6.16e-14!42;UBERON:0002791!9.30e-14!33;UBERON:0000073!1.51e-13!94;UBERON:0001016!1.51e-13!94;UBERON:0002020!3.95e-13!34;UBERON:0003528!3.95e-13!34;UBERON:0000955!4.73e-13!69;UBERON:0006238!4.73e-13!69;UBERON:0001869!5.54e-13!32;UBERON:0003075!8.63e-13!86;UBERON:0007284!8.63e-13!86;UBERON:0002616!3.51e-12!59;UBERON:0003056!4.02e-12!61;UBERON:0000956!5.62e-12!25;UBERON:0000203!5.62e-12!25;UBERON:0002346!9.30e-12!90;UBERON:0000153!4.42e-09!129;UBERON:0007811!4.42e-09!129;UBERON:0002619!4.96e-09!22;UBERON:0001950!6.74e-09!20;UBERON:0000033!1.10e-08!123;UBERON:0004121!9.44e-08!169;UBERON:0000062!2.50e-07!511;UBERON:0000924!2.67e-07!173;UBERON:0006601!2.67e-07!173;UBERON:0000064!4.43e-07!219;UBERON:0000481!7.42e-07!347|ontology_enrichment_uberon_v019=UBERON:0001829;1.69e-09;2!UBERON:0003127;4.01e-09;2!UBERON:0000922;5.53e-09;49!UBERON:0000473;4.37e-08;8!UBERON:0001044;7.01e-07;6!UBERON:0003293;7.01e-07;6!UBERON:0003294;7.01e-07;6!UBERON:0010047;7.01e-07;6!UBERON:0003408;7.01e-07;6!UBERON:0000167;7.01e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.80e-09,2;UBERON:0003127,3.87e-09,2;UBERON:0000473,4.22e-08,8;UBERON:0001044,7.16e-07,6;UBERON:0003293,7.16e-07,6;UBERON:0003294,7.16e-07,6;UBERON:0010047,7.16e-07,6;UBERON:0000167,7.16e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43117993565528,0.410623275218653,1.88313959392204,0,0,0,0,0,0,0,0,0,0,0,4.11040615068786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.28685314316103,0,1.31692042387539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31750041646231,1.45782745153634,1.39432731443422,0.518305275076852,1.00928340350251,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.67356066463832,0,0,0,0,0,0,0,0,0.695582429850461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05461064305758,0,0,0,0,0,0.451199612907412,2.84956747286335,0.784349769176855,0,3.4832037534649,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8714054040822,0,0,0,0,0,0,0,0,0,0,0,2.11125408127993,0.597743964753209,0.552567831062295,0,0,0,0,0.629078458031288,0,0,0.197286811273867,0,0,0,0.0927680981618513,3.99227596002388,0,0,0,0,0,0,0,0,0.520874984799877,0,0.120596438625408,0,0.110579259931225,0.295547618953547,0.219385397153973,0,0,0.384751292518985,0,0,0,0.869178975376065,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,2.3209787098083,0,3.8165329287164,0,0,0.442287822516696,0.611030144933625,0,0,0,0.202203398942031,0.802577647298789,0.234264445725339,0,0,0,0.394584402849391,1.20990716048664,1.22429104652196,0,0,0,0,0,0,0,6.26141001265544,0,0.173559738335131,0,0,0,0,0,0,0,0,0,2.71176888936639,0,0,0.189932387867636,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,1.27746588066972,0.429765441419957,0,0.558564802544508,0.916641696046735,0,0,0.429226048136571,0,0.268733889946905,0,0,0.551482276150566,0.412079291905832,0.471824806979294,1.37798474120648,0,0,0.136203406111576,1.92903778158023,2.06309154895851,0.83088067605837,0,0,0,0,1.10327990218877,0.681909645754975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0.320362237703084,0.943225830597996,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,7.88587219136516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.83078695340614,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0.205116364240755,0.756215088665154,0.207471757392654,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.135075169236789,0.781078098613847,0,0.0634158101939068,1.09394961803644,7.67560873600055,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0.135939465953663,0.131545547125698,0,0,0.078493092850514,0,0.280272163313789,0.913158720509496,0,0,0.78624198594322,2.84424501118908,0,0,0,0,0,0,5.59295566466361,0,0,0,0,0,0,0,1.3741032706134,3.41370189950354,0,0.102662806856247,2.3196288626764,0,0.935757853848423,2.38740930193642,0,0,3.73797756934459,1.81155412280008,0.308696632431779,0.437119121007915,0.940634592723046,0.245148321753905,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,4.12856355064087,0.143339583151451,0,0.135982980381829,0.436350690340377,0.5290268405154,0,0,0,1.13549782351571,1.96678029534652,0,1.73381010561369,2.13773924212448,3.21632148371957,4.51273570726275,0.303114792872958,0.267964130156178,0,0.103432995861895,1.0661699095049,0.714193294391221,0,0,0,0.12729431655633,1.41482032270754,0,0.342233301085281,1.0776328482334,4.2316101181679,2.32862249582209,0,0,0,1.07790242527904,0,0.244482888365733,0.813792356631477,0,0,0|short_description=p3@PROM1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=8842 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9454 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=7bp_to_ENST00000543373_5end | |||
|description=CAGE_peak_3_at_PROM1_5end | |||
|id=chr4:16085657..16085660,- | |||
|ontology_enrichment_celltype=CL:0002322!5.42e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0002322;4.14e-12;5!CL:0000039;3.08e-09;7!CL:0000586;3.08e-09;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,5.19e-12,5;CL:0000039,2.95e-09,7;CL:0000586,2.95e-09,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.52e-09;10!UBERON:0005564;1.52e-09;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;1.03e-08;2!DOID:3095;1.15e-07;22!DOID:2994;1.15e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.12e-08,2;DOID:3095,1.01e-07,22;DOID:2994,1.01e-07,22;DOID:305,1.61e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.82e-21!115;UBERON:0001017!3.36e-15!82;UBERON:0005743!5.23e-15!86;UBERON:0001893!1.79e-14!34;UBERON:0002780!1.90e-14!41;UBERON:0001890!1.90e-14!41;UBERON:0006240!1.90e-14!41;UBERON:0001049!5.64e-14!57;UBERON:0005068!5.64e-14!57;UBERON:0006241!5.64e-14!57;UBERON:0007135!5.64e-14!57;UBERON:0003080!6.16e-14!42;UBERON:0002791!9.30e-14!33;UBERON:0000073!1.51e-13!94;UBERON:0001016!1.51e-13!94;UBERON:0002020!3.95e-13!34;UBERON:0003528!3.95e-13!34;UBERON:0000955!4.73e-13!69;UBERON:0006238!4.73e-13!69;UBERON:0001869!5.54e-13!32;UBERON:0003075!8.63e-13!86;UBERON:0007284!8.63e-13!86;UBERON:0002616!3.51e-12!59;UBERON:0003056!4.02e-12!61;UBERON:0000956!5.62e-12!25;UBERON:0000203!5.62e-12!25;UBERON:0002346!9.30e-12!90;UBERON:0000153!4.42e-09!129;UBERON:0007811!4.42e-09!129;UBERON:0002619!4.96e-09!22;UBERON:0001950!6.74e-09!20;UBERON:0000033!1.10e-08!123;UBERON:0004121!9.44e-08!169;UBERON:0000062!2.50e-07!511;UBERON:0000924!2.67e-07!173;UBERON:0006601!2.67e-07!173;UBERON:0000064!4.43e-07!219;UBERON:0000481!7.42e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001829;1.69e-09;2!UBERON:0003127;4.01e-09;2!UBERON:0000922;5.53e-09;49!UBERON:0000473;4.37e-08;8!UBERON:0001044;7.01e-07;6!UBERON:0003293;7.01e-07;6!UBERON:0003294;7.01e-07;6!UBERON:0010047;7.01e-07;6!UBERON:0003408;7.01e-07;6!UBERON:0000167;7.01e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.80e-09,2;UBERON:0003127,3.87e-09,2;UBERON:0000473,4.22e-08,8;UBERON:0001044,7.16e-07,6;UBERON:0003293,7.16e-07,6;UBERON:0003294,7.16e-07,6;UBERON:0010047,7.16e-07,6;UBERON:0000167,7.16e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43117993565528,0.410623275218653,1.88313959392204,0,0,0,0,0,0,0,0,0,0,0,4.11040615068786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.28685314316103,0,1.31692042387539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31750041646231,1.45782745153634,1.39432731443422,0.518305275076852,1.00928340350251,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.67356066463832,0,0,0,0,0,0,0,0,0.695582429850461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05461064305758,0,0,0,0,0,0.451199612907412,2.84956747286335,0.784349769176855,0,3.4832037534649,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8714054040822,0,0,0,0,0,0,0,0,0,0,0,2.11125408127993,0.597743964753209,0.552567831062295,0,0,0,0,0.629078458031288,0,0,0.197286811273867,0,0,0,0.0927680981618513,3.99227596002388,0,0,0,0,0,0,0,0,0.520874984799877,0,0.120596438625408,0,0.110579259931225,0.295547618953547,0.219385397153973,0,0,0.384751292518985,0,0,0,0.869178975376065,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,2.3209787098083,0,3.8165329287164,0,0,0.442287822516696,0.611030144933625,0,0,0,0.202203398942031,0.802577647298789,0.234264445725339,0,0,0,0.394584402849391,1.20990716048664,1.22429104652196,0,0,0,0,0,0,0,6.26141001265544,0,0.173559738335131,0,0,0,0,0,0,0,0,0,2.71176888936639,0,0,0.189932387867636,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,1.27746588066972,0.429765441419957,0,0.558564802544508,0.916641696046735,0,0,0.429226048136571,0,0.268733889946905,0,0,0.551482276150566,0.412079291905832,0.471824806979294,1.37798474120648,0,0,0.136203406111576,1.92903778158023,2.06309154895851,0.83088067605837,0,0,0,0,1.10327990218877,0.681909645754975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0.320362237703084,0.943225830597996,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,7.88587219136516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.83078695340614,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0.205116364240755,0.756215088665154,0.207471757392654,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.135075169236789,0.781078098613847,0,0.0634158101939068,1.09394961803644,7.67560873600055,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0.135939465953663,0.131545547125698,0,0,0.078493092850514,0,0.280272163313789,0.913158720509496,0,0,0.78624198594322,2.84424501118908,0,0,0,0,0,0,5.59295566466361,0,0,0,0,0,0,0,1.3741032706134,3.41370189950354,0,0.102662806856247,2.3196288626764,0,0.935757853848423,2.38740930193642,0,0,3.73797756934459,1.81155412280008,0.308696632431779,0.437119121007915,0.940634592723046,0.245148321753905,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,4.12856355064087,0.143339583151451,0,0.135982980381829,0.436350690340377,0.5290268405154,0,0,0,1.13549782351571,1.96678029534652,0,1.73381010561369,2.13773924212448,3.21632148371957,4.51273570726275,0.303114792872958,0.267964130156178,0,0.103432995861895,1.0661699095049,0.714193294391221,0,0,0,0.12729431655633,1.41482032270754,0,0.342233301085281,1.0776328482334,4.2316101181679,2.32862249582209,0,0,0,1.07790242527904,0,0.244482888365733,0.813792356631477,0,0,0 | |||
|short_description=p3@PROM1 | |||
}} |
Revision as of 03:08, 13 September 2013
Short description: | p3@PROM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PROM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 7bp_to_ENST00000543373_5end |
EntrezGene: | PROM1 |
HGNC: | 9454 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 5.19e-12 | 5 |
germ line cell | 2.95e-09 | 7 |
germ cell | 2.95e-09 | 7 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 1.80e-09 | 2 |
open tracheal system trachea | 3.87e-09 | 2 |
testis | 4.22e-08 | 8 |
saliva-secreting gland | 7.16e-07 | 6 |
gland of oral region | 7.16e-07 | 6 |
gland of foregut | 7.16e-07 | 6 |
oral gland | 7.16e-07 | 6 |
oral cavity | 7.16e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.12e-08 | 2 |
germ cell and embryonal cancer | 1.01e-07 | 22 |
germ cell cancer | 1.01e-07 | 22 |
carcinoma | 1.61e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.