FFCP PHASE1:Hg19::chr4:73970050..73970089,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:73970050..73970089,+|id=chr4:73970050..73970089,+|ontology_enrichment_celltype=CL:0000039!9.21e-08!7;CL:0000586!9.21e-08!7|ontology_enrichment_celltype_v019=CL:0000764;1.38e-11;2!CL:0000558;1.38e-11;2!CL:0000182;3.73e-11;12|ontology_enrichment_celltype_v019_2=CL:0000764,1.24e-11,2;CL:0000765,1.24e-11,2;CL:0000050,1.24e-11,2;CL:0000038,1.24e-11,2;CL:0000558,1.24e-11,2;CL:0000547,1.24e-11,2;CL:0000549,1.24e-11,2;CL:0000550,1.24e-11,2;CL:0000552,1.24e-11,2;CL:0000182,3.54e-11,12;CL:0000223,4.69e-09,58;CL:0000066,8.38e-09,253|ontology_enrichment_development_v019=UBERON:0009497;2.71e-10;13!UBERON:0003104;6.32e-10;31!UBERON:0001041;4.09e-08;30!UBERON:0004161;5.54e-08;11|ontology_enrichment_disease=DOID:14566!6.24e-12!239;DOID:162!6.55e-12!235;DOID:305!1.26e-10!106;DOID:1036!2.34e-09!8;DOID:0050687!2.56e-09!143;DOID:8692!2.37e-07!31|ontology_enrichment_disease_v019=DOID:3493;1.03e-11;2!DOID:1036;1.18e-10;8|ontology_enrichment_disease_v019_2=DOID:162,7.03e-12,235;DOID:3493,1.00e-11,2;DOID:14566,1.65e-11,239;DOID:305,4.92e-11,106;DOID:0050687,1.12e-10,143;DOID:1036,1.27e-10,8|ontology_enrichment_uberon=UBERON:0001737!1.02e-09!9|ontology_enrichment_uberon_v019=UBERON:0002423;9.53e-10;25!UBERON:0002107;1.21e-09;19!UBERON:0006925;1.21e-09;19|ontology_enrichment_uberon_v019_2=UBERON:0008835,3.01e-11,22;UBERON:0003894,3.01e-11,22;UBERON:0009854,1.02e-10,23;UBERON:0003929,6.32e-10,54;UBERON:0007499,8.71e-10,25;UBERON:0009497,8.71e-10,25;UBERON:0000015,8.71e-10,25;UBERON:0002423,8.71e-10,25;UBERON:0006235,8.71e-10,25;UBERON:0004161,8.71e-10,25;UBERON:0002107,1.08e-09,19;UBERON:0006925,1.08e-09,19;UBERON:0008836,1.08e-09,19;UBERON:0009856,2.25e-09,26;UBERON:0005911,1.74e-08,82;UBERON:0004921,5.86e-07,118|phase1_expression=0,0.214100523890983,0,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.175669571386252,0.0654895377488563,0,0.370784442784429,0.324547393654683,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0,0.245668634623536,0,0,0,1.82032272387605,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0.243947412259191,0,0.232387885739037,0.10366105501537,0.504641701751257,0,0,0,0,0,0,0.473227200159376,0.337169380156203,0.723033089650446,0.220587945464788,0.435758888184812,0,0.404493924480493,0.196221465125346,0.38474715694639,0,0,0,0,2.53510069643662,0.982827216677626,4.13552934676983,0,3.19769940212095,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.07333828582095,0,0,0,0.26593811658487,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0.0821271560138091,0,0.464841513839837,2.05461064305758,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,2.85037839639715,2.3529190592241,1.02580050046556,0,0,0.824328093181778,0,0,0,0,0,0,0.154048617114644,0.307007349452259,0.275673144969061,0.214840489736547,0.290033387828457,0.340906509664404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0.573645408816206,0,0,0,0,0,0.379473173765715,0,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0.191505370132367,0,0,0,0,0.47003968731907,0,0,0.1605880751037,0,0,0,0.307240764308458,0.223676107892416,0.166849141711909,0,1.11362469558097,0,0.270455678475983,0,0,5.42707567183837,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,14.3216939740487,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53620294826866,0.269272933229316,0.217294743844016,0,0,0,0,0.31396051279005,0,1.57916962432026,2.15668787749514,1.67821586975843,4.36433585265626,0.158936578980379,0,0,5.93682900022551,0,0,0,0,0,0.247127877893006,0,0,0,0,0,0,0,0,0,0,0,1.9542044523884,0.622129148383483,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0.164230914106418,0,0,0,0.137041924646751,0,0,0,0,0,0,0.288180834308212,0,0,0.864328787928898,0,0,0,0,0.101998217636322,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0.223171457441873,0,0,0,4.80577412074064,4.53287221096415,4.65084452593876,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0.157611414598396,0.104909176269996,0,14.5222744859604,0,0,0,0,0,0,0.653174720218818,0,0.656740165994712,0,0,1.90517903781507,0,0.129282956361551,0,12.3182523276717,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:73970050..73970089,+ | |||
|id=chr4:73970050..73970089,+ | |||
|ontology_enrichment_celltype=CL:0000039!9.21e-08!7;CL:0000586!9.21e-08!7 | |||
|ontology_enrichment_celltype_v019=CL:0000764;1.38e-11;2!CL:0000558;1.38e-11;2!CL:0000182;3.73e-11;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,1.24e-11,2;CL:0000765,1.24e-11,2;CL:0000050,1.24e-11,2;CL:0000038,1.24e-11,2;CL:0000558,1.24e-11,2;CL:0000547,1.24e-11,2;CL:0000549,1.24e-11,2;CL:0000550,1.24e-11,2;CL:0000552,1.24e-11,2;CL:0000182,3.54e-11,12;CL:0000223,4.69e-09,58;CL:0000066,8.38e-09,253 | |||
|ontology_enrichment_development_v019=UBERON:0009497;2.71e-10;13!UBERON:0003104;6.32e-10;31!UBERON:0001041;4.09e-08;30!UBERON:0004161;5.54e-08;11 | |||
|ontology_enrichment_disease=DOID:14566!6.24e-12!239;DOID:162!6.55e-12!235;DOID:305!1.26e-10!106;DOID:1036!2.34e-09!8;DOID:0050687!2.56e-09!143;DOID:8692!2.37e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:3493;1.03e-11;2!DOID:1036;1.18e-10;8 | |||
|ontology_enrichment_disease_v019_2=DOID:162,7.03e-12,235;DOID:3493,1.00e-11,2;DOID:14566,1.65e-11,239;DOID:305,4.92e-11,106;DOID:0050687,1.12e-10,143;DOID:1036,1.27e-10,8 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.02e-09!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;9.53e-10;25!UBERON:0002107;1.21e-09;19!UBERON:0006925;1.21e-09;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0008835,3.01e-11,22;UBERON:0003894,3.01e-11,22;UBERON:0009854,1.02e-10,23;UBERON:0003929,6.32e-10,54;UBERON:0007499,8.71e-10,25;UBERON:0009497,8.71e-10,25;UBERON:0000015,8.71e-10,25;UBERON:0002423,8.71e-10,25;UBERON:0006235,8.71e-10,25;UBERON:0004161,8.71e-10,25;UBERON:0002107,1.08e-09,19;UBERON:0006925,1.08e-09,19;UBERON:0008836,1.08e-09,19;UBERON:0009856,2.25e-09,26;UBERON:0005911,1.74e-08,82;UBERON:0004921,5.86e-07,118 | |||
|phase1_expression=0,0.214100523890983,0,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.175669571386252,0.0654895377488563,0,0.370784442784429,0.324547393654683,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0,0.245668634623536,0,0,0,1.82032272387605,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0.243947412259191,0,0.232387885739037,0.10366105501537,0.504641701751257,0,0,0,0,0,0,0.473227200159376,0.337169380156203,0.723033089650446,0.220587945464788,0.435758888184812,0,0.404493924480493,0.196221465125346,0.38474715694639,0,0,0,0,2.53510069643662,0.982827216677626,4.13552934676983,0,3.19769940212095,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.07333828582095,0,0,0,0.26593811658487,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0.0821271560138091,0,0.464841513839837,2.05461064305758,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,2.85037839639715,2.3529190592241,1.02580050046556,0,0,0.824328093181778,0,0,0,0,0,0,0.154048617114644,0.307007349452259,0.275673144969061,0.214840489736547,0.290033387828457,0.340906509664404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0.573645408816206,0,0,0,0,0,0.379473173765715,0,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0.191505370132367,0,0,0,0,0.47003968731907,0,0,0.1605880751037,0,0,0,0.307240764308458,0.223676107892416,0.166849141711909,0,1.11362469558097,0,0.270455678475983,0,0,5.42707567183837,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,14.3216939740487,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53620294826866,0.269272933229316,0.217294743844016,0,0,0,0,0.31396051279005,0,1.57916962432026,2.15668787749514,1.67821586975843,4.36433585265626,0.158936578980379,0,0,5.93682900022551,0,0,0,0,0,0.247127877893006,0,0,0,0,0,0,0,0,0,0,0,1.9542044523884,0.622129148383483,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0.164230914106418,0,0,0,0.137041924646751,0,0,0,0,0,0,0.288180834308212,0,0,0.864328787928898,0,0,0,0,0.101998217636322,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0.223171457441873,0,0,0,4.80577412074064,4.53287221096415,4.65084452593876,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0.157611414598396,0.104909176269996,0,14.5222744859604,0,0,0,0,0,0,0.653174720218818,0,0.656740165994712,0,0,1.90517903781507,0,0.129282956361551,0,12.3182523276717,0,0,0,0,0,0,0,0,0.544017803369474,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0.597019211547496,0,0,0,0,0,0,0,0.310874401165561,0,0.159296767163702,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0.358177682162975,3.39681591877069,0,0,0,1.68942440653073,5.38107189034688,13.1263529857855,0,0,0.194860308839388,0.664324201566815,0,0,1.96618327002975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.37036506077798,0,0,0,0,0,0,0,0,1.30953347240711,0,0.147856086217045,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,1.41832609060762,0,0,0,1.40136081656895,0,0.431855182437243,4.29976519098345,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66855397145913,6.46165002406028,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85751472338282,0.126698501011437,6.1193297845189,0.26721740526556,0.643264296743914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:73970050..73970089,+ | |||
}} |
Revision as of 11:33, 13 September 2013
Short description: | p@chr4:73970050..73970089, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:73970050..73970089, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 1.24e-11 | 2 |
erythroblast | 1.24e-11 | 2 |
megakaryocyte-erythroid progenitor cell | 1.24e-11 | 2 |
erythroid progenitor cell | 1.24e-11 | 2 |
reticulocyte | 1.24e-11 | 2 |
proerythroblast | 1.24e-11 | 2 |
basophilic erythroblast | 1.24e-11 | 2 |
polychromatophilic erythroblast | 1.24e-11 | 2 |
orthochromatic erythroblast | 1.24e-11 | 2 |
hepatocyte | 3.54e-11 | 12 |
endodermal cell | 4.69e-09 | 58 |
epithelial cell | 8.38e-09 | 253 |
Ontology term | p-value | n |
---|---|---|
hepatic diverticulum | 3.01e-11 | 22 |
liver primordium | 3.01e-11 | 22 |
digestive tract diverticulum | 1.02e-10 | 23 |
gut epithelium | 6.32e-10 | 54 |
epithelial sac | 8.71e-10 | 25 |
epithelium of foregut-midgut junction | 8.71e-10 | 25 |
anatomical boundary | 8.71e-10 | 25 |
hepatobiliary system | 8.71e-10 | 25 |
foregut-midgut junction | 8.71e-10 | 25 |
septum transversum | 8.71e-10 | 25 |
liver | 1.08e-09 | 19 |
digestive gland | 1.08e-09 | 19 |
liver bud | 1.08e-09 | 19 |
sac | 2.25e-09 | 26 |
endo-epithelium | 1.74e-08 | 82 |
subdivision of digestive tract | 5.86e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
cancer | 7.03e-12 | 235 |
signet ring cell adenocarcinoma | 1.00e-11 | 2 |
disease of cellular proliferation | 1.65e-11 | 239 |
carcinoma | 4.92e-11 | 106 |
cell type cancer | 1.12e-10 | 143 |
chronic leukemia | 1.27e-10 | 8 |
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