FFCP PHASE1:Mm9::chr17:26078871..26078926,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14755|HGNC=|MCL_coexpression_id=347|UniProt=Q3TD14,D3Z0A4,Q3TF56,Q9QYT7|association_with_transcript=0bp_to_ENSMUST00000097368,ENSMUST00000124032,ENSMUST00000139226,ENSMUST00000140304,NM_011822,uc008bcp.1,uc008bcr.1,uc008bct.1,uc012ano.1_5end|description=CAGE_peak_1_at_Pigq_5end|id=chr17:26078871..26078926,-|ontology_enrichment_celltype=CL:0002321!3.48e-10!70;CL:0000220!3.48e-10!70;CL:0000221!5.52e-09!44;CL:0000133!5.52e-09!44;CL:0002319!1.07e-08!43;CL:0000055!7.95e-08!50|ontology_enrichment_celltype_v019_2=CL:0002321,3.48e-10,70;CL:0000221,5.52e-09,44;CL:0000133,5.52e-09,44;CL:0002319,1.07e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.90e-17!75;UBERON:0001016!4.90e-17!75;UBERON:0001017!7.46e-17!73;UBERON:0005743!7.46e-17!73;UBERON:0004121!6.65e-15!102;UBERON:0000924!6.65e-15!102;UBERON:0006601!6.65e-15!102;UBERON:0001049!8.91e-12!52;UBERON:0005068!8.91e-12!52;UBERON:0006241!8.91e-12!52;UBERON:0007135!8.91e-12!52;UBERON:0000955!5.83e-11!50;UBERON:0006238!5.83e-11!50;UBERON:0002616!1.45e-10!49;UBERON:0000033!3.76e-10!63;UBERON:0004111!8.70e-10!122;UBERON:0002346!1.86e-09!71;UBERON:0003075!1.86e-09!71;UBERON:0007284!1.86e-09!71;UBERON:0002020!7.89e-09!34;UBERON:0000025!1.14e-08!114;UBERON:0003076!1.77e-07!12;UBERON:0003057!1.77e-07!12;UBERON:0000480!6.81e-07!308;UBERON:0000467!6.81e-07!308|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.90e-17,75;UBERON:0001017,7.46e-17,73;UBERON:0004121,1.37e-15,95;UBERON:0000924,1.37e-15,95;UBERON:0006601,1.37e-15,95;UBERON:0000073,5.65e-13,54;UBERON:0010314,3.71e-12,92;UBERON:0001049,8.91e-12,52;UBERON:0005068,8.91e-12,52;UBERON:0006241,8.91e-12,52;UBERON:0007135,8.91e-12,52;UBERON:0010371,2.08e-10,73;UBERON:0002346,3.62e-10,64;UBERON:0003075,3.62e-10,64;UBERON:0007284,3.62e-10,64;UBERON:0004111,8.70e-10,122;UBERON:0000955,2.62e-09,47;UBERON:0006238,2.62e-09,47;UBERON:0002616,6.25e-09,46;UBERON:0002020,7.89e-09,34;UBERON:0000025,1.14e-08,114;UBERON:0003076,1.77e-07,12;UBERON:0003057,1.77e-07,12|phase1_expression=22.9012851359855,31.7567620951819,31.394947517878,48.9992022317065,48.5868858047957,23.1673395238408,19.6234618100242,13.4288256379239,5.06839399746,7.95819389494778,14.7247452673934,15.6353431630859,12.6688540149092,18.2708641055705,10.9926221399169,8.09901069559304,6.29605690315332,13.249410945046,17.2764186343231,14.004858509335,33.2519264490683,16.8794617041505,17.5003858723087,17.9191513528615,21.1056538581796,24.6919744569459,29.7225777349762,17.6686410802429,22.2327400763957,32.5118867390311,19.5122849376668,13.3356441426523,12.916360539276,0,22.8192779603507,22.275442478038,24.0919840389596,7.11503772252743,7.813353445238,9.94695113550217,7.64700934440319,5.46436387966757,7.76816564849846,16.1147927008739,16.8285705824394,19.2724089769766,41.4667412504461,35.9741508027737,55.8002904145558,45.6910262824566,32.3368633954587,48.8758718840903,12.5836954543302,10.1550699881588,15.7964085596958,21.0952737549477,23.4957420749781,17.532851137433,28.7289374420629,29.0945038599618,25.9870875437533,16.9422266034566,25.789549087223,31.496490104849,41.5323872278129,42.628806896766,49.4340182355368,80.3016258122049,19.2862678893768,16.8757422914613,16.6156719467592,59.7010557403949,64.0518768759679,15.6788222995141,13.5142114135713,18.3843757322004,70.4741638396088,57.9700514906752,52.2262213071228,26.7729164092293,21.3166209593614,27.6084086395083,62.257808777308,40.518907922281,47.5202550585879,44.1942878210502,46.2707962597085,26.2823218613674,19.6888102666279,29.8507662421803,29.5661778475711,27.5335640634044,11.5595126730318,32.9218946899068,42.2354671340985,27.3296401129375,24.9991067834518,15.3387290320252,18.9643783360094,19.7870161725791,29.2954313135495,26.9485602570067,22.9324715735981,21.3320010945999,19.0512116089868,15.9616715249312,20.2209778005913,30.6012797647081,11.9111426477699,27.6102378660574,16.4811060427829,10.3518262626128,23.2921652228619,17.0316583824463,17.0503625346772,43.4806406000677,15.8204779349999,37.595832799177,17.6922110389975,20.8679236432158,16.1214308476087,8.727754556434,7.45567044872489,39.2326267995473,40.8421078286237,21.4583926375217,10.6635460810269,5.99902730993408,10.8009693012105,38.3464036876346,26.992535566299,16.2094114225595,41.7178368461464,33.7544403676036,39.8953045554355,38.6134206101263,19.4513184954104,17.9146037678534,21.9868799837297,71.3397891455147,13.9228873970093,15.8632452059096,16.3856538122868,17.0296444154358,17.2132342852859,16.2704424761759,20.7080811277001,31.3031078594209,13.3652155618362,14.9393803332577,13.1963343122962,11.6173738186615,11.9560317167007,17.4126083261083,9.87754254758129,12.1410902759281,9.12877143507205,6.94839349209731,14.4923384691752,20.7125772535502,20.6382932783365,20.5270750065557,26.988899856714,24.9890574319203,19.9004575624718,25.3461999777945,27.9004337455604,24.0536605276369,34.7221283317444,23.8042822914688,28.5362209601412,22.2223980886505,27.6633145266724,24.2913617956273,41.2168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| ||
|EntrezGene=14755 | |||
|HGNC= | |||
|MCL_coexpression_id=347 | |||
|UniProt=Q3TD14,D3Z0A4,Q3TF56,Q9QYT7 | |||
|association_with_transcript=0bp_to_ENSMUST00000097368,ENSMUST00000124032,ENSMUST00000139226,ENSMUST00000140304,NM_011822,uc008bcp.1,uc008bcr.1,uc008bct.1,uc012ano.1_5end | |||
|description=CAGE_peak_1_at_Pigq_5end | |||
|id=chr17:26078871..26078926,- | |||
|ontology_enrichment_celltype=CL:0002321!3.48e-10!70;CL:0000220!3.48e-10!70;CL:0000221!5.52e-09!44;CL:0000133!5.52e-09!44;CL:0002319!1.07e-08!43;CL:0000055!7.95e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.48e-10,70;CL:0000221,5.52e-09,44;CL:0000133,5.52e-09,44;CL:0002319,1.07e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.90e-17!75;UBERON:0001016!4.90e-17!75;UBERON:0001017!7.46e-17!73;UBERON:0005743!7.46e-17!73;UBERON:0004121!6.65e-15!102;UBERON:0000924!6.65e-15!102;UBERON:0006601!6.65e-15!102;UBERON:0001049!8.91e-12!52;UBERON:0005068!8.91e-12!52;UBERON:0006241!8.91e-12!52;UBERON:0007135!8.91e-12!52;UBERON:0000955!5.83e-11!50;UBERON:0006238!5.83e-11!50;UBERON:0002616!1.45e-10!49;UBERON:0000033!3.76e-10!63;UBERON:0004111!8.70e-10!122;UBERON:0002346!1.86e-09!71;UBERON:0003075!1.86e-09!71;UBERON:0007284!1.86e-09!71;UBERON:0002020!7.89e-09!34;UBERON:0000025!1.14e-08!114;UBERON:0003076!1.77e-07!12;UBERON:0003057!1.77e-07!12;UBERON:0000480!6.81e-07!308;UBERON:0000467!6.81e-07!308 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.90e-17,75;UBERON:0001017,7.46e-17,73;UBERON:0004121,1.37e-15,95;UBERON:0000924,1.37e-15,95;UBERON:0006601,1.37e-15,95;UBERON:0000073,5.65e-13,54;UBERON:0010314,3.71e-12,92;UBERON:0001049,8.91e-12,52;UBERON:0005068,8.91e-12,52;UBERON:0006241,8.91e-12,52;UBERON:0007135,8.91e-12,52;UBERON:0010371,2.08e-10,73;UBERON:0002346,3.62e-10,64;UBERON:0003075,3.62e-10,64;UBERON:0007284,3.62e-10,64;UBERON:0004111,8.70e-10,122;UBERON:0000955,2.62e-09,47;UBERON:0006238,2.62e-09,47;UBERON:0002616,6.25e-09,46;UBERON:0002020,7.89e-09,34;UBERON:0000025,1.14e-08,114;UBERON:0003076,1.77e-07,12;UBERON:0003057,1.77e-07,12 | |||
|phase1_expression=22.9012851359855,31.7567620951819,31.394947517878,48.9992022317065,48.5868858047957,23.1673395238408,19.6234618100242,13.4288256379239,5.06839399746,7.95819389494778,14.7247452673934,15.6353431630859,12.6688540149092,18.2708641055705,10.9926221399169,8.09901069559304,6.29605690315332,13.249410945046,17.2764186343231,14.004858509335,33.2519264490683,16.8794617041505,17.5003858723087,17.9191513528615,21.1056538581796,24.6919744569459,29.7225777349762,17.6686410802429,22.2327400763957,32.5118867390311,19.5122849376668,13.3356441426523,12.916360539276,0,22.8192779603507,22.275442478038,24.0919840389596,7.11503772252743,7.813353445238,9.94695113550217,7.64700934440319,5.46436387966757,7.76816564849846,16.1147927008739,16.8285705824394,19.2724089769766,41.4667412504461,35.9741508027737,55.8002904145558,45.6910262824566,32.3368633954587,48.8758718840903,12.5836954543302,10.1550699881588,15.7964085596958,21.0952737549477,23.4957420749781,17.532851137433,28.7289374420629,29.0945038599618,25.9870875437533,16.9422266034566,25.789549087223,31.496490104849,41.5323872278129,42.628806896766,49.4340182355368,80.3016258122049,19.2862678893768,16.8757422914613,16.6156719467592,59.7010557403949,64.0518768759679,15.6788222995141,13.5142114135713,18.3843757322004,70.4741638396088,57.9700514906752,52.2262213071228,26.7729164092293,21.3166209593614,27.6084086395083,62.257808777308,40.518907922281,47.5202550585879,44.1942878210502,46.2707962597085,26.2823218613674,19.6888102666279,29.8507662421803,29.5661778475711,27.5335640634044,11.5595126730318,32.9218946899068,42.2354671340985,27.3296401129375,24.9991067834518,15.3387290320252,18.9643783360094,19.7870161725791,29.2954313135495,26.9485602570067,22.9324715735981,21.3320010945999,19.0512116089868,15.9616715249312,20.2209778005913,30.6012797647081,11.9111426477699,27.6102378660574,16.4811060427829,10.3518262626128,23.2921652228619,17.0316583824463,17.0503625346772,43.4806406000677,15.8204779349999,37.595832799177,17.6922110389975,20.8679236432158,16.1214308476087,8.727754556434,7.45567044872489,39.2326267995473,40.8421078286237,21.4583926375217,10.6635460810269,5.99902730993408,10.8009693012105,38.3464036876346,26.992535566299,16.2094114225595,41.7178368461464,33.7544403676036,39.8953045554355,38.6134206101263,19.4513184954104,17.9146037678534,21.9868799837297,71.3397891455147,13.9228873970093,15.8632452059096,16.3856538122868,17.0296444154358,17.2132342852859,16.2704424761759,20.7080811277001,31.3031078594209,13.3652155618362,14.9393803332577,13.1963343122962,11.6173738186615,11.9560317167007,17.4126083261083,9.87754254758129,12.1410902759281,9.12877143507205,6.94839349209731,14.4923384691752,20.7125772535502,20.6382932783365,20.5270750065557,26.988899856714,24.9890574319203,19.9004575624718,25.3461999777945,27.9004337455604,24.0536605276369,34.7221283317444,23.8042822914688,28.5362209601412,22.2223980886505,27.6633145266724,24.2913617956273,41.2168299185689,20.0663994139605,31.3897843834608,28.8251117663263,13.8637362847902,14.3986736553472,18.6857818917035,18.5548842653475,19.1245117706588,21.4954957507192,29.8953308773042,19.5991756121573,17.8447998248191,22.0841683965677,20.6661932346267,30.5598598942435,19.6685625385972,24.0960940637784,17.2597789867304,15.3093006897037,22.5415471346161,21.383389423758,22.4984885114446,27.2828339373339,39.2066530170395,47.3828575014523,48.8266043586676,50.8396315357818,21.6410417773619,10.67808676583,11.4004217165658,8.99448449539415,10.7515864335907,11.576503668116,8.40265310878685,9.78166867332756,13.943629502653,14.5517548989683,11.5014565221884,16.3742016974142,19.9704110793319,21.7217835034516,26.1920223741992,23.639732546805,24.5721742921584,16.4857528240322,19.066902243717,15.9560380628677,12.4385831592906,19.9332446355761,22.8521895250573,20.8793003207845,22.0689201748667,21.2606102062824,31.2531346568675,19.8274610806043,26.7661721892138,22.5652531387158,19.6028669121054,22.8440387203858,38.8493775685039,27.0418011378638,39.8165463169724,52.8624706530836,12.9508606847574,13.6334300690361,24.609641114468,21.0836921920185,20.4652227846159,24.3748173911603,18.7150886229211,24.0615051170508,23.074209995469,19.5811424800579,18.1832377855401,36.3093087556642,23.7039942297809,17.9846259703928,14.985600260529,24.2506080769627,43.8058956521877,15.2951800777638,18.4417369748498,18.8605079755898,27.7583779307926,23.9799415396263,18.3484088149437,20.3578888507403,18.8943610543902,23.0706833293146,35.8423269154996,36.0974401368654,22.1285743739962,10.2634823597847,15.0056073187995,17.1469628025274,24.4729522426338,21.5826269298505,18.9231373692439,28.0107753185431,19.0084083531605,15.0400770313312,23.376010193826,19.7863503529776,8.23468576149118,21.5920271242798,21.845138952574,20.1893306686425,23.6099477670179,50.8065327508797,9.05615668228619,17.3364969089107,11.6672552242918,8.2882121082064,8.47504211870356,8.23601423543482,14.9581018394593,13.0154850661002,15.6165970398999,31.5041303944987,12.1789357528737,19.721988311304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| |||
|short_description=p1@Pigq | |||
}} |
Revision as of 13:48, 13 September 2013
Short description: | p1@Pigq |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pigq_5end |
Coexpression cluster: | MCL_coexpression_mm9:347 |
Association with transcript: | 0bp_to_ENSMUST00000097368, ENSMUST00000124032, ENSMUST00000139226, ENSMUST00000140304, NM_011822, uc008bcp.1, uc008bcr.1, uc008bct.1, uc012ano.1_5end |
EntrezGene: | Pigq |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.48e-10 | 70 |
ectodermal cell | 5.52e-09 | 44 |
neurectodermal cell | 5.52e-09 | 44 |
neural cell | 1.07e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.90e-17 | 75 |
central nervous system | 7.46e-17 | 73 |
ectoderm-derived structure | 1.37e-15 | 95 |
ectoderm | 1.37e-15 | 95 |
presumptive ectoderm | 1.37e-15 | 95 |
regional part of nervous system | 5.65e-13 | 54 |
structure with developmental contribution from neural crest | 3.71e-12 | 92 |
neural tube | 8.91e-12 | 52 |
neural rod | 8.91e-12 | 52 |
future spinal cord | 8.91e-12 | 52 |
neural keel | 8.91e-12 | 52 |
ecto-epithelium | 2.08e-10 | 73 |
neurectoderm | 3.62e-10 | 64 |
neural plate | 3.62e-10 | 64 |
presumptive neural plate | 3.62e-10 | 64 |
anatomical conduit | 8.70e-10 | 122 |
brain | 2.62e-09 | 47 |
future brain | 2.62e-09 | 47 |
regional part of brain | 6.25e-09 | 46 |
gray matter | 7.89e-09 | 34 |
tube | 1.14e-08 | 114 |
posterior neural tube | 1.77e-07 | 12 |
chordal neural plate | 1.77e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.