FFCP PHASE1:Mm9::chr17:35400704..35400713,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14964|HGNC=|MCL_coexpression_id=24|UniProt=P01896|association_with_transcript=-259bp_to_uc008chh.1_5end|description=CAGE_peak_6_at_H2-D1_5end|id=chr17:35400704..35400713,+|ontology_enrichment_celltype=CL:0002563!4.23e-13!9;CL:0002251!4.23e-13!9;CL:0000066!5.58e-12!25;CL:0000223!7.05e-10!20;CL:0000239!8.99e-10!6;CL:0000677!8.99e-10!6;CL:0000212!8.99e-10!6;CL:0000584!8.99e-10!6;CL:0002076!2.32e-08!15;CL:0000075!3.41e-08!7|ontology_enrichment_celltype_v019_2=CL:0000239,4.44e-18,6;CL:0000677,4.44e-18,6;CL:0000584,4.44e-18,6;CL:0002563,1.12e-16,9;CL:0002251,1.12e-16,9;CL:0000075,1.80e-15,7;CL:0000066,2.36e-15,25;CL:0000682,1.81e-13,3;CL:0002076,8.57e-10,15;CL:0000223,1.52e-09,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!3.70e-21!15;UBERON:0001242!1.73e-18!13;UBERON:0000060!1.73e-18!13;UBERON:0001262!1.73e-18!13;UBERON:0004786!1.73e-18!13;UBERON:0000160!1.80e-17!43;UBERON:0001007!9.63e-14!128;UBERON:0001555!9.63e-14!128;UBERON:0007026!9.63e-14!128;UBERON:0004119!2.53e-13!130;UBERON:0000925!2.53e-13!130;UBERON:0006595!2.53e-13!130;UBERON:0003350!4.23e-13!9;UBERON:0004808!4.23e-13!9;UBERON:0001277!4.23e-13!9;UBERON:0005409!1.43e-12!59;UBERON:0004921!3.24e-12!126;UBERON:0004185!3.24e-12!126;UBERON:0004923!2.05e-11!24;UBERON:0000485!2.85e-10!11;UBERON:0002107!8.92e-08!22;UBERON:0007499!8.92e-08!22;UBERON:0006925!8.92e-08!22;UBERON:0009497!8.92e-08!22;UBERON:0000015!8.92e-08!22;UBERON:0002423!8.92e-08!22;UBERON:0006235!8.92e-08!22;UBERON:0008835!8.92e-08!22;UBERON:0003894!8.92e-08!22;UBERON:0004161!8.92e-08!22;UBERON:0008836!8.92e-08!22;UBERON:0009854!2.70e-07!23;UBERON:0009856!2.70e-07!23;UBERON:0003929!4.84e-07!55|ontology_enrichment_uberon_v019_2=UBERON:0000344,4.04e-32,15;UBERON:0001242,3.28e-25,13;UBERON:0001262,3.28e-25,13;UBERON:0004786,3.28e-25,13;UBERON:0000160,2.47e-20,31;UBERON:0004923,2.12e-19,24;UBERON:0003350,1.12e-16,9;UBERON:0004808,1.12e-16,9;UBERON:0001277,1.12e-16,9;UBERON:0005409,1.00e-14,47;UBERON:0000485,1.49e-13,11;UBERON:0000331,2.91e-13,3;UBERON:0002116,2.91e-13,3;UBERON:0001204,2.91e-13,3;UBERON:0001168,2.91e-13,3;UBERON:0002108,4.55e-10,4;UBERON:0001962,6.22e-09,2;UBERON:0001961,6.22e-09,2;UBERON:0001744,6.22e-09,2;UBERON:0001007,2.51e-08,116;UBERON:0001555,2.51e-08,116;UBERON:0007026,2.51e-08,116;UBERON:0004119,3.94e-08,118;UBERON:0000925,3.94e-08,118;UBERON:0006595,3.94e-08,118|phase1_expression=0,15.0059425284925,9.09998478779072,8.46899791659124,9.5170188689806,0.671517087647559,1.86890112476421,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,1.43993180514066,2.2940928106717,4.01962374880514,6.46142994238612,5.17130958446134,5.70070258369122,3.2763916868791,3.10422714917427,0,0,0,0.866554859253824,1.32987716286794,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153606533256243,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,0.679971333707751,0,1.29955283489534,0.448026887097336,0.561777680527007,0,0,0,0,0,0,0,0.216491041011214,0,0,1.59857431606684,0,0,0,0,0,0,0.117588707135705,0.251333182659351,0,0,0,0,0,0,0,0,0,1.02182822083437,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0,0.991256348951394,0.793351699990633,0,0,0,0,0.22237804384487,0.190225626112559,1.89811624617805,0.329397909448022,1.00534083520108,0.198956472041151,0.19496408711912,2.69645822596266,0.432276099749388,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0.889357881261447,0,0,0,0,0,0,0.287696137450811,0.324270453550071,0.549122826376163,0,0.372140947668503,0.936113019343682,0.757736633841335,1.25578189465339,0.964887042726734,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0.138199973804424,0,0,0,0,0,0,0,0.0826534557253359,0,1.03691978633434,0,0,0,0,0,0,0,0,0,0,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0,0,0.412085900803307,0,0,0,0,0,0.0941093804153306,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0.191288332068843,0,0|short_description=p6@H2-D1}} | ||
|EntrezGene=14964 | |||
|HGNC= | |||
|MCL_coexpression_id=24 | |||
|UniProt=P01896 | |||
|association_with_transcript=-259bp_to_uc008chh.1_5end | |||
|description=CAGE_peak_6_at_H2-D1_5end | |||
|id=chr17:35400704..35400713,+ | |||
|ontology_enrichment_celltype=CL:0002563!4.23e-13!9;CL:0002251!4.23e-13!9;CL:0000066!5.58e-12!25;CL:0000223!7.05e-10!20;CL:0000239!8.99e-10!6;CL:0000677!8.99e-10!6;CL:0000212!8.99e-10!6;CL:0000584!8.99e-10!6;CL:0002076!2.32e-08!15;CL:0000075!3.41e-08!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,4.44e-18,6;CL:0000677,4.44e-18,6;CL:0000584,4.44e-18,6;CL:0002563,1.12e-16,9;CL:0002251,1.12e-16,9;CL:0000075,1.80e-15,7;CL:0000066,2.36e-15,25;CL:0000682,1.81e-13,3;CL:0002076,8.57e-10,15;CL:0000223,1.52e-09,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!3.70e-21!15;UBERON:0001242!1.73e-18!13;UBERON:0000060!1.73e-18!13;UBERON:0001262!1.73e-18!13;UBERON:0004786!1.73e-18!13;UBERON:0000160!1.80e-17!43;UBERON:0001007!9.63e-14!128;UBERON:0001555!9.63e-14!128;UBERON:0007026!9.63e-14!128;UBERON:0004119!2.53e-13!130;UBERON:0000925!2.53e-13!130;UBERON:0006595!2.53e-13!130;UBERON:0003350!4.23e-13!9;UBERON:0004808!4.23e-13!9;UBERON:0001277!4.23e-13!9;UBERON:0005409!1.43e-12!59;UBERON:0004921!3.24e-12!126;UBERON:0004185!3.24e-12!126;UBERON:0004923!2.05e-11!24;UBERON:0000485!2.85e-10!11;UBERON:0002107!8.92e-08!22;UBERON:0007499!8.92e-08!22;UBERON:0006925!8.92e-08!22;UBERON:0009497!8.92e-08!22;UBERON:0000015!8.92e-08!22;UBERON:0002423!8.92e-08!22;UBERON:0006235!8.92e-08!22;UBERON:0008835!8.92e-08!22;UBERON:0003894!8.92e-08!22;UBERON:0004161!8.92e-08!22;UBERON:0008836!8.92e-08!22;UBERON:0009854!2.70e-07!23;UBERON:0009856!2.70e-07!23;UBERON:0003929!4.84e-07!55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,4.04e-32,15;UBERON:0001242,3.28e-25,13;UBERON:0001262,3.28e-25,13;UBERON:0004786,3.28e-25,13;UBERON:0000160,2.47e-20,31;UBERON:0004923,2.12e-19,24;UBERON:0003350,1.12e-16,9;UBERON:0004808,1.12e-16,9;UBERON:0001277,1.12e-16,9;UBERON:0005409,1.00e-14,47;UBERON:0000485,1.49e-13,11;UBERON:0000331,2.91e-13,3;UBERON:0002116,2.91e-13,3;UBERON:0001204,2.91e-13,3;UBERON:0001168,2.91e-13,3;UBERON:0002108,4.55e-10,4;UBERON:0001962,6.22e-09,2;UBERON:0001961,6.22e-09,2;UBERON:0001744,6.22e-09,2;UBERON:0001007,2.51e-08,116;UBERON:0001555,2.51e-08,116;UBERON:0007026,2.51e-08,116;UBERON:0004119,3.94e-08,118;UBERON:0000925,3.94e-08,118;UBERON:0006595,3.94e-08,118 | |||
|phase1_expression=0,15.0059425284925,9.09998478779072,8.46899791659124,9.5170188689806,0.671517087647559,1.86890112476421,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,1.43993180514066,2.2940928106717,4.01962374880514,6.46142994238612,5.17130958446134,5.70070258369122,3.2763916868791,3.10422714917427,0,0,0,0.866554859253824,1.32987716286794,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153606533256243,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,0.679971333707751,0,1.29955283489534,0.448026887097336,0.561777680527007,0,0,0,0,0,0,0,0.216491041011214,0,0,1.59857431606684,0,0,0,0,0,0,0.117588707135705,0.251333182659351,0,0,0,0,0,0,0,0,0,1.02182822083437,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0,0,0.991256348951394,0.793351699990633,0,0,0,0,0.22237804384487,0.190225626112559,1.89811624617805,0.329397909448022,1.00534083520108,0.198956472041151,0.19496408711912,2.69645822596266,0.432276099749388,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0.889357881261447,0,0,0,0,0,0,0.287696137450811,0.324270453550071,0.549122826376163,0,0.372140947668503,0.936113019343682,0.757736633841335,1.25578189465339,0.964887042726734,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0.163863314715738,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0.138199973804424,0,0,0,0,0,0,0,0.0826534557253359,0,1.03691978633434,0,0,0,0,0,0,0,0,0,0,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0,0,0.412085900803307,0,0,0,0,0,0.0941093804153306,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0.191288332068843,0,0 | |||
|short_description=p6@H2-D1 | |||
}} |
Revision as of 14:24, 13 September 2013
Short description: | p6@H2-D1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_H2-D1_5end |
Coexpression cluster: | MCL_coexpression_mm9:24 |
Association with transcript: | -259bp_to_uc008chh.1_5end |
EntrezGene: | H2-D1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 4.44e-18 | 6 |
gut absorptive cell | 4.44e-18 | 6 |
enterocyte | 4.44e-18 | 6 |
intestinal epithelial cell | 1.12e-16 | 9 |
epithelial cell of alimentary canal | 1.12e-16 | 9 |
columnar/cuboidal epithelial cell | 1.80e-15 | 7 |
epithelial cell | 2.36e-15 | 25 |
M cell of gut | 1.81e-13 | 3 |
endo-epithelial cell | 8.57e-10 | 15 |
endodermal cell | 1.52e-09 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 4.04e-32 | 15 |
intestinal mucosa | 3.28e-25 | 13 |
wall of intestine | 3.28e-25 | 13 |
gastrointestinal system mucosa | 3.28e-25 | 13 |
intestine | 2.47e-20 | 31 |
organ component layer | 2.12e-19 | 24 |
epithelium of mucosa | 1.12e-16 | 9 |
gastrointestinal system epithelium | 1.12e-16 | 9 |
intestinal epithelium | 1.12e-16 | 9 |
gastrointestinal system | 1.00e-14 | 47 |
simple columnar epithelium | 1.49e-13 | 11 |
ileal mucosa | 2.91e-13 | 3 |
ileum | 2.91e-13 | 3 |
mucosa of small intestine | 2.91e-13 | 3 |
wall of small intestine | 2.91e-13 | 3 |
small intestine | 4.55e-10 | 4 |
gut-associated lymphoid tissue | 6.22e-09 | 2 |
mucosa-associated lymphoid tissue | 6.22e-09 | 2 |
lymphoid tissue | 6.22e-09 | 2 |
digestive system | 2.51e-08 | 116 |
digestive tract | 2.51e-08 | 116 |
primitive gut | 2.51e-08 | 116 |
endoderm-derived structure | 3.94e-08 | 118 |
endoderm | 3.94e-08 | 118 |
presumptive endoderm | 3.94e-08 | 118 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.