FFCP PHASE1:Mm9::chr17:56092151..56092162,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=50498|HGNC=|MCL_coexpression_id=116|UniProt=O35228,Q3U1K3|association_with_transcript=105bp_to_ENSMUST00000003274,NM_015766,uc008daj.1_5end|description=CAGE_peak_3_at_Ebi3_5end|id=chr17:56092151..56092162,+|ontology_enrichment_celltype=CL:0000557!7.01e-08!7|ontology_enrichment_celltype_v019_2=CL:0002194,4.85e-19,4;CL:0000766,4.85e-19,4;CL:0000234,4.85e-19,4;CL:0000576,4.85e-19,4;CL:0000235,4.85e-19,4;CL:0000864,4.85e-19,4;CL:0002009,4.85e-19,4;CL:0000040,4.85e-19,4;CL:0000559,4.85e-19,4;CL:0000557,1.43e-16,7;CL:0002092,4.13e-15,3;CL:0002540,4.13e-15,3;CL:0000473,5.64e-11,7;CL:0002476,6.66e-11,2;CL:0000878,7.94e-10,2;CL:0000129,7.94e-10,2;CL:0000034,2.65e-07,97;CL:0000763,3.62e-07,16|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,3.32e-15,3;DOID:4045,3.32e-15,3;DOID:0050686,7.55e-08,6|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.53e-19,32;UBERON:0002371,6.11e-18,16;UBERON:0001474,3.82e-16,22;UBERON:0004765,3.82e-16,22;UBERON:0001434,3.82e-16,22;UBERON:0002390,3.35e-07,45;UBERON:0003061,3.35e-07,45|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0,0,0,0,0.315462165358238,0,0,0,0.0992909512008853,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,10.8818223991596,4.6880120671428,10.9939986234498,9.41170380849623,11.6117732442936,6.311634589405,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0,0.515672092277442,0,0,0,0,0,4.94944844504769,4.94433181283487,11.3676818391376,2.09720077362883,1.15265491596466,0,0.135005938331691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0.230615497256059,0,0.117588707135705,0.125666591329675,0,0.144599356919912,3.5384422077995,0.161766849947409,0.220841518460394,0,0,0,0,0,0.958520996047362,0,0.508280908292259,0,0,0,0,0,0,0,0.101839363850316,0.124406970610093,0,0,0,0,0,0.150704817835715,0,0,0,0,0.215567992932842,0,0,0.219195732427575,0,0,0,0,2.1066395619397,0.51469581422943,0.852490498186778,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0.219550115291051,0.402619256281115,0,0,0,0,0,0,0.128867461322093,0,0,0,0,0,0.502670417600539,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0.189667900953082,0,0,0,0,0,0.0632365371242573,0,0,0,0,0.166845105716094,0,0,0.608580364165509,0.482354319504834,0,0.863088412352432,0.648540907100142,0,0,0.372140947668503,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0.221464689648775,0,0.163863314715738,0.518054945597687,0,6.03165135757089,19.5806046174735,0.491764273019036,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.178065603667255,0.162886959353576,0,0,0.485561272309963,0.302323556964751,0.377210159511796,0,0.307435147943927,0,0.363533729477506,0.712994756769443,0,0,0,0,0.18006109403131,0.129358683782755,0,0,0,0,0.304464949114599,0,0,0,0,0.161464426695906,0.180938774784468,0.119372344003136,0.164140899745061,0.291480836629851,0,0,1.03193433981611,0.555583582109135,0.188368457004691,0.410082683163076,0.457556346413045,1.5298058699447,1.11961161858926,2.3493995546752,0,0,0,0,0,0,0.269728692769641,0.41326727862668,0,0.129614973291793,0.621339313086926,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0.316011120628178,0,0,0,0,0,0.360586348559907,0.295379054349154,0.201932899896295,0.304827226619999,0.302478555410522,0.292373642219257,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0.222246727801615,0,0.64183841918363,0,0,0,0.187283014939765,0.0640251524048693,0.0574354689556133,0.476293691283074,0.115884325944855,0,0.412085900803307,0,0,0,0,0,0,0.169229215783353,0,0,0,0,0.355905054372522,0.0985044823755635,0,0.154936841185966,0,0,0.233931608445408,0.644613162144895,0,0.220591419119515,0|short_description=p3@Ebi3}} | ||
|EntrezGene=50498 | |||
|HGNC= | |||
|MCL_coexpression_id=116 | |||
|UniProt=O35228,Q3U1K3 | |||
|association_with_transcript=105bp_to_ENSMUST00000003274,NM_015766,uc008daj.1_5end | |||
|description=CAGE_peak_3_at_Ebi3_5end | |||
|id=chr17:56092151..56092162,+ | |||
|ontology_enrichment_celltype=CL:0000557!7.01e-08!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,4.85e-19,4;CL:0000766,4.85e-19,4;CL:0000234,4.85e-19,4;CL:0000576,4.85e-19,4;CL:0000235,4.85e-19,4;CL:0000864,4.85e-19,4;CL:0002009,4.85e-19,4;CL:0000040,4.85e-19,4;CL:0000559,4.85e-19,4;CL:0000557,1.43e-16,7;CL:0002092,4.13e-15,3;CL:0002540,4.13e-15,3;CL:0000473,5.64e-11,7;CL:0002476,6.66e-11,2;CL:0000878,7.94e-10,2;CL:0000129,7.94e-10,2;CL:0000034,2.65e-07,97;CL:0000763,3.62e-07,16 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,3.32e-15,3;DOID:4045,3.32e-15,3;DOID:0050686,7.55e-08,6 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.53e-19,32;UBERON:0002371,6.11e-18,16;UBERON:0001474,3.82e-16,22;UBERON:0004765,3.82e-16,22;UBERON:0001434,3.82e-16,22;UBERON:0002390,3.35e-07,45;UBERON:0003061,3.35e-07,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0,0,0,0,0.315462165358238,0,0,0,0.0992909512008853,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,10.8818223991596,4.6880120671428,10.9939986234498,9.41170380849623,11.6117732442936,6.311634589405,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0,0.515672092277442,0,0,0,0,0,4.94944844504769,4.94433181283487,11.3676818391376,2.09720077362883,1.15265491596466,0,0.135005938331691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0.230615497256059,0,0.117588707135705,0.125666591329675,0,0.144599356919912,3.5384422077995,0.161766849947409,0.220841518460394,0,0,0,0,0,0.958520996047362,0,0.508280908292259,0,0,0,0,0,0,0,0.101839363850316,0.124406970610093,0,0,0,0,0,0.150704817835715,0,0,0,0,0.215567992932842,0,0,0.219195732427575,0,0,0,0,2.1066395619397,0.51469581422943,0.852490498186778,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0.219550115291051,0.402619256281115,0,0,0,0,0,0,0.128867461322093,0,0,0,0,0,0.502670417600539,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0.189667900953082,0,0,0,0,0,0.0632365371242573,0,0,0,0,0.166845105716094,0,0,0.608580364165509,0.482354319504834,0,0.863088412352432,0.648540907100142,0,0,0.372140947668503,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0.221464689648775,0,0.163863314715738,0.518054945597687,0,6.03165135757089,19.5806046174735,0.491764273019036,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.178065603667255,0.162886959353576,0,0,0.485561272309963,0.302323556964751,0.377210159511796,0,0.307435147943927,0,0.363533729477506,0.712994756769443,0,0,0,0,0.18006109403131,0.129358683782755,0,0,0,0,0.304464949114599,0,0,0,0,0.161464426695906,0.180938774784468,0.119372344003136,0.164140899745061,0.291480836629851,0,0,1.03193433981611,0.555583582109135,0.188368457004691,0.410082683163076,0.457556346413045,1.5298058699447,1.11961161858926,2.3493995546752,0,0,0,0,0,0,0.269728692769641,0.41326727862668,0,0.129614973291793,0.621339313086926,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0.316011120628178,0,0,0,0,0,0.360586348559907,0.295379054349154,0.201932899896295,0.304827226619999,0.302478555410522,0.292373642219257,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0.222246727801615,0,0.64183841918363,0,0,0,0.187283014939765,0.0640251524048693,0.0574354689556133,0.476293691283074,0.115884325944855,0,0.412085900803307,0,0,0,0,0,0,0.169229215783353,0,0,0,0,0.355905054372522,0.0985044823755635,0,0.154936841185966,0,0,0.233931608445408,0.644613162144895,0,0.220591419119515,0 | |||
|short_description=p3@Ebi3 | |||
}} |
Revision as of 14:56, 13 September 2013
Short description: | p3@Ebi3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ebi3_5end |
Coexpression cluster: | MCL_coexpression_mm9:116 |
Association with transcript: | 105bp_to_ENSMUST00000003274, NM_015766, uc008daj.1_5end |
EntrezGene: | Ebi3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 4.85e-19 | 4 |
myeloid leukocyte | 4.85e-19 | 4 |
phagocyte | 4.85e-19 | 4 |
monocyte | 4.85e-19 | 4 |
macrophage | 4.85e-19 | 4 |
tissue-resident macrophage | 4.85e-19 | 4 |
macrophage dendritic cell progenitor | 4.85e-19 | 4 |
monoblast | 4.85e-19 | 4 |
promonocyte | 4.85e-19 | 4 |
granulocyte monocyte progenitor cell | 1.43e-16 | 7 |
bone marrow cell | 4.13e-15 | 3 |
mesenchymal stem cell of the bone marrow | 4.13e-15 | 3 |
defensive cell | 5.64e-11 | 7 |
bone marrow macrophage | 6.66e-11 | 2 |
central nervous system macrophage | 7.94e-10 | 2 |
microglial cell | 7.94e-10 | 2 |
stem cell | 2.65e-07 | 97 |
myeloid cell | 3.62e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.53e-19 | 32 |
bone marrow | 6.11e-18 | 16 |
bone element | 3.82e-16 | 22 |
skeletal element | 3.82e-16 | 22 |
skeletal system | 3.82e-16 | 22 |
hematopoietic system | 3.35e-07 | 45 |
blood island | 3.35e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 3.32e-15 | 3 |
muscle cancer | 3.32e-15 | 3 |
organ system cancer | 7.55e-08 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.