FFCP PHASE1:Mm9::chr17:73748629..73748642,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=381122|HGNC=|MCL_coexpression_id=110|UniProt=Q3UW68|association_with_transcript=0bp_to_ENSMUST00000095208,NM_001033444,uc008dnj.1_5end|description=CAGE_peak_1_at_Capn13_5end|id=chr17:73748629..73748642,-|ontology_enrichment_celltype=CL:0002563!5.34e-09!9;CL:0002251!5.34e-09!9;CL:0002076!8.60e-08!15|ontology_enrichment_celltype_v019_2=CL:0002563,4.52e-13,9;CL:0002251,4.52e-13,9;CL:0002076,5.78e-09,15;CL:0000066,1.56e-08,25;CL:0000239,8.16e-08,6;CL:0000677,8.16e-08,6;CL:0000584,8.16e-08,6;CL:0002250,4.89e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!3.13e-17!59;UBERON:0000160!1.01e-15!43;UBERON:0000344!8.02e-14!15;UBERON:0001007!1.77e-12!128;UBERON:0001555!1.77e-12!128;UBERON:0007026!1.77e-12!128;UBERON:0001242!3.69e-12!13;UBERON:0000060!3.69e-12!13;UBERON:0001262!3.69e-12!13;UBERON:0004786!3.69e-12!13;UBERON:0004119!5.61e-12!130;UBERON:0000925!5.61e-12!130;UBERON:0006595!5.61e-12!130;UBERON:0004921!2.40e-11!126;UBERON:0004185!2.40e-11!126;UBERON:0003350!5.34e-09!9;UBERON:0004808!5.34e-09!9;UBERON:0001277!5.34e-09!9;UBERON:0000485!8.05e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.67e-41,47;UBERON:0000160,5.80e-40,31;UBERON:0000344,2.12e-22,15;UBERON:0001242,3.51e-19,13;UBERON:0001262,3.51e-19,13;UBERON:0004786,3.51e-19,13;UBERON:0001007,3.80e-18,116;UBERON:0001555,3.80e-18,116;UBERON:0007026,3.80e-18,116;UBERON:0004119,1.12e-17,118;UBERON:0000925,1.12e-17,118;UBERON:0006595,1.12e-17,118;UBERON:0004921,3.67e-16,114;UBERON:0003350,4.52e-13,9;UBERON:0004808,4.52e-13,9;UBERON:0001277,4.52e-13,9;UBERON:0004923,1.13e-12,24;UBERON:0000485,2.08e-10,11;UBERON:0002108,5.10e-08,4|phase1_expression=0,2.79180326111489,0.909998478779072,3.62957053568196,3.00537437967808,10.2406355866253,13.5495331545405,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,5.75972722056264,5.27641346454491,4.59385571292016,4.30761996159075,5.60225204983311,4.56056206695297,8.06496415231778,3.32595765982957,0,0,0,12.7094712690561,12.1351291111699,9.80012910059372,0,0,0,0,0,0.485510353031154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68533304158102,0,0,0,0,0,0,0,0.649473123033642,0.760079596425296,2.02209778005913,4.79572294820052,0,0,0,0,0,0,0,0.125666591329675,0,0.144599356919912,0,0,0,0,33.550517019262,0,0,22.7356779135646,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0.252722758433675,3.36706969418358,0,0,0,0,0.0680364991513279,0,0,0.258703370739016,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96502539580558,7.1401652999157,0,0.232236671860439,0.644337306610467,1.21010114774006,1.11189021922435,2.47293313946327,9.49058123089023,2.14108641141214,6.53471542880701,6.36660710531683,8.38345574612217,9.88701349519644,14.4812493416045,11.5501938487533,0,0.571242563048644,0,0,0.193952487167626,0.561086559122548,0.885311519739602,1.18088118383682,1.72698600625512,1.48076596706161,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0.358794827043824,0,2.21703828199926,0,0,0,0,0,0,0,0.157635144106191,0,0.478364305972461,0.491589944147214,0.690739927463582,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441056796109924,0,0,0,0,0.164140899745061,12.2421951384537,0,0,0,0,0,0,0,0,0,0,99.2857442735718,0,0,0.756037385752609,1.46361807210128,12.2283035697859,8.63131816862852,14.2163943847578,85.3324370867937,1.42576470620972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0.39736270956253,0,0.295379054349154,0.100966449948148,0.0762068066549998,0.403304740547362,0.38983152295901,0.0962118416403295,0,0,0,0,0,32.2626622033758,0.187682475451182,0,2.78678892802786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0.183843508450014,0,0.412070114477788,0.320919209591815,0.252697211763798,0,0.377252682772152,0.187283014939765,0.0640251524048693,0.229741875822453,0,0.231768651889711,0,0,0.147198920134397,0.342869252385415,0,0.238436189947321,0.436039249896986,0.470546902076653,0.0846146078916765,0.548783918618318,0.263069711437843,0.271608227691724,0,0.118635018124174,0,0.409231043169689,0.309873682371932,0.192906610981141,0,0.467863216890817,0.214871054048298,0.191288332068843,0,0.231867835620421|short_description=p1@Capn13}} | ||
|EntrezGene=381122 | |||
|HGNC= | |||
|MCL_coexpression_id=110 | |||
|UniProt=Q3UW68 | |||
|association_with_transcript=0bp_to_ENSMUST00000095208,NM_001033444,uc008dnj.1_5end | |||
|description=CAGE_peak_1_at_Capn13_5end | |||
|id=chr17:73748629..73748642,- | |||
|ontology_enrichment_celltype=CL:0002563!5.34e-09!9;CL:0002251!5.34e-09!9;CL:0002076!8.60e-08!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,4.52e-13,9;CL:0002251,4.52e-13,9;CL:0002076,5.78e-09,15;CL:0000066,1.56e-08,25;CL:0000239,8.16e-08,6;CL:0000677,8.16e-08,6;CL:0000584,8.16e-08,6;CL:0002250,4.89e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!3.13e-17!59;UBERON:0000160!1.01e-15!43;UBERON:0000344!8.02e-14!15;UBERON:0001007!1.77e-12!128;UBERON:0001555!1.77e-12!128;UBERON:0007026!1.77e-12!128;UBERON:0001242!3.69e-12!13;UBERON:0000060!3.69e-12!13;UBERON:0001262!3.69e-12!13;UBERON:0004786!3.69e-12!13;UBERON:0004119!5.61e-12!130;UBERON:0000925!5.61e-12!130;UBERON:0006595!5.61e-12!130;UBERON:0004921!2.40e-11!126;UBERON:0004185!2.40e-11!126;UBERON:0003350!5.34e-09!9;UBERON:0004808!5.34e-09!9;UBERON:0001277!5.34e-09!9;UBERON:0000485!8.05e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.67e-41,47;UBERON:0000160,5.80e-40,31;UBERON:0000344,2.12e-22,15;UBERON:0001242,3.51e-19,13;UBERON:0001262,3.51e-19,13;UBERON:0004786,3.51e-19,13;UBERON:0001007,3.80e-18,116;UBERON:0001555,3.80e-18,116;UBERON:0007026,3.80e-18,116;UBERON:0004119,1.12e-17,118;UBERON:0000925,1.12e-17,118;UBERON:0006595,1.12e-17,118;UBERON:0004921,3.67e-16,114;UBERON:0003350,4.52e-13,9;UBERON:0004808,4.52e-13,9;UBERON:0001277,4.52e-13,9;UBERON:0004923,1.13e-12,24;UBERON:0000485,2.08e-10,11;UBERON:0002108,5.10e-08,4 | |||
|phase1_expression=0,2.79180326111489,0.909998478779072,3.62957053568196,3.00537437967808,10.2406355866253,13.5495331545405,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,5.75972722056264,5.27641346454491,4.59385571292016,4.30761996159075,5.60225204983311,4.56056206695297,8.06496415231778,3.32595765982957,0,0,0,12.7094712690561,12.1351291111699,9.80012910059372,0,0,0,0,0,0.485510353031154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68533304158102,0,0,0,0,0,0,0,0.649473123033642,0.760079596425296,2.02209778005913,4.79572294820052,0,0,0,0,0,0,0,0.125666591329675,0,0.144599356919912,0,0,0,0,33.550517019262,0,0,22.7356779135646,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0.252722758433675,3.36706969418358,0,0,0,0,0.0680364991513279,0,0,0.258703370739016,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96502539580558,7.1401652999157,0,0.232236671860439,0.644337306610467,1.21010114774006,1.11189021922435,2.47293313946327,9.49058123089023,2.14108641141214,6.53471542880701,6.36660710531683,8.38345574612217,9.88701349519644,14.4812493416045,11.5501938487533,0,0.571242563048644,0,0,0.193952487167626,0.561086559122548,0.885311519739602,1.18088118383682,1.72698600625512,1.48076596706161,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0.358794827043824,0,2.21703828199926,0,0,0,0,0,0,0,0.157635144106191,0,0.478364305972461,0.491589944147214,0.690739927463582,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441056796109924,0,0,0,0,0.164140899745061,12.2421951384537,0,0,0,0,0,0,0,0,0,0,99.2857442735718,0,0,0.756037385752609,1.46361807210128,12.2283035697859,8.63131816862852,14.2163943847578,85.3324370867937,1.42576470620972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0.39736270956253,0,0.295379054349154,0.100966449948148,0.0762068066549998,0.403304740547362,0.38983152295901,0.0962118416403295,0,0,0,0,0,32.2626622033758,0.187682475451182,0,2.78678892802786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0.183843508450014,0,0.412070114477788,0.320919209591815,0.252697211763798,0,0.377252682772152,0.187283014939765,0.0640251524048693,0.229741875822453,0,0.231768651889711,0,0,0.147198920134397,0.342869252385415,0,0.238436189947321,0.436039249896986,0.470546902076653,0.0846146078916765,0.548783918618318,0.263069711437843,0.271608227691724,0,0.118635018124174,0,0.409231043169689,0.309873682371932,0.192906610981141,0,0.467863216890817,0.214871054048298,0.191288332068843,0,0.231867835620421 | |||
|short_description=p1@Capn13 | |||
}} |
Revision as of 15:17, 13 September 2013
Short description: | p1@Capn13 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Capn13_5end |
Coexpression cluster: | MCL_coexpression_mm9:110 |
Association with transcript: | 0bp_to_ENSMUST00000095208, NM_001033444, uc008dnj.1_5end |
EntrezGene: | Capn13 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 4.52e-13 | 9 |
epithelial cell of alimentary canal | 4.52e-13 | 9 |
endo-epithelial cell | 5.78e-09 | 15 |
epithelial cell | 1.56e-08 | 25 |
brush border epithelial cell | 8.16e-08 | 6 |
gut absorptive cell | 8.16e-08 | 6 |
enterocyte | 8.16e-08 | 6 |
intestinal crypt stem cell | 4.89e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 3.67e-41 | 47 |
intestine | 5.80e-40 | 31 |
mucosa | 2.12e-22 | 15 |
intestinal mucosa | 3.51e-19 | 13 |
wall of intestine | 3.51e-19 | 13 |
gastrointestinal system mucosa | 3.51e-19 | 13 |
digestive system | 3.80e-18 | 116 |
digestive tract | 3.80e-18 | 116 |
primitive gut | 3.80e-18 | 116 |
endoderm-derived structure | 1.12e-17 | 118 |
endoderm | 1.12e-17 | 118 |
presumptive endoderm | 1.12e-17 | 118 |
subdivision of digestive tract | 3.67e-16 | 114 |
epithelium of mucosa | 4.52e-13 | 9 |
gastrointestinal system epithelium | 4.52e-13 | 9 |
intestinal epithelium | 4.52e-13 | 9 |
organ component layer | 1.13e-12 | 24 |
simple columnar epithelium | 2.08e-10 | 11 |
small intestine | 5.10e-08 | 4 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.