FFCP PHASE1:Mm9::chr18:34532967..34533097,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13476|HGNC=|MCL_coexpression_id=85|UniProt=G3X8R0,Q9CQG4|association_with_transcript=0bp_to_ENSMUST00000006027,NM_007874,uc008eki.2_5end|description=CAGE_peak_1_at_Reep5_5end|id=chr18:34532967..34533097,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001264!8.91e-09!12;UBERON:0003922!8.91e-09!12;UBERON:0002114!8.91e-09!12;UBERON:0003923!8.91e-09!12;UBERON:0003924!8.91e-09!12;UBERON:0003921!8.91e-09!12;UBERON:0002075!1.95e-08!19;UBERON:0001045!6.82e-08!13;UBERON:0004121!1.46e-07!102;UBERON:0000924!1.46e-07!102;UBERON:0006601!1.46e-07!102|ontology_enrichment_uberon_v019_2=UBERON:0010314,6.14e-09,92;UBERON:0001264,8.91e-09,12;UBERON:0002075,1.95e-08,19;UBERON:0000073,4.07e-07,54|phase1_expression=115.307169915452,10.4692622291808,13.1949779422965,1.20985684522732,1.50268718983904,52.0425742926858,39.4805362606438,81.4768170916346,29.56563165185,33.7052917903671,14.5535272991679,17.310558501988,46.0529963514943,50.7912538054375,115.255977588219,140.922786103319,249.743590491748,99.0551199224866,97.7625911608917,110.765699119286,117.189653828174,94.6242764944437,91.1587264094885,43.3579465770132,67.446328633748,14.9300310669905,25.4149577733854,23.4863643627619,22.9928337542212,21.926621289114,47.2285987695799,83.1890182232117,94.7199772880238,110.937176710807,5.77703239502549,7.14808975041517,5.9209113316087,208.42875210698,288.312742129282,164.909979351746,169.998900040963,172.127462209528,197.117203330648,180.158346523051,190.183122967809,158.951487372016,262.883491700941,140.190175552627,327.991470822566,305.060511647551,170.643447961317,172.503077237966,83.7235204228104,57.3036092188962,39.9951620979532,192.687317590924,197.994606997681,186.157625312157,160.234637000801,159.226284760882,121.695629473186,232.447348999425,239.220300153896,457.149056378951,495.422047646054,480.99503781851,277.729302450561,368.465354803371,52.5706334403982,66.0179038441967,63.307813366766,398.197472258902,352.727059899727,72.8820255328977,69.2962755461849,67.1029714225315,230.142191288722,271.463280769109,252.529140673264,153.647525205676,183.981651284446,135.437476344758,325.806559834612,270.126052815206,265.410556388319,292.860813960826,260.824919223957,205.598588745307,164.628744306342,214.396516022951,79.133005415558,74.8568772973806,91.1161587168386,24.8263468153396,68.8763002494529,45.2507155968309,170.499526039947,339.156341930335,373.05270260972,383.020098769209,104.083287214967,132.176271736747,99.3740434855918,142.213340630666,154.358112240996,149.735680495783,159.745724624672,102.08038846884,173.488382043605,356.706460172774,149.197381018877,246.00810647621,313.406460770984,271.300752994721,253.52125258458,360.03478415952,121.867119093046,506.097749219691,188.422047565323,142.840128503562,165.631138845295,137.219696637268,85.7402101603362,140.827563362554,186.198122357162,95.2854815928046,98.1285869703487,121.180351660668,96.19216189431,281.157030162852,196.725259212009,182.324464915766,259.867358687453,240.883960805171,309.396398349185,265.102223852716,85.8505837258166,135.852411906222,78.3440551144392,198.657111956831,49.5758887687901,62.5333724059046,80.4877720229911,66.4608246655503,61.7091047302544,58.8041976107461,62.0305416585405,140.734633682025,44.1914385512327,57.6773544511849,75.1311300180062,116.173738186615,92.8677812413497,130.942814612335,112.974392887961,64.8851709828288,110.247470408178,114.262470758934,124.747776234665,104.598515130428,87.0091682529867,117.760588195504,150.096162361023,141.079954162889,174.630371788512,191.375436529586,222.666923161684,190.911334770322,291.600054046687,356.735899443874,374.618968911399,381.581967180117,386.62775302754,367.725587403419,235.314452443258,162.48638294689,52.2061677114401,21.4204958997471,46.2835503661458,41.3381275911581,70.6193688045071,113.144457313695,81.3903640472225,82.3676961067381,58.8416036315194,47.4332989605151,71.8818697168771,76.2003287917608,79.545347544601,85.387843822151,46.685818772934,64.1234899879062,118.921773897582,71.7480659189097,60.8621772634634,61.0953983535943,56.4401737657791,72.3100303069184,71.8367061731563,60.0773302276981,85.4073079457079,101.185674415876,44.1714414359852,65.570126546425,59.5573755193005,78.2520151099291,75.8696853993001,102.259115735025,98.0309529358466,104.146001757193,121.925690534827,95.5473717894524,94.887016308054,99.3616330274904,65.5279113540577,45.4641980304801,50.2312757861354,55.9634484781506,166.277871149944,59.8792861194732,54.2673371551946,59.7502701928662,58.2031815755485,73.0327282446317,92.3609326637733,113.762916701097,94.896356751927,104.088404134924,106.834695000516,118.637039854194,143.328534948693,144.070462347186,269.916398251297,309.482334092846,280.79739989387,238.961222299898,313.073650476194,340.49994955035,84.7543667597412,249.188805150716,57.4224959337587,69.8885352290983,65.2732895130381,49.7055099741308,56.3680645428457,45.2922449262132,60.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| ||
|EntrezGene=13476 | |||
|HGNC= | |||
|MCL_coexpression_id=85 | |||
|UniProt=G3X8R0,Q9CQG4 | |||
|association_with_transcript=0bp_to_ENSMUST00000006027,NM_007874,uc008eki.2_5end | |||
|description=CAGE_peak_1_at_Reep5_5end | |||
|id=chr18:34532967..34533097,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001264!8.91e-09!12;UBERON:0003922!8.91e-09!12;UBERON:0002114!8.91e-09!12;UBERON:0003923!8.91e-09!12;UBERON:0003924!8.91e-09!12;UBERON:0003921!8.91e-09!12;UBERON:0002075!1.95e-08!19;UBERON:0001045!6.82e-08!13;UBERON:0004121!1.46e-07!102;UBERON:0000924!1.46e-07!102;UBERON:0006601!1.46e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,6.14e-09,92;UBERON:0001264,8.91e-09,12;UBERON:0002075,1.95e-08,19;UBERON:0000073,4.07e-07,54 | |||
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| |||
|short_description=p1@Reep5 | |||
}} | |||
Revision as of 15:57, 13 September 2013
| Short description: | p1@Reep5 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Reep5_5end |
| Coexpression cluster: | MCL_coexpression_mm9:85 |
| Association with transcript: | 0bp_to_ENSMUST00000006027, NM_007874, uc008eki.2_5end |
| EntrezGene: | Reep5 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| structure with developmental contribution from neural crest | 6.14e-09 | 92 |
| pancreas | 8.91e-09 | 12 |
| viscus | 1.95e-08 | 19 |
| regional part of nervous system | 4.07e-07 | 54 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
