FFCP PHASE1:Mm9::chr19:4439369..4439386,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=11854|HGNC=|MCL_coexpression_id=3149|UniProt=G3X9Y4|association_with_transcript=34bp_to_ENSMUST00000117462_5end|description=CAGE_peak_2_at_Rhod_5end|id=chr19:4439369..4439386,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000066,7.19e-10,25;CL:0000223,1.23e-08,20;CL:0002453,6.31e-08,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000160,5.89e-11,31;UBERON:0005409,1.23e-08,47;UBERON:0000344,2.96e-08,15;UBERON:0004119,7.78e-07,118;UBERON:0000925,7.78e-07,118;UBERON:0006595,7.78e-07,118|phase1_expression=0.320297694209588,24.4282785347553,23.6599604482559,6.0492842261366,10.0179145989269,2.01455126294268,1.63528848416868,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0.198581902401771,0,6.23970448894286,6.19405058881359,16.6527269593356,11.1998119001359,7.75696437669201,4.18051522804023,3.2763916868791,5.76499327703792,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,3.39921408534059,3.75094645512204,2.20256102594018,14.0830441982647,2.8343270329458,4.61340983742391,6.22175677037707,4.33957907038624,4.31257693094915,0,0.725362142011344,0,2.05807548828758,0.85960031981627,1.03134418455488,0.404632921719196,0,0,11.5207140903505,6.22506357277798,2.6996991518442,2.96659908770092,0.7104801149461,4.49400165777607,5.37905627450176,0.103689612308478,0,0,0.285650984403804,0.220868540951614,0,0.0958454710182364,0,0,0.127687338085188,0,0,0.0914876436024097,0,0,0.56276261003168,0.15279824777681,0,0.142371680799103,0,0.151452386666368,0.68014404096107,2.6087803983151,1.72084775396277,5.439770669662,1.07940638327563,1.94932925234301,3.13618820968135,0.842666520790511,2.55645483867087,5.71529210126311,3.5333957451034,0,7.69958864485907,5.09610479413291,42.6640021891999,1.08245520505607,1.77351905832569,0.505524445014783,1.25602267690966,0.258937883647172,1.1875371125186,0.346970653532272,0.304465478312141,1.15307748628029,1.05505848386836,1.64624189989987,0.502666365318702,1.97755974187499,0,0,0.161766849947409,0.662524555381181,0,3.72783522436244,1.75668478206928,2.72280718857492,4.59822699375465,0,0,0,0.149790639404823,0,0.125654352112864,0,0,0.20778804455956,0.324482526135515,0.407357455401265,0.497627882440372,1.0108910337347,0.420883711772948,0.780722657776222,1.60931473103431,1.26043490863744,0.753524089178575,0.748401490664606,0.384341160854549,0.187403449119458,1.03481348295606,0.646703978798527,0.189106080167819,0.175951124163949,0.876782929710299,1.66828349535359,1.39300866608867,1.85203922767149,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0.36012412292203,0.23674473558521,0,0.771335564436891,0.232533944750408,0.268273401399619,0.467061369468678,0.329119699826961,0.164167464079095,0.243206428637567,0.146199987425332,0,0,0.420579897128254,0.720332286654991,25.1118275067686,5.02456076660734,0,0,0.257734922644187,0.201683524623343,0.444756087689741,0.190225626112559,7.11793592316767,2.47048432086016,2.26201687920243,3.18330355265841,2.9244613067868,5.39291645192533,6.70027954611552,4.38110801159608,1.51734320762465,0.799739588268102,0,0.814605311381257,0.775809948670503,0.49095073923223,1.26473074248515,0.738050739898011,1.41298855057237,1.1105744752962,2.07516838961004,0.166845105716094,0.196558995113203,0.449724224769707,0.202860121388503,0.482354319504834,0,0.287696137450811,1.13494658742525,0.823684239564244,0,1.86070473834252,1.24815069245824,3.03094653536534,2.87035861635059,3.85954817090694,0.369506380333209,0.568474235311454,0.162964976442026,0.169745085775188,0,0.837531287209079,0.238043640886014,0.195133647857799,0.157635144106191,0,0.159454768657487,0.655453258862952,0.172684981865896,0.433947175744535,0,0,0.491764273019036,0,0,0.468846746368813,0.819674726883377,0.504941854408746,1.89304931649754,1.95219372148319,0,0.477937595905104,0.222798674082394,0.566153061577665,2.02405350837447,1.46127928955656,0.790575555893047,0,1.13552068166615,0.534196811001766,0.488660878060728,0.164970122972535,0,0.971122544619926,0.302323556964751,0.188605079755898,0,0,0.516856586336442,0.363533729477506,0,0,0,0,0,1.08036656418786,0.776152102696527,0.214337035031592,0,0.713475270408282,0.658196082408484,0.608929898229199,2.11204537257339,1.48282449604674,0.220528398054962,2.96795255294664,2.9063596805263,1.56813604813205,1.79058516004705,2.79039529566604,6.70405924248657,0.18542530201051,0,0.619160603889667,0.185194527369712,0,0,0.228778173206523,0.169978429993855,0.279902904647316,0.138199973804424,1.90934123603023,0.474503990371703,0.203319467126849,0.324016022465404,0.836353184057875,2.18362563746178,1.61837215661785,1.48776220305605,1.57053565190418,1.42576470620972,0,0,0,0.496375471371293,0.583353565032143,0.387479470433193,0.168956125490778,0.234714477291508,0.5208175393758,0,0,0,0.316011120628178,0.405450430580328,0.308132871494482,0.129920822977795,0,0.198681354781265,0.120195449519969,0.295379054349154,0.100966449948148,0,0,0.0974578807397524,0.0962118416403295,0,2.94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| ||
|EntrezGene=11854 | |||
|HGNC= | |||
|MCL_coexpression_id=3149 | |||
|UniProt=G3X9Y4 | |||
|association_with_transcript=34bp_to_ENSMUST00000117462_5end | |||
|description=CAGE_peak_2_at_Rhod_5end | |||
|id=chr19:4439369..4439386,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.19e-10,25;CL:0000223,1.23e-08,20;CL:0002453,6.31e-08,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,5.89e-11,31;UBERON:0005409,1.23e-08,47;UBERON:0000344,2.96e-08,15;UBERON:0004119,7.78e-07,118;UBERON:0000925,7.78e-07,118;UBERON:0006595,7.78e-07,118 | |||
|phase1_expression=0.320297694209588,24.4282785347553,23.6599604482559,6.0492842261366,10.0179145989269,2.01455126294268,1.63528848416868,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0.198581902401771,0,6.23970448894286,6.19405058881359,16.6527269593356,11.1998119001359,7.75696437669201,4.18051522804023,3.2763916868791,5.76499327703792,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,3.39921408534059,3.75094645512204,2.20256102594018,14.0830441982647,2.8343270329458,4.61340983742391,6.22175677037707,4.33957907038624,4.31257693094915,0,0.725362142011344,0,2.05807548828758,0.85960031981627,1.03134418455488,0.404632921719196,0,0,11.5207140903505,6.22506357277798,2.6996991518442,2.96659908770092,0.7104801149461,4.49400165777607,5.37905627450176,0.103689612308478,0,0,0.285650984403804,0.220868540951614,0,0.0958454710182364,0,0,0.127687338085188,0,0,0.0914876436024097,0,0,0.56276261003168,0.15279824777681,0,0.142371680799103,0,0.151452386666368,0.68014404096107,2.6087803983151,1.72084775396277,5.439770669662,1.07940638327563,1.94932925234301,3.13618820968135,0.842666520790511,2.55645483867087,5.71529210126311,3.5333957451034,0,7.69958864485907,5.09610479413291,42.6640021891999,1.08245520505607,1.77351905832569,0.505524445014783,1.25602267690966,0.258937883647172,1.1875371125186,0.346970653532272,0.304465478312141,1.15307748628029,1.05505848386836,1.64624189989987,0.502666365318702,1.97755974187499,0,0,0.161766849947409,0.662524555381181,0,3.72783522436244,1.75668478206928,2.72280718857492,4.59822699375465,0,0,0,0.149790639404823,0,0.125654352112864,0,0,0.20778804455956,0.324482526135515,0.407357455401265,0.497627882440372,1.0108910337347,0.420883711772948,0.780722657776222,1.60931473103431,1.26043490863744,0.753524089178575,0.748401490664606,0.384341160854549,0.187403449119458,1.03481348295606,0.646703978798527,0.189106080167819,0.175951124163949,0.876782929710299,1.66828349535359,1.39300866608867,1.85203922767149,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0.36012412292203,0.23674473558521,0,0.771335564436891,0.232533944750408,0.268273401399619,0.467061369468678,0.329119699826961,0.164167464079095,0.243206428637567,0.146199987425332,0,0,0.420579897128254,0.720332286654991,25.1118275067686,5.02456076660734,0,0,0.257734922644187,0.201683524623343,0.444756087689741,0.190225626112559,7.11793592316767,2.47048432086016,2.26201687920243,3.18330355265841,2.9244613067868,5.39291645192533,6.70027954611552,4.38110801159608,1.51734320762465,0.799739588268102,0,0.814605311381257,0.775809948670503,0.49095073923223,1.26473074248515,0.738050739898011,1.41298855057237,1.1105744752962,2.07516838961004,0.166845105716094,0.196558995113203,0.449724224769707,0.202860121388503,0.482354319504834,0,0.287696137450811,1.13494658742525,0.823684239564244,0,1.86070473834252,1.24815069245824,3.03094653536534,2.87035861635059,3.85954817090694,0.369506380333209,0.568474235311454,0.162964976442026,0.169745085775188,0,0.837531287209079,0.238043640886014,0.195133647857799,0.157635144106191,0,0.159454768657487,0.655453258862952,0.172684981865896,0.433947175744535,0,0,0.491764273019036,0,0,0.468846746368813,0.819674726883377,0.504941854408746,1.89304931649754,1.95219372148319,0,0.477937595905104,0.222798674082394,0.566153061577665,2.02405350837447,1.46127928955656,0.790575555893047,0,1.13552068166615,0.534196811001766,0.488660878060728,0.164970122972535,0,0.971122544619926,0.302323556964751,0.188605079755898,0,0,0.516856586336442,0.363533729477506,0,0,0,0,0,1.08036656418786,0.776152102696527,0.214337035031592,0,0.713475270408282,0.658196082408484,0.608929898229199,2.11204537257339,1.48282449604674,0.220528398054962,2.96795255294664,2.9063596805263,1.56813604813205,1.79058516004705,2.79039529566604,6.70405924248657,0.18542530201051,0,0.619160603889667,0.185194527369712,0,0,0.228778173206523,0.169978429993855,0.279902904647316,0.138199973804424,1.90934123603023,0.474503990371703,0.203319467126849,0.324016022465404,0.836353184057875,2.18362563746178,1.61837215661785,1.48776220305605,1.57053565190418,1.42576470620972,0,0,0,0.496375471371293,0.583353565032143,0.387479470433193,0.168956125490778,0.234714477291508,0.5208175393758,0,0,0,0.316011120628178,0.405450430580328,0.308132871494482,0.129920822977795,0,0.198681354781265,0.120195449519969,0.295379054349154,0.100966449948148,0,0,0.0974578807397524,0.0962118416403295,0,2.94749498699775,4.66170502085536,2.42227412845584,3.18980771091749,0,0.563047426353546,0.183151624267265,4.93047271881851,0,0,0,0.572895513439397,0,0,0.755393897389701,0,0,0,0,0.830298780673413,1.19707462020309,0.512200817262403,0.729320151204882,0.838452650511929,0.551530525350042,0,0.412070114477788,0,0.758091635291392,0.25347929989024,0,0.655490552289177,0.512201219238954,0.459483751644906,0.952587382566147,0.231768651889711,0.192909220463705,1.23625770240992,0.735994600671987,0,0.177475806159338,0.953744759789284,0.290692833264657,0.0941093804153306,0.338458431566706,1.09756783723664,0.526139422875686,0.54321645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| |||
|short_description=p2@Rhod | |||
}} | |||
Revision as of 17:44, 13 September 2013
| Short description: | p2@Rhod |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Rhod_5end |
| Coexpression cluster: | MCL_coexpression_mm9:3149 |
| Association with transcript: | 34bp_to_ENSMUST00000117462_5end |
| EntrezGene: | Rhod |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 7.19e-10 | 25 |
| endodermal cell | 1.23e-08 | 20 |
| oligodendrocyte precursor cell | 6.31e-08 | 8 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 5.89e-11 | 31 |
| gastrointestinal system | 1.23e-08 | 47 |
| mucosa | 2.96e-08 | 15 |
| endoderm-derived structure | 7.78e-07 | 118 |
| endoderm | 7.78e-07 | 118 |
| presumptive endoderm | 7.78e-07 | 118 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
