FFCP PHASE1:Mm9::chr1:108693186..108693246,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20479|HGNC=|MCL_coexpression_id=3|UniProt=P46467,E9QB03|association_with_transcript=0bp_to_ENSMUST00000112736,ENSMUST00000164686_5end|description=CAGE_peak_1_at_Vps4b_5end|id=chr1:108693186..108693246,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000065!4.27e-09!41;UBERON:0001004!1.53e-08!42;UBERON:0004119!2.87e-08!130;UBERON:0000925!2.87e-08!130;UBERON:0006595!2.87e-08!130;UBERON:0001007!1.38e-07!128;UBERON:0001555!1.38e-07!128;UBERON:0007026!1.38e-07!128;UBERON:0000072!1.38e-07!27;UBERON:0004921!3.30e-07!126;UBERON:0004185!3.30e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000065,4.27e-09,41;UBERON:0004119,7.77e-09,118;UBERON:0000925,7.77e-09,118;UBERON:0006595,7.77e-09,118;UBERON:0001004,1.53e-08,42;UBERON:0001007,4.01e-08,116;UBERON:0001555,4.01e-08,116;UBERON:0007026,4.01e-08,116;UBERON:0004921,9.93e-08,114;UBERON:0000072,1.38e-07,27|phase1_expression=31.5493228796444,45.0178275854776,38.219936108721,25.4069937497737,26.0465779572101,28.7073554969332,19.1562365288331,26.21203465864,38.85768731386,29.7261948428932,25.8539132020513,26.7236732634377,24.4817043801624,25.3519167015092,16.6554880907831,15.9955461237963,6.99561878128147,27.2874773034876,31.2620908621084,25.8877687596798,19.6450000248971,33.0638867498948,34.4783721663395,26.8787270292923,25.0056116363215,34.4539178469012,35.7532456812032,38.78482188346,31.5438876297581,36.7963989449499,29.0466968958449,7.62036808151557,3.69038872550742,0,27.1520522566198,24.4364928676984,20.0085969137122,118.862983129282,90.6348999647608,95.8048451472051,170.587131528994,142.756506356315,109.23982943201,22.2837367816772,17.9437168258541,24.228171285342,6.25913075478431,2.18025156380447,6.81027166476863,6.02732687130279,2.37976916763116,4.31257693094915,33.0531733933741,21.035502118329,32.601098516819,26.2404624756666,19.4842739158355,21.6582278756526,5.86717736492834,3.1739458756322,6.33831403506179,6.43804610931351,4.4464739805557,14.3983954765024,7.9109309005358,14.9200824138681,6.5912024314049,8.4528027170742,16.1755795201225,10.8004750665353,11.567872874326,6.85562362569129,5.07997644188711,11.5141351262057,9.20116521775069,10.1114066527102,13.2139057199266,15.7055425844781,16.1286859919056,7.78129097608144,5.94669683415663,8.85552729946492,11.4465029590566,17.4456409109821,19.0997809721013,12.0797720044204,11.5321061447273,13.6071595452469,26.1255366999485,25.2409010756664,35.073603132903,9.46466264679525,13.599426674155,12.4131734076698,18.8435161059824,17.4730485967961,13.0613310722529,20.2812083867889,14.2882302531578,16.2536204274756,37.7460365001504,39.7812079984385,30.5766287647975,42.6640021891999,37.6694411359513,45.3514159200426,36.9032844860792,23.1793275829692,29.5189187357776,19.5943623565569,17.0015620230813,14.6143429589828,18.4492397804847,24.2663451289722,26.5750478126693,22.9969862133306,25.9554716121093,16.6289260457898,18.5768215909474,21.6767578929528,21.2007857721978,16.0008833534623,26.0948465705371,11.1256702864388,16.9651832518899,21.4583926375217,38.1012095928826,20.9965955847693,30.1156438163163,8.53806644607489,12.3525162761029,13.1937069718508,12.3415267336516,13.0414883238469,12.8828587626927,14.1149898868949,26.7837526926332,23.2641035040874,18.4487613656583,14.0996043443938,20.2987891021818,16.3230494147766,22.687828355474,20.7972648613287,23.7447382038134,20.498195245576,21.4576949241779,12.1590584247337,15.9520314770303,24.016472181313,17.9470146647228,14.2477226077924,21.6876854395966,20.5468778248078,24.8996385053612,26.4715574868596,23.1730351813367,25.7347907114715,35.8046009238447,18.6413195281952,16.1822981386956,20.8871991294777,17.992599904476,15.1508458445501,22.0601971428951,15.3472403535269,17.4377710909752,21.2512923108248,17.2787842409154,18.7150909050169,17.1865876237214,18.1287984407412,13.3925570327541,12.4811969447146,11.7762371195911,16.5676425930648,24.7814087237848,23.5361004330554,16.423195291213,22.9914305141834,21.6497335021117,22.991921807061,21.1259141652627,22.6368495073945,33.6915633696603,20.9167672499494,26.6415321328286,32.8278178867899,27.4899362837959,25.1669434423182,25.9365659849633,32.4600275404619,11.3800740571849,29.1333707154809,29.3040112750009,17.514014194697,24.2440608959532,28.5452786953597,27.9505494089217,23.4700135287567,23.3928104483648,22.9518724894549,11.5616524563988,10.5112416601139,9.04171377520734,11.0182435068578,9.94014594803664,11.3353265083636,12.9859184408524,10.9324532231308,17.5106044917038,15.1008777253445,21.5652309791032,24.5613025461212,21.8426371180192,15.912469310668,19.0161258333227,22.1924019827149,20.1380977281599,18.380666941737,19.066902243717,22.0668611507745,22.7649540839847,28.3085575076669,23.0902331659433,40.9780660501378,23.8029067600348,29.8977331025846,34.7611395673322,25.0710871515079,27.4569121166774,30.5209513606989,46.7452980211744,60.9174365876955,16.7199852826472,22.3508764506833,13.4862495589745,1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| ||
|EntrezGene=20479 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|UniProt=P46467,E9QB03 | |||
|association_with_transcript=0bp_to_ENSMUST00000112736,ENSMUST00000164686_5end | |||
|description=CAGE_peak_1_at_Vps4b_5end | |||
|id=chr1:108693186..108693246,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000065!4.27e-09!41;UBERON:0001004!1.53e-08!42;UBERON:0004119!2.87e-08!130;UBERON:0000925!2.87e-08!130;UBERON:0006595!2.87e-08!130;UBERON:0001007!1.38e-07!128;UBERON:0001555!1.38e-07!128;UBERON:0007026!1.38e-07!128;UBERON:0000072!1.38e-07!27;UBERON:0004921!3.30e-07!126;UBERON:0004185!3.30e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000065,4.27e-09,41;UBERON:0004119,7.77e-09,118;UBERON:0000925,7.77e-09,118;UBERON:0006595,7.77e-09,118;UBERON:0001004,1.53e-08,42;UBERON:0001007,4.01e-08,116;UBERON:0001555,4.01e-08,116;UBERON:0007026,4.01e-08,116;UBERON:0004921,9.93e-08,114;UBERON:0000072,1.38e-07,27 | |||
|phase1_expression=31.5493228796444,45.0178275854776,38.219936108721,25.4069937497737,26.0465779572101,28.7073554969332,19.1562365288331,26.21203465864,38.85768731386,29.7261948428932,25.8539132020513,26.7236732634377,24.4817043801624,25.3519167015092,16.6554880907831,15.9955461237963,6.99561878128147,27.2874773034876,31.2620908621084,25.8877687596798,19.6450000248971,33.0638867498948,34.4783721663395,26.8787270292923,25.0056116363215,34.4539178469012,35.7532456812032,38.78482188346,31.5438876297581,36.7963989449499,29.0466968958449,7.62036808151557,3.69038872550742,0,27.1520522566198,24.4364928676984,20.0085969137122,118.862983129282,90.6348999647608,95.8048451472051,170.587131528994,142.756506356315,109.23982943201,22.2837367816772,17.9437168258541,24.228171285342,6.25913075478431,2.18025156380447,6.81027166476863,6.02732687130279,2.37976916763116,4.31257693094915,33.0531733933741,21.035502118329,32.601098516819,26.2404624756666,19.4842739158355,21.6582278756526,5.86717736492834,3.1739458756322,6.33831403506179,6.43804610931351,4.4464739805557,14.3983954765024,7.9109309005358,14.9200824138681,6.5912024314049,8.4528027170742,16.1755795201225,10.8004750665353,11.567872874326,6.85562362569129,5.07997644188711,11.5141351262057,9.20116521775069,10.1114066527102,13.2139057199266,15.7055425844781,16.1286859919056,7.78129097608144,5.94669683415663,8.85552729946492,11.4465029590566,17.4456409109821,19.0997809721013,12.0797720044204,11.5321061447273,13.6071595452469,26.1255366999485,25.2409010756664,35.073603132903,9.46466264679525,13.599426674155,12.4131734076698,18.8435161059824,17.4730485967961,13.0613310722529,20.2812083867889,14.2882302531578,16.2536204274756,37.7460365001504,39.7812079984385,30.5766287647975,42.6640021891999,37.6694411359513,45.3514159200426,36.9032844860792,23.1793275829692,29.5189187357776,19.5943623565569,17.0015620230813,14.6143429589828,18.4492397804847,24.2663451289722,26.5750478126693,22.9969862133306,25.9554716121093,16.6289260457898,18.5768215909474,21.6767578929528,21.2007857721978,16.0008833534623,26.0948465705371,11.1256702864388,16.9651832518899,21.4583926375217,38.1012095928826,20.9965955847693,30.1156438163163,8.53806644607489,12.3525162761029,13.1937069718508,12.3415267336516,13.0414883238469,12.8828587626927,14.1149898868949,26.7837526926332,23.2641035040874,18.4487613656583,14.0996043443938,20.2987891021818,16.3230494147766,22.687828355474,20.7972648613287,23.7447382038134,20.498195245576,21.4576949241779,12.1590584247337,15.9520314770303,24.016472181313,17.9470146647228,14.2477226077924,21.6876854395966,20.5468778248078,24.8996385053612,26.4715574868596,23.1730351813367,25.7347907114715,35.8046009238447,18.6413195281952,16.1822981386956,20.8871991294777,17.992599904476,15.1508458445501,22.0601971428951,15.3472403535269,17.4377710909752,21.2512923108248,17.2787842409154,18.7150909050169,17.1865876237214,18.1287984407412,13.3925570327541,12.4811969447146,11.7762371195911,16.5676425930648,24.7814087237848,23.5361004330554,16.423195291213,22.9914305141834,21.6497335021117,22.991921807061,21.1259141652627,22.6368495073945,33.6915633696603,20.9167672499494,26.6415321328286,32.8278178867899,27.4899362837959,25.1669434423182,25.9365659849633,32.4600275404619,11.3800740571849,29.1333707154809,29.3040112750009,17.514014194697,24.2440608959532,28.5452786953597,27.9505494089217,23.4700135287567,23.3928104483648,22.9518724894549,11.5616524563988,10.5112416601139,9.04171377520734,11.0182435068578,9.94014594803664,11.3353265083636,12.9859184408524,10.9324532231308,17.5106044917038,15.1008777253445,21.5652309791032,24.5613025461212,21.8426371180192,15.912469310668,19.0161258333227,22.1924019827149,20.1380977281599,18.380666941737,19.066902243717,22.0668611507745,22.7649540839847,28.3085575076669,23.0902331659433,40.9780660501378,23.8029067600348,29.8977331025846,34.7611395673322,25.0710871515079,27.4569121166774,30.5209513606989,46.7452980211744,60.9174365876955,16.7199852826472,22.3508764506833,13.4862495589745,17.5817529888305,25.4099165333847,14.6433137778536,20.8235424814729,23.0358859135017,30.3746990803246,21.5071918157297,23.3938607786514,25.1938112402061,23.8838313988188,20.7501659117031,28.4607200121497,12.2102100240287,20.4393722699907,13.3549202750441,24.59593086239,18.476653772924,18.5843193675948,18.9368896200886,14.511530734308,23.7642400492432,13.2885851796348,18.1386737286917,27.3933990758314,25.4473610634254,25.3113138653152,23.3867200872504,16.8669773719998,15.470331487228,17.3624198934432,20.3469036255381,10.8661294377514,22.076714608254,24.1182717753492,20.155676389034,20.0749805134588,12.4830629136986,33.0887108369832,36.6469482594409,18.3038570385618,24.732937941222,40.0431778205846,34.6196189087615,32.2305328808468,31.1867709515616,30.3140070095045,13.9068976507882,16.7453463181896,24.7664241555867,21.1121761201471,19.4019510714832,17.0867784651281,17.1583629904892,45.8941760983409,48.4232025039857,44.0857916436112,13.3653886522116,18.0311516341247,25.0082944566024,2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| |||
|short_description=p1@Vps4b | |||
}} | |||
Revision as of 18:33, 13 September 2013
| Short description: | p1@Vps4b |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Vps4b_5end |
| Coexpression cluster: | MCL_coexpression_mm9:3 |
| Association with transcript: | 0bp_to_ENSMUST00000112736, ENSMUST00000164686_5end |
| EntrezGene: | Vps4b |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| respiratory tract | 4.27e-09 | 41 |
| endoderm-derived structure | 7.77e-09 | 118 |
| endoderm | 7.77e-09 | 118 |
| presumptive endoderm | 7.77e-09 | 118 |
| respiratory system | 1.53e-08 | 42 |
| digestive system | 4.01e-08 | 116 |
| digestive tract | 4.01e-08 | 116 |
| primitive gut | 4.01e-08 | 116 |
| subdivision of digestive tract | 9.93e-08 | 114 |
| segment of respiratory tract | 1.38e-07 | 27 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
