FFCP PHASE1:Mm9::chr2:26062195..26062206,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=248|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:26062195..26062206,+|id=chr2:26062195..26062206,+|ontology_enrichment_celltype=CL:0000197!1.06e-09!2;CL:0002491!1.06e-09!2;CL:0000098!1.06e-09!2|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000007!6.31e-37!8;UBERON:0003296!6.31e-37!8;UBERON:0010133!6.31e-37!8;UBERON:0001894!2.36e-29!10;UBERON:0006222!2.36e-29!10;UBERON:0003465!1.06e-09!2;UBERON:0008193!1.06e-09!2;UBERON:0000032!1.06e-09!2;UBERON:0005744!1.06e-09!2;UBERON:0008001!1.06e-09!2;UBERON:0007497!1.06e-09!2;UBERON:0009955!1.06e-09!2;UBERON:0003067!1.06e-09!2;UBERON:0002546!1.06e-09!2;UBERON:0007914!1.06e-09!2;UBERON:0003457!1.06e-09!2;UBERON:0004766!1.06e-09!2;UBERON:0005253!1.06e-09!2;UBERON:0002227!1.06e-09!2;UBERON:0001846!1.06e-09!2;UBERON:0003128!1.06e-09!2;UBERON:0002241!1.06e-09!2;UBERON:0002105!1.06e-09!2;UBERON:0001678!1.06e-09!2;UBERON:0003129!1.06e-09!2;UBERON:0001694!1.06e-09!2;UBERON:0004681!1.06e-09!2;UBERON:0001839!1.06e-09!2;UBERON:0001690!1.06e-09!2;UBERON:0001844!1.06e-09!2;UBERON:0001849!1.06e-09!2;UBERON:0002499!1.06e-09!2;UBERON:0005944!1.06e-09!2;UBERON:0001855!1.06e-09!2;UBERON:0001703!1.06e-09!2;UBERON:0003069!1.06e-09!2;UBERON:0003051!1.06e-09!2;UBERON:0004288!1.06e-09!2;UBERON:0004637!1.06e-09!2;UBERON:0004761!1.06e-09!2;UBERON:0010113!1.06e-09!2;UBERON:0003089!1.06e-09!2;UBERON:0009123!1.06e-09!2;UBERON:0009617!1.06e-09!2;UBERON:0005641!1.06e-09!2;UBERON:0000033!1.47e-08!63;UBERON:0003056!6.13e-08!49;UBERON:0001049!1.98e-07!52;UBERON:0005068!1.98e-07!52;UBERON:0006241!1.98e-07!52;UBERON:0007135!1.98e-07!52;UBERON:0002346!2.35e-07!71;UBERON:0003075!2.35e-07!71;UBERON:0007284!2.35e-07!71;UBERON:0002780!9.83e-07!39;UBERON:0001890!9.83e-07!39;UBERON:0006240!9.83e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0000007,3.71e-65,8;UBERON:0003296,3.71e-65,8;UBERON:0010133,3.71e-65,8;UBERON:0001894,2.77e-52,10;UBERON:0006222,2.77e-52,10;UBERON:0002780,7.80e-14,39;UBERON:0001890,7.80e-14,39;UBERON:0006240,7.80e-14,39;UBERON:0003080,1.69e-13,40;UBERON:0002616,8.56e-12,46;UBERON:0000955,1.50e-11,47;UBERON:0006238,1.50e-11,47;UBERON:0003056,4.27e-11,49;UBERON:0001049,1.77e-10,52;UBERON:0005068,1.77e-10,52;UBERON:0006241,1.77e-10,52;UBERON:0007135,1.77e-10,52;UBERON:0000073,4.19e-10,54;UBERON:0002368,3.96e-09,60;UBERON:0002346,1.41e-08,64;UBERON:0003075,1.41e-08,64;UBERON:0007284,1.41e-08,64;UBERON:0002530,1.88e-08,65;UBERON:0000949,1.17e-07,72;UBERON:0010371,1.48e-07,73;UBERON:0001017,1.48e-07,73;UBERON:0001016,2.31e-07,75|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0.142371680799103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180062129805349,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.08527526904546,0.720244376125241,2.71653235943784,2.7863814554107,5.67488747655275,3.0322698992352,1.81003922662333,0.608929898229199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147198920134397,0,0,0,0,0.188218760830661,0.0846146078916765,0,0.526139422875686,0,0,0,0,0,0.154936841185966,0,0,0,0,0,0,0|short_description=p@chr2:26062195..26062206,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=248 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:26062195..26062206,+ | |||
|id=chr2:26062195..26062206,+ | |||
|ontology_enrichment_celltype=CL:0000197!1.06e-09!2;CL:0002491!1.06e-09!2;CL:0000098!1.06e-09!2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000007!6.31e-37!8;UBERON:0003296!6.31e-37!8;UBERON:0010133!6.31e-37!8;UBERON:0001894!2.36e-29!10;UBERON:0006222!2.36e-29!10;UBERON:0003465!1.06e-09!2;UBERON:0008193!1.06e-09!2;UBERON:0000032!1.06e-09!2;UBERON:0005744!1.06e-09!2;UBERON:0008001!1.06e-09!2;UBERON:0007497!1.06e-09!2;UBERON:0009955!1.06e-09!2;UBERON:0003067!1.06e-09!2;UBERON:0002546!1.06e-09!2;UBERON:0007914!1.06e-09!2;UBERON:0003457!1.06e-09!2;UBERON:0004766!1.06e-09!2;UBERON:0005253!1.06e-09!2;UBERON:0002227!1.06e-09!2;UBERON:0001846!1.06e-09!2;UBERON:0003128!1.06e-09!2;UBERON:0002241!1.06e-09!2;UBERON:0002105!1.06e-09!2;UBERON:0001678!1.06e-09!2;UBERON:0003129!1.06e-09!2;UBERON:0001694!1.06e-09!2;UBERON:0004681!1.06e-09!2;UBERON:0001839!1.06e-09!2;UBERON:0001690!1.06e-09!2;UBERON:0001844!1.06e-09!2;UBERON:0001849!1.06e-09!2;UBERON:0002499!1.06e-09!2;UBERON:0005944!1.06e-09!2;UBERON:0001855!1.06e-09!2;UBERON:0001703!1.06e-09!2;UBERON:0003069!1.06e-09!2;UBERON:0003051!1.06e-09!2;UBERON:0004288!1.06e-09!2;UBERON:0004637!1.06e-09!2;UBERON:0004761!1.06e-09!2;UBERON:0010113!1.06e-09!2;UBERON:0003089!1.06e-09!2;UBERON:0009123!1.06e-09!2;UBERON:0009617!1.06e-09!2;UBERON:0005641!1.06e-09!2;UBERON:0000033!1.47e-08!63;UBERON:0003056!6.13e-08!49;UBERON:0001049!1.98e-07!52;UBERON:0005068!1.98e-07!52;UBERON:0006241!1.98e-07!52;UBERON:0007135!1.98e-07!52;UBERON:0002346!2.35e-07!71;UBERON:0003075!2.35e-07!71;UBERON:0007284!2.35e-07!71;UBERON:0002780!9.83e-07!39;UBERON:0001890!9.83e-07!39;UBERON:0006240!9.83e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,3.71e-65,8;UBERON:0003296,3.71e-65,8;UBERON:0010133,3.71e-65,8;UBERON:0001894,2.77e-52,10;UBERON:0006222,2.77e-52,10;UBERON:0002780,7.80e-14,39;UBERON:0001890,7.80e-14,39;UBERON:0006240,7.80e-14,39;UBERON:0003080,1.69e-13,40;UBERON:0002616,8.56e-12,46;UBERON:0000955,1.50e-11,47;UBERON:0006238,1.50e-11,47;UBERON:0003056,4.27e-11,49;UBERON:0001049,1.77e-10,52;UBERON:0005068,1.77e-10,52;UBERON:0006241,1.77e-10,52;UBERON:0007135,1.77e-10,52;UBERON:0000073,4.19e-10,54;UBERON:0002368,3.96e-09,60;UBERON:0002346,1.41e-08,64;UBERON:0003075,1.41e-08,64;UBERON:0007284,1.41e-08,64;UBERON:0002530,1.88e-08,65;UBERON:0000949,1.17e-07,72;UBERON:0010371,1.48e-07,73;UBERON:0001017,1.48e-07,73;UBERON:0001016,2.31e-07,75 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0.142371680799103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180062129805349,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.08527526904546,0.720244376125241,2.71653235943784,2.7863814554107,5.67488747655275,3.0322698992352,1.81003922662333,0.608929898229199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147198920134397,0,0,0,0,0.188218760830661,0.0846146078916765,0,0.526139422875686,0,0,0,0,0,0.154936841185966,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:26062195..26062206,+ | |||
}} |
Revision as of 23:30, 13 September 2013
Short description: | p@chr2:26062195..26062206, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:26062195..26062206, + |
Coexpression cluster: | MCL_coexpression_mm9:248 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pituitary gland | 3.71e-65 | 8 |
gland of diencephalon | 3.71e-65 | 8 |
neuroendocrine gland | 3.71e-65 | 8 |
diencephalon | 2.77e-52 | 10 |
future diencephalon | 2.77e-52 | 10 |
regional part of forebrain | 7.80e-14 | 39 |
forebrain | 7.80e-14 | 39 |
future forebrain | 7.80e-14 | 39 |
anterior neural tube | 1.69e-13 | 40 |
regional part of brain | 8.56e-12 | 46 |
brain | 1.50e-11 | 47 |
future brain | 1.50e-11 | 47 |
pre-chordal neural plate | 4.27e-11 | 49 |
neural tube | 1.77e-10 | 52 |
neural rod | 1.77e-10 | 52 |
future spinal cord | 1.77e-10 | 52 |
neural keel | 1.77e-10 | 52 |
regional part of nervous system | 4.19e-10 | 54 |
endocrine gland | 3.96e-09 | 60 |
neurectoderm | 1.41e-08 | 64 |
neural plate | 1.41e-08 | 64 |
presumptive neural plate | 1.41e-08 | 64 |
gland | 1.88e-08 | 65 |
endocrine system | 1.17e-07 | 72 |
ecto-epithelium | 1.48e-07 | 73 |
central nervous system | 1.48e-07 | 73 |
nervous system | 2.31e-07 | 75 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.