FFCP PHASE1:Mm9::chr6:113574042..113574056,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22346|HGNC=|UniProt=P40338,Q3TTE7|association_with_transcript=27bp_to_NM_009507,uc009dha.1_5end|description=CAGE_peak_3_at_Vhl_5end|id=chr6:113574042..113574056,+|ontology_enrichment_celltype=CL:0000144!6.81e-10!121;CL:0000012!6.81e-10!121;CL:0002371!1.04e-08!118;CL:0000034!2.43e-08!97;CL:0000548!1.71e-07!115;CL:0000004!1.71e-07!115;CL:0000255!1.71e-07!115|ontology_enrichment_celltype_v019_2=CL:0000034,5.46e-10,97;CL:0000723,1.13e-07,91;CL:0000048,1.13e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.05e-09!73;UBERON:0005743!2.05e-09!73;UBERON:0000073!1.30e-08!75;UBERON:0001016!1.30e-08!75;UBERON:0001049!1.29e-07!52;UBERON:0005068!1.29e-07!52;UBERON:0006241!1.29e-07!52;UBERON:0007135!1.29e-07!52;UBERON:0000064!4.20e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.97e-07,73|phase1_expression=0.80074423552397,5.93258192986914,5.45999087267443,3.32710632437513,2.00358291978539,2.85394762250213,2.33612640595526,2.1950964985068,7.32101355188667,8.66038747391376,2.05461561870606,1.43589886191606,2.9104124088305,2.01066925563694,0.333109761815663,0,0,0.630924330716475,0.959801035240171,1.69755860719212,1.53077922271926,0.297872853602656,0.783599367416806,0.799962113967033,1.83527424853736,4.01962374880514,1.7230479846363,3.44753972297422,1.14014051673824,1.26015064879965,0.443461021310609,1.27006134691926,1.23012957516914,0,1.1554064790051,0.831173226792462,1.42918549383658,8.78916424547506,3.906676722619,4.18818995179039,4.70585190424811,8.19654581950135,5.34061388334269,0.251793635951155,0.405507724878058,0.550640256485045,0.782391344348039,1.09012578190223,1.31811709640683,0.972149495371417,0.279972843250725,0,2.68452169692378,2.17608642603403,1.34437519656986,0.771778308107841,0.286533439938757,0,1.01158230429799,2.11596391708813,2.53532561402472,0,0,0.899899717281399,1.97773272513395,2.8419204597844,2.69640099466564,4.2264013585371,0.829516898467821,1.21505344498522,0.630974884054146,2.57085885963423,3.09215957332259,0.489963196859816,1.62937300731002,0.919218786610021,1.10115880999389,1.0214987046815,1.68967186581868,1.45074916503213,1.64677758484337,1.04182674111352,1.67509799400829,1.12552522006336,0.763991238884051,3.24091444021034,2.84743361598206,3.16879057903011,0.302904773332736,0.377857800533928,2.02905142091174,0,1.3599426674155,0.539703191637817,0.649776417447669,0,0.421333260395256,0.340860645156116,0.779358013808606,1.06001872353102,0.563373679106722,1.28326477414318,0,0,1.08245520505607,2.02687892380079,0.505524445014783,0.91347103775248,2.58937883647172,0.593768556259299,0.693941307064543,1.21786191324856,0.461230994512117,0.301445281105245,0.940709657085638,0.251333182659351,2.22475470960936,0.578397427679647,0.884610551949874,0,0.220841518460394,0,0,0.585561594023094,1.04723353406728,1.02182822083437,2.15667224110656,1.79970819298022,1.52484272487678,2.24685959107234,1.83000241127451,0.376963056338593,1.21677024134594,2.04572365864264,1.87009240103604,0.973447578406546,0.407357455401265,0.248813941220186,0.505445516867349,0.420883711772948,0.910843100738926,0.229902104433473,1.80062129805349,0.60281927134286,0.408218994907967,1.0249097622788,0.374806898238915,0.517406741478031,1.07783996466421,0.567318240503458,0.703804496655795,1.7535658594206,1.39023624612799,0.348252166522167,1.02891068203972,1.59227413454795,0.702213187313235,1.54408744268829,2.27330799516474,0.621377317606506,1.64168241986767,0.540186184383045,0.23674473558521,0.983821158737019,0.462801338662135,0.465067889500816,0.536546802799238,0.116765342367169,0.16455984991348,0.492502392237286,0.162137619091711,0.146199987425332,0,0.268412837520744,1.68231958851302,1.02904612379284,0,0.528901133327089,1.06644125267617,0.232236671860439,0.644337306610467,0.80673409849337,0.667134131534611,0.570676878337677,1.42358718463353,0.329397909448022,0,0.397912944082302,0.38992817423824,0,0.216138049874694,1.1948476395262,0.379335801906163,0.685491075658373,0,1.4255592949172,0.387904974335251,0.561086559122548,0.379419222745544,0.295220295959204,0,0.123397163921801,0,0,0,0.224862112384854,0.405720242777006,0.241177159752417,1.01850340712568,0.575392274901621,0.972811360650212,0,0,0,0.312037673114561,0.252578877947112,0,0.482443521363367,1.47802552133284,2.84237117655727,0.651859905768103,0.848725428875941,0.234690248288502,0.837531287209079,1.19021820443007,0.780534591431195,0.630540576424764,0.44292937929755,0.797273843287435,0.491589944147214,0.518054945597687,0.867894351489069,0,2.17562273527484,0.983528546038072,0,0.963303539926752,1.17211686592203,0.983609672260053,0.252470927204373,1.26203287766503,0.390438744296638,1.72338718186239,0.716906393857656,0.891194696329576,0.566153061577665,2.02405350837447,2.04579100537918,1.58115111178609,1.60660658210904,0.709700426041343,0.178065603667255,0,1.31976098378028,0,0.728341908464944,1.51161778482376,0.377210159511796,0.590603785761546,0.614870295887855,1.29214146584111,0.727067458955011,0,0,0,0,1.7021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| ||
|EntrezGene=22346 | |||
|HGNC= | |||
|UniProt=P40338,Q3TTE7 | |||
|association_with_transcript=27bp_to_NM_009507,uc009dha.1_5end | |||
|description=CAGE_peak_3_at_Vhl_5end | |||
|id=chr6:113574042..113574056,+ | |||
|ontology_enrichment_celltype=CL:0000144!6.81e-10!121;CL:0000012!6.81e-10!121;CL:0002371!1.04e-08!118;CL:0000034!2.43e-08!97;CL:0000548!1.71e-07!115;CL:0000004!1.71e-07!115;CL:0000255!1.71e-07!115 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,5.46e-10,97;CL:0000723,1.13e-07,91;CL:0000048,1.13e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.05e-09!73;UBERON:0005743!2.05e-09!73;UBERON:0000073!1.30e-08!75;UBERON:0001016!1.30e-08!75;UBERON:0001049!1.29e-07!52;UBERON:0005068!1.29e-07!52;UBERON:0006241!1.29e-07!52;UBERON:0007135!1.29e-07!52;UBERON:0000064!4.20e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.97e-07,73 | |||
|phase1_expression=0.80074423552397,5.93258192986914,5.45999087267443,3.32710632437513,2.00358291978539,2.85394762250213,2.33612640595526,2.1950964985068,7.32101355188667,8.66038747391376,2.05461561870606,1.43589886191606,2.9104124088305,2.01066925563694,0.333109761815663,0,0,0.630924330716475,0.959801035240171,1.69755860719212,1.53077922271926,0.297872853602656,0.783599367416806,0.799962113967033,1.83527424853736,4.01962374880514,1.7230479846363,3.44753972297422,1.14014051673824,1.26015064879965,0.443461021310609,1.27006134691926,1.23012957516914,0,1.1554064790051,0.831173226792462,1.42918549383658,8.78916424547506,3.906676722619,4.18818995179039,4.70585190424811,8.19654581950135,5.34061388334269,0.251793635951155,0.405507724878058,0.550640256485045,0.782391344348039,1.09012578190223,1.31811709640683,0.972149495371417,0.279972843250725,0,2.68452169692378,2.17608642603403,1.34437519656986,0.771778308107841,0.286533439938757,0,1.01158230429799,2.11596391708813,2.53532561402472,0,0,0.899899717281399,1.97773272513395,2.8419204597844,2.69640099466564,4.2264013585371,0.829516898467821,1.21505344498522,0.630974884054146,2.57085885963423,3.09215957332259,0.489963196859816,1.62937300731002,0.919218786610021,1.10115880999389,1.0214987046815,1.68967186581868,1.45074916503213,1.64677758484337,1.04182674111352,1.67509799400829,1.12552522006336,0.763991238884051,3.24091444021034,2.84743361598206,3.16879057903011,0.302904773332736,0.377857800533928,2.02905142091174,0,1.3599426674155,0.539703191637817,0.649776417447669,0,0.421333260395256,0.340860645156116,0.779358013808606,1.06001872353102,0.563373679106722,1.28326477414318,0,0,1.08245520505607,2.02687892380079,0.505524445014783,0.91347103775248,2.58937883647172,0.593768556259299,0.693941307064543,1.21786191324856,0.461230994512117,0.301445281105245,0.940709657085638,0.251333182659351,2.22475470960936,0.578397427679647,0.884610551949874,0,0.220841518460394,0,0,0.585561594023094,1.04723353406728,1.02182822083437,2.15667224110656,1.79970819298022,1.52484272487678,2.24685959107234,1.83000241127451,0.376963056338593,1.21677024134594,2.04572365864264,1.87009240103604,0.973447578406546,0.407357455401265,0.248813941220186,0.505445516867349,0.420883711772948,0.910843100738926,0.229902104433473,1.80062129805349,0.60281927134286,0.408218994907967,1.0249097622788,0.374806898238915,0.517406741478031,1.07783996466421,0.567318240503458,0.703804496655795,1.7535658594206,1.39023624612799,0.348252166522167,1.02891068203972,1.59227413454795,0.702213187313235,1.54408744268829,2.27330799516474,0.621377317606506,1.64168241986767,0.540186184383045,0.23674473558521,0.983821158737019,0.462801338662135,0.465067889500816,0.536546802799238,0.116765342367169,0.16455984991348,0.492502392237286,0.162137619091711,0.146199987425332,0,0.268412837520744,1.68231958851302,1.02904612379284,0,0.528901133327089,1.06644125267617,0.232236671860439,0.644337306610467,0.80673409849337,0.667134131534611,0.570676878337677,1.42358718463353,0.329397909448022,0,0.397912944082302,0.38992817423824,0,0.216138049874694,1.1948476395262,0.379335801906163,0.685491075658373,0,1.4255592949172,0.387904974335251,0.561086559122548,0.379419222745544,0.295220295959204,0,0.123397163921801,0,0,0,0.224862112384854,0.405720242777006,0.241177159752417,1.01850340712568,0.575392274901621,0.972811360650212,0,0,0,0.312037673114561,0.252578877947112,0,0.482443521363367,1.47802552133284,2.84237117655727,0.651859905768103,0.848725428875941,0.234690248288502,0.837531287209079,1.19021820443007,0.780534591431195,0.630540576424764,0.44292937929755,0.797273843287435,0.491589944147214,0.518054945597687,0.867894351489069,0,2.17562273527484,0.983528546038072,0,0.963303539926752,1.17211686592203,0.983609672260053,0.252470927204373,1.26203287766503,0.390438744296638,1.72338718186239,0.716906393857656,0.891194696329576,0.566153061577665,2.02405350837447,2.04579100537918,1.58115111178609,1.60660658210904,0.709700426041343,0.178065603667255,0,1.31976098378028,0,0.728341908464944,1.51161778482376,0.377210159511796,0.590603785761546,0.614870295887855,1.29214146584111,0.727067458955011,0,0,0,0,1.70219802876894,1.8006109403131,1.29358683782755,0.857348140126369,0.886701168211368,0.356737635204141,0.987294123612726,0.913394847343798,1.17335854031855,6.14313005505079,0,0.65954501176592,0.161464426695906,0.361877549568935,0.119372344003136,0.164140899745061,0.874442509889552,2.59595422814714,0.683483523191411,0.412773735926445,0.370389054739423,0.565105371014073,0.546776910884101,0.457556346413045,2.88963330989554,2.37917468950219,3.59319931891502,0,1.58167996790568,1.01659733563424,1.08005340821801,0.627264888043406,0.436725127492355,0,0.743881101528023,0.785267825952089,0.388844919875379,0.621339313086926,15.2197093444731,0.897099276263873,0.827292452285488,0.583353565032143,0.774958940866387,0.844780627453891,1.17357238645754,1.95306577265925,2.72634295506848,2.17425708743405,5.76060012515731,1.58005560314089,1.01362607645082,0.718976700153791,1.16928740680016,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| |||
|short_description=p3@Vhl | |||
}} | |||
Revision as of 08:33, 14 September 2013
| Short description: | p3@Vhl |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_Vhl_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 27bp_to_NM_009507, uc009dha.1_5end |
| EntrezGene: | Vhl |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| stem cell | 5.46e-10 | 97 |
| somatic stem cell | 1.13e-07 | 91 |
| multi fate stem cell | 1.13e-07 | 91 |
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 2.97e-07 | 73 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
