FFCP PHASE1:Mm9::chr7:148629888..148629915,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=57913|HGNC=|MCL_coexpression_id=49|UniProt=|association_with_transcript=0bp_to_ENSMUST00000130878,ENSMUST00000131980,ENSMUST00000147268,uc009kle.1,uc012fxc.1_5end|description=CAGE_peak_1_at_Lrdd_5end|id=chr7:148629888..148629915,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!4.33e-07!45;UBERON:0003061!4.33e-07!45;UBERON:0002193!4.87e-07!48;UBERON:0002405!9.93e-07!70|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.00e-07,45;UBERON:0003061,3.00e-07,45;UBERON:0002193,3.40e-07,48;UBERON:0002405,3.40e-07,48|phase1_expression=0.80074423552397,1.04692622291808,0.454999239389536,1.20985684522732,2.00358291978539,3.52546471014969,1.63528848416868,1.67860320474049,0.985521055061667,0.70219357896598,2.91070545983358,2.47293692885543,1.88320802924326,1.39872643870396,10.6595123781012,13.1608923803387,26.5833513688696,3.78554598429885,2.19383093769182,3.39511721438424,1.7008658030214,7.34753038886551,10.9703911438353,3.67982572424835,1.14704640533585,1.14846392823004,0.86152399231815,1.72376986148711,1.52018735565099,1.51218077855958,0.665191531965914,22.8611042445467,27.0628506537211,0,5.19932915552294,5.15327400611326,6.53341940039581,1.25559489221072,2.3440060335714,2.61761871986899,1.17646297606203,2.73218193983378,0.971020706062307,1.38486499773135,2.73717714292689,1.28482726513177,2.34717403304412,1.30815093828268,0.439372365468944,0.972149495371417,1.25987779462826,2.87505128729943,2.85230430298152,1.45072428402269,5.04140698713696,0.771778308107841,0.573066879877513,3.09403255366465,1.41621522601718,1.05798195854407,1.90149421051854,4.74382344896785,0.889294796111139,4.04954872776629,0,2.1314403448383,5.39280198933128,5.76327457982332,3.11068836925433,4.3201900266141,2.52389953621658,0.285650984403804,0.883474163806454,2.08234358665422,4.50473713785711,5.51531271966013,1.10115880999389,0.383062014255563,0,0.923204014111357,0.823388792421687,2.08365348222704,0.279182999001381,0.56276261003168,0.61119299110724,1.17851434189467,0.996601765593721,1.1183966749518,1.28734528666413,3.02286240427142,0.579728977403356,0.860423876981386,0,1.61910957491345,1.94932925234301,0.896053774194671,2.10666630197628,1.87473354835864,1.81850203222008,1.41335829804136,0.845060518660083,0,5.09610479413291,0,2.16491041011214,1.52015919285059,2.02209778005913,1.02765491747154,7.50919862576798,0.593768556259299,6.7659277438793,3.04465478312141,3.22861696158482,2.26083960828934,1.88141931417128,1.38233250462643,0.988779870937496,1.44599356919912,15.0383793831479,3.72063754879041,8.61281921995535,10.6672555689749,0,0,1.25668024088073,3.0654846625031,4.91242010474273,5.99902730993408,3.55796635804581,0.748953197024114,0.457500602818626,1.50785222535437,0.695297280769106,0.511430914660661,0.20778804455956,0.973447578406546,3.25885964321012,5.84712761867437,1.26361379216837,0.420883711772948,6.37590170517248,6.66716102857071,4.68161537493908,5.42537344208574,7.00775941258677,5.25266253167884,4.59138450342671,0.776110112217047,8.40715172438085,8.88798576788751,6.68614271823006,5.2606975782618,3.33656699070717,4.87553033131033,4.11564272815887,5.37392520409932,4.91549231119264,5.1469581422943,4.26245249093389,8.07790512888457,5.62862543954631,3.96136535214233,5.91861838963026,3.54175617145327,4.01094493507183,3.0229412817553,4.82892122519315,0.934122738937356,3.78487654801005,1.80584210487005,1.05389452409612,0.584799949701329,1.09775057645525,0.805238512562231,0.210289948564127,0.92614151141356,2.97376904685418,2.90895623329899,6.18535926552179,3.48355007790658,6.05677068213839,5.64713868945359,2.44615848229357,2.85338439168839,1.89811624617805,1.81168850196412,1.25667604400135,2.18852119245266,2.9244613067868,2.69645822596266,2.37751854862164,2.19055400579804,5.50036912763937,4.91268604221834,5.63538678365402,4.07302655690629,3.29719228184964,2.24434623649019,2.59269802209455,1.62371162777562,1.255989822731,1.48076596706161,2.37162101669719,19.3540322630669,18.0834275504147,19.7878658898671,18.0545508035768,13.9882752656402,9.16653066413111,10.3570609482292,5.67473293712624,4.94210543738547,2.87536413054709,4.83783231969054,2.49630138491648,1.26289438973556,1.97337154874103,0.482443521363367,1.66277871149944,7.39016505904891,7.00749398700711,3.73439188705414,4.92849521405854,5.52770649557992,1.19021820443007,0.780534591431195,2.67979744980525,2.87904096543407,2.07291199254733,1.14704320301017,2.24490476425664,1.3018415272336,1.50791283939272,1.63171705145613,0.983528546038072,1.37968373152366,1.12385412991454,0.703270119553219,0.327869890753351,0.504941854408746,7.57219726599016,5.85658116444958,7.75524231838076,12.9043150894378,7.5751549188014,6.22768367735431,10.5250782435473,11.1057226006299,7.51046778098395,0.321321316421807,3.40656204499845,3.5613120733451,4.39794790254655,1.64970122972535,1.32745138339963,4.85561272309963,5.44182402536552,2.07465587731488,2.36241514304618,4.30409207121498,1.55056975900933,3.99887102425256,2.13898427030833,1.58018378967908,1.05418608574999,2.06271086496374,1.02131881726136,5.58189391497062,3.62204314591713,2.57204442037911,2.48276327099183,1.42695054081656,2.96188237083818,1.2178597964584,2.3467170806371,1.27099242518292,0,3.62749756471256,2.42196640043858,4.28221766989907,3.10368094408155,4.43180429311665,2.62332752966866,0.556275906031529,13.1570578214347,5.36605856704379,10.5560880600736,18.8368457004691,23.5114071680163,15.7856939512501,2.88963330989554,4.75834937900437,4.83699908315483,1.90934123603023,9.80641580101519,6.70954241518601,4.53622431451565,1.88179466413022,3.27543845619266,2.83215127408124,2.14898984885873,0.785267825952089,1.42576470620972,0.621339313086926,0,5.98066184175915,3.47462829959905,4.083474955225,2.58319646955462,3.71703476079712,3.99014611395563,4.9477666240701,3.14578033277133,1.20792060413003,1.15212002503146,12.324433704499,7.29810775044591,8.01145465885653,10.5235866612014,25.7798441761173,17.28527786597,16.4667765842357,13.8828155544103,11.611141744037,15.622395364275,14.8214492151156,10.3305353584138,11.9302683634009,7.71387554398355,1.58711268530648,2.66383144048878,2.69141569828427,3.52557694364565,1.15913756419314,1.12609485270709,1.64836461840539,1.2862102744744,0,0.564751842617067,0,0.572895513439397,0.171853182343688,0.685082519770642,0,0,0.45032120322422,0,1.03552062350364,5.29315472679301,11.1726964552289,6.82934423016537,8.0225216632537,5.03071590307158,2.75765262675021,2.44471400581777,3.5025959730612,3.53011130550997,3.28506375292937,3.8021894983536,3.01802146217722,3.83930180626518,3.90553429669703,5.22662767496081,2.85776214769844,3.59241410429052,3.6652751888104,4.94503080963968,4.26876868389752,5.14303878578123,2.30718548007139,3.33810665926249,3.92435324907287,4.6113596403512,3.29996970777538,3.84148743032822,4.73525480588117,4.34573164306758,4.48913817326191,3.91495559809775,3.44765688314472,5.72923460437565,3.87342102964915,4.43685205256625,3.99696924700713,5.6143586026898,3.65280791882107,2.86932498103265,4.63241980150983,3.70988536992674|short_description=p1@Lrdd}} | ||
|EntrezGene=57913 | |||
|HGNC= | |||
|MCL_coexpression_id=49 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000130878,ENSMUST00000131980,ENSMUST00000147268,uc009kle.1,uc012fxc.1_5end | |||
|description=CAGE_peak_1_at_Lrdd_5end | |||
|id=chr7:148629888..148629915,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.33e-07!45;UBERON:0003061!4.33e-07!45;UBERON:0002193!4.87e-07!48;UBERON:0002405!9.93e-07!70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.00e-07,45;UBERON:0003061,3.00e-07,45;UBERON:0002193,3.40e-07,48;UBERON:0002405,3.40e-07,48 | |||
|phase1_expression=0.80074423552397,1.04692622291808,0.454999239389536,1.20985684522732,2.00358291978539,3.52546471014969,1.63528848416868,1.67860320474049,0.985521055061667,0.70219357896598,2.91070545983358,2.47293692885543,1.88320802924326,1.39872643870396,10.6595123781012,13.1608923803387,26.5833513688696,3.78554598429885,2.19383093769182,3.39511721438424,1.7008658030214,7.34753038886551,10.9703911438353,3.67982572424835,1.14704640533585,1.14846392823004,0.86152399231815,1.72376986148711,1.52018735565099,1.51218077855958,0.665191531965914,22.8611042445467,27.0628506537211,0,5.19932915552294,5.15327400611326,6.53341940039581,1.25559489221072,2.3440060335714,2.61761871986899,1.17646297606203,2.73218193983378,0.971020706062307,1.38486499773135,2.73717714292689,1.28482726513177,2.34717403304412,1.30815093828268,0.439372365468944,0.972149495371417,1.25987779462826,2.87505128729943,2.85230430298152,1.45072428402269,5.04140698713696,0.771778308107841,0.573066879877513,3.09403255366465,1.41621522601718,1.05798195854407,1.90149421051854,4.74382344896785,0.889294796111139,4.04954872776629,0,2.1314403448383,5.39280198933128,5.76327457982332,3.11068836925433,4.3201900266141,2.52389953621658,0.285650984403804,0.883474163806454,2.08234358665422,4.50473713785711,5.51531271966013,1.10115880999389,0.383062014255563,0,0.923204014111357,0.823388792421687,2.08365348222704,0.279182999001381,0.56276261003168,0.61119299110724,1.17851434189467,0.996601765593721,1.1183966749518,1.28734528666413,3.02286240427142,0.579728977403356,0.860423876981386,0,1.61910957491345,1.94932925234301,0.896053774194671,2.10666630197628,1.87473354835864,1.81850203222008,1.41335829804136,0.845060518660083,0,5.09610479413291,0,2.16491041011214,1.52015919285059,2.02209778005913,1.02765491747154,7.50919862576798,0.593768556259299,6.7659277438793,3.04465478312141,3.22861696158482,2.26083960828934,1.88141931417128,1.38233250462643,0.988779870937496,1.44599356919912,15.0383793831479,3.72063754879041,8.61281921995535,10.6672555689749,0,0,1.25668024088073,3.0654846625031,4.91242010474273,5.99902730993408,3.55796635804581,0.748953197024114,0.457500602818626,1.50785222535437,0.695297280769106,0.511430914660661,0.20778804455956,0.973447578406546,3.25885964321012,5.84712761867437,1.26361379216837,0.420883711772948,6.37590170517248,6.66716102857071,4.68161537493908,5.42537344208574,7.00775941258677,5.25266253167884,4.59138450342671,0.776110112217047,8.40715172438085,8.88798576788751,6.68614271823006,5.2606975782618,3.33656699070717,4.87553033131033,4.11564272815887,5.37392520409932,4.91549231119264,5.1469581422943,4.26245249093389,8.07790512888457,5.62862543954631,3.96136535214233,5.91861838963026,3.54175617145327,4.01094493507183,3.0229412817553,4.82892122519315,0.934122738937356,3.78487654801005,1.80584210487005,1.05389452409612,0.584799949701329,1.09775057645525,0.805238512562231,0.210289948564127,0.92614151141356,2.97376904685418,2.90895623329899,6.18535926552179,3.48355007790658,6.05677068213839,5.64713868945359,2.44615848229357,2.85338439168839,1.89811624617805,1.81168850196412,1.25667604400135,2.18852119245266,2.9244613067868,2.69645822596266,2.37751854862164,2.19055400579804,5.50036912763937,4.91268604221834,5.63538678365402,4.07302655690629,3.29719228184964,2.24434623649019,2.59269802209455,1.62371162777562,1.255989822731,1.48076596706161,2.37162101669719,19.3540322630669,18.0834275504147,19.7878658898671,18.0545508035768,13.9882752656402,9.16653066413111,10.3570609482292,5.67473293712624,4.94210543738547,2.87536413054709,4.83783231969054,2.49630138491648,1.26289438973556,1.97337154874103,0.482443521363367,1.66277871149944,7.39016505904891,7.00749398700711,3.73439188705414,4.92849521405854,5.52770649557992,1.19021820443007,0.780534591431195,2.67979744980525,2.87904096543407,2.07291199254733,1.14704320301017,2.24490476425664,1.3018415272336,1.50791283939272,1.63171705145613,0.983528546038072,1.37968373152366,1.12385412991454,0.703270119553219,0.327869890753351,0.504941854408746,7.57219726599016,5.85658116444958,7.75524231838076,12.9043150894378,7.5751549188014,6.22768367735431,10.5250782435473,11.1057226006299,7.51046778098395,0.321321316421807,3.40656204499845,3.5613120733451,4.39794790254655,1.64970122972535,1.32745138339963,4.85561272309963,5.44182402536552,2.07465587731488,2.36241514304618,4.30409207121498,1.55056975900933,3.99887102425256,2.13898427030833,1.58018378967908,1.05418608574999,2.06271086496374,1.02131881726136,5.58189391497062,3.62204314591713,2.57204442037911,2.48276327099183,1.42695054081656,2.96188237083818,1.2178597964584,2.3467170806371,1.27099242518292,0,3.62749756471256,2.42196640043858,4.28221766989907,3.10368094408155,4.43180429311665,2.62332752966866,0.556275906031529,13.1570578214347,5.36605856704379,10.5560880600736,18.8368457004691,23.5114071680163,15.7856939512501,2.88963330989554,4.75834937900437,4.83699908315483,1.90934123603023,9.80641580101519,6.70954241518601,4.53622431451565,1.88179466413022,3.27543845619266,2.83215127408124,2.14898984885873,0.785267825952089,1.42576470620972,0.621339313086926,0,5.98066184175915,3.47462829959905,4.083474955225,2.58319646955462,3.71703476079712,3.99014611395563,4.9477666240701,3.14578033277133,1.20792060413003,1.15212002503146,12.324433704499,7.29810775044591,8.01145465885653,10.5235866612014,25.7798441761173,17.28527786597,16.4667765842357,13.8828155544103,11.611141744037,15.622395364275,14.8214492151156,10.3305353584138,11.9302683634009,7.71387554398355,1.58711268530648,2.66383144048878,2.69141569828427,3.52557694364565,1.15913756419314,1.12609485270709,1.64836461840539,1.2862102744744,0,0.564751842617067,0,0.572895513439397,0.171853182343688,0.685082519770642,0,0,0.45032120322422,0,1.03552062350364,5.29315472679301,11.1726964552289,6.82934423016537,8.0225216632537,5.03071590307158,2.75765262675021,2.44471400581777,3.5025959730612,3.53011130550997,3.28506375292937,3.8021894983536,3.01802146217722,3.83930180626518,3.90553429669703,5.22662767496081,2.85776214769844,3.59241410429052,3.6652751888104,4.94503080963968,4.26876868389752,5.14303878578123,2.30718548007139,3.33810665926249,3.92435324907287,4.6113596403512,3.29996970777538,3.84148743032822,4.73525480588117,4.34573164306758,4.48913817326191,3.91495559809775,3.44765688314472,5.72923460437565,3.87342102964915,4.43685205256625,3.99696924700713,5.6143586026898,3.65280791882107,2.86932498103265,4.63241980150983,3.70988536992674 | |||
|short_description=p1@Lrdd | |||
}} | |||
Revision as of 12:19, 14 September 2013
| Short description: | p1@Lrdd |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Lrdd_5end |
| Coexpression cluster: | MCL_coexpression_mm9:49 |
| Association with transcript: | 0bp_to_ENSMUST00000130878, ENSMUST00000131980, ENSMUST00000147268, uc009kle.1, uc012fxc.1_5end |
| EntrezGene: | Lrdd |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 3.00e-07 | 45 |
| blood island | 3.00e-07 | 45 |
| hemolymphoid system | 3.40e-07 | 48 |
| immune system | 3.40e-07 | 48 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
