FFCP PHASE1:Mm9::chr7:19851891..19851932,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=395|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:19851891..19851932,-|id=chr7:19851891..19851932,-|ontology_enrichment_celltype=CL:0002563!1.90e-09!9;CL:0002251!1.90e-09!9|ontology_enrichment_celltype_v019_2=CL:0002563,2.75e-18,9;CL:0002251,2.75e-18,9;CL:0000239,4.43e-12,6;CL:0000677,4.43e-12,6;CL:0000584,4.43e-12,6;CL:0000075,3.00e-10,7;CL:0002076,3.09e-10,15;CL:0000066,4.46e-10,25;CL:0002250,8.24e-08,3;CL:0000682,2.85e-07,3;CL:0000223,3.10e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!7.05e-25!59;UBERON:0000160!4.73e-17!43;UBERON:0000344!2.81e-15!15;UBERON:0001242!2.69e-13!13;UBERON:0000060!2.69e-13!13;UBERON:0001262!2.69e-13!13;UBERON:0004786!2.69e-13!13;UBERON:0004923!2.72e-13!24;UBERON:0001007!1.22e-11!128;UBERON:0001555!1.22e-11!128;UBERON:0007026!1.22e-11!128;UBERON:0004119!3.64e-11!130;UBERON:0000925!3.64e-11!130;UBERON:0006595!3.64e-11!130;UBERON:0004921!1.91e-10!126;UBERON:0004185!1.91e-10!126;UBERON:0003350!1.90e-09!9;UBERON:0004808!1.90e-09!9;UBERON:0001277!1.90e-09!9;UBERON:0000945!4.19e-08!16;UBERON:0010039!4.19e-08!16;UBERON:0000485!3.59e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.91e-49,31;UBERON:0005409,1.85e-48,47;UBERON:0000344,1.07e-30,15;UBERON:0001242,1.79e-26,13;UBERON:0001262,1.79e-26,13;UBERON:0004786,1.79e-26,13;UBERON:0003350,2.75e-18,9;UBERON:0004808,2.75e-18,9;UBERON:0001277,2.75e-18,9;UBERON:0004923,9.92e-18,24;UBERON:0001007,2.03e-17,116;UBERON:0001555,2.03e-17,116;UBERON:0007026,2.03e-17,116;UBERON:0004119,5.57e-17,118;UBERON:0000925,5.57e-17,118;UBERON:0006595,5.57e-17,118;UBERON:0004921,3.47e-15,114;UBERON:0000485,1.26e-14,11;UBERON:0002108,1.31e-09,4;UBERON:0000331,9.12e-08,3;UBERON:0002116,9.12e-08,3;UBERON:0001204,9.12e-08,3;UBERON:0001168,9.12e-08,3|phase1_expression=0,4.88565570695105,4.54999239389536,7.86406949397758,4.00716583957078,9.56911849897772,10.5125688267987,0.258246646883153,0.703943610758334,0.468129052643987,0,0,0,0,1.33243904726265,1.41732687172878,0,0,0,0.42438965179803,0.0850432901510698,0.297872853602656,0,11.0394771727451,15.1410125504332,4.59385571292016,12.9228598847722,10.9890328669803,14.251756459228,15.6258680451157,10.8647950221099,0,1.23012957516914,0,11.554064790051,17.4546377626417,12.6585000882669,0.418531630736908,0,0.523523743973798,0,0,0.485510353031154,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0.216491041011214,0,0,2.74041311325744,0,0,0,0,0,0,0,0,0,0,0,0.485300549842228,0.441683036920787,0,20.5030937339934,0,0,20.1811073614787,0.11981512450592,0,0.127070227073065,0,0,0.125654352112864,0,0,0,0,0,0.248813941220186,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5734010554815,5.81791246659797,0,0,0.902072229254653,1.4117846723634,2.2237804384487,2.85338439168839,13.2868137232463,2.30578536613615,5.7807098024062,3.58121649674071,4.09424582950152,8.98819408654222,15.9942156907274,14.9355954940775,0,0,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0,0.405720242777006,0.482354319504834,0,0.575392274901621,0.162135226775035,0.274561413188081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0.395287777946524,0,0,0,0,0,0,0,0.302323556964751,0,0,0,0.775284879504663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2018292820448,0,0.683483523191411,0,0.370389054739423,0.376736914009382,0.546776910884101,0.228778173206523,0,0.139951452323658,0.138199973804424,5.72802370809068,0,0.203319467126849,1.40406943068342,1.25452977608681,2.40198820120795,1.21377911746339,1.57041565878138,0.785267825952089,10.7580427832188,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0,0,0.100826185136841,0,0.0962118416403295,0,0,0,0,0,0,0,0.36630324853453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367687016900028,0.222246727801615,0,0.64183841918363,0.505394423527595,0.25347929989024,0.188626341386076,0.187283014939765,0.256100609619477,0.17230640686684,0,0.231768651889711,0.38581844092741,0,0.588795680537589,0,0.177475806159338,0.238436189947321,0.436039249896986,0.282328141245992,0.338458431566706,0,0,0.135804113845862,0.561142271657738,0.237270036248348,0.0985044823755635,0,0,0.385813221962283,0,0,0.214871054048298,0,0.220591419119515,0|short_description=p@chr7:19851891..19851932,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=395 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:19851891..19851932,- | |||
|id=chr7:19851891..19851932,- | |||
|ontology_enrichment_celltype=CL:0002563!1.90e-09!9;CL:0002251!1.90e-09!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.75e-18,9;CL:0002251,2.75e-18,9;CL:0000239,4.43e-12,6;CL:0000677,4.43e-12,6;CL:0000584,4.43e-12,6;CL:0000075,3.00e-10,7;CL:0002076,3.09e-10,15;CL:0000066,4.46e-10,25;CL:0002250,8.24e-08,3;CL:0000682,2.85e-07,3;CL:0000223,3.10e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!7.05e-25!59;UBERON:0000160!4.73e-17!43;UBERON:0000344!2.81e-15!15;UBERON:0001242!2.69e-13!13;UBERON:0000060!2.69e-13!13;UBERON:0001262!2.69e-13!13;UBERON:0004786!2.69e-13!13;UBERON:0004923!2.72e-13!24;UBERON:0001007!1.22e-11!128;UBERON:0001555!1.22e-11!128;UBERON:0007026!1.22e-11!128;UBERON:0004119!3.64e-11!130;UBERON:0000925!3.64e-11!130;UBERON:0006595!3.64e-11!130;UBERON:0004921!1.91e-10!126;UBERON:0004185!1.91e-10!126;UBERON:0003350!1.90e-09!9;UBERON:0004808!1.90e-09!9;UBERON:0001277!1.90e-09!9;UBERON:0000945!4.19e-08!16;UBERON:0010039!4.19e-08!16;UBERON:0000485!3.59e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.91e-49,31;UBERON:0005409,1.85e-48,47;UBERON:0000344,1.07e-30,15;UBERON:0001242,1.79e-26,13;UBERON:0001262,1.79e-26,13;UBERON:0004786,1.79e-26,13;UBERON:0003350,2.75e-18,9;UBERON:0004808,2.75e-18,9;UBERON:0001277,2.75e-18,9;UBERON:0004923,9.92e-18,24;UBERON:0001007,2.03e-17,116;UBERON:0001555,2.03e-17,116;UBERON:0007026,2.03e-17,116;UBERON:0004119,5.57e-17,118;UBERON:0000925,5.57e-17,118;UBERON:0006595,5.57e-17,118;UBERON:0004921,3.47e-15,114;UBERON:0000485,1.26e-14,11;UBERON:0002108,1.31e-09,4;UBERON:0000331,9.12e-08,3;UBERON:0002116,9.12e-08,3;UBERON:0001204,9.12e-08,3;UBERON:0001168,9.12e-08,3 | |||
|phase1_expression=0,4.88565570695105,4.54999239389536,7.86406949397758,4.00716583957078,9.56911849897772,10.5125688267987,0.258246646883153,0.703943610758334,0.468129052643987,0,0,0,0,1.33243904726265,1.41732687172878,0,0,0,0.42438965179803,0.0850432901510698,0.297872853602656,0,11.0394771727451,15.1410125504332,4.59385571292016,12.9228598847722,10.9890328669803,14.251756459228,15.6258680451157,10.8647950221099,0,1.23012957516914,0,11.554064790051,17.4546377626417,12.6585000882669,0.418531630736908,0,0.523523743973798,0,0,0.485510353031154,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0.216491041011214,0,0,2.74041311325744,0,0,0,0,0,0,0,0,0,0,0,0.485300549842228,0.441683036920787,0,20.5030937339934,0,0,20.1811073614787,0.11981512450592,0,0.127070227073065,0,0,0.125654352112864,0,0,0,0,0,0.248813941220186,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5734010554815,5.81791246659797,0,0,0.902072229254653,1.4117846723634,2.2237804384487,2.85338439168839,13.2868137232463,2.30578536613615,5.7807098024062,3.58121649674071,4.09424582950152,8.98819408654222,15.9942156907274,14.9355954940775,0,0,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0,0.405720242777006,0.482354319504834,0,0.575392274901621,0.162135226775035,0.274561413188081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0.395287777946524,0,0,0,0,0,0,0,0.302323556964751,0,0,0,0.775284879504663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2018292820448,0,0.683483523191411,0,0.370389054739423,0.376736914009382,0.546776910884101,0.228778173206523,0,0.139951452323658,0.138199973804424,5.72802370809068,0,0.203319467126849,1.40406943068342,1.25452977608681,2.40198820120795,1.21377911746339,1.57041565878138,0.785267825952089,10.7580427832188,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0,0.202725215290164,0.102710957164827,0,0,0,0,0,0,0,0.100826185136841,0,0.0962118416403295,0,0,0,0,0,0,0,0.36630324853453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367687016900028,0.222246727801615,0,0.64183841918363,0.505394423527595,0.25347929989024,0.188626341386076,0.187283014939765,0.256100609619477,0.17230640686684,0,0.231768651889711,0.38581844092741,0,0.588795680537589,0,0.177475806159338,0.238436189947321,0.436039249896986,0.282328141245992,0.338458431566706,0,0,0.135804113845862,0.561142271657738,0.237270036248348,0.0985044823755635,0,0,0.385813221962283,0,0,0.214871054048298,0,0.220591419119515,0 | |||
|short_description=p@chr7:19851891..19851932,- | |||
}} |
Revision as of 12:40, 14 September 2013
Short description: | p@chr7:19851891..19851932, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:19851891..19851932, - |
Coexpression cluster: | MCL_coexpression_mm9:395 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.75e-18 | 9 |
epithelial cell of alimentary canal | 2.75e-18 | 9 |
brush border epithelial cell | 4.43e-12 | 6 |
gut absorptive cell | 4.43e-12 | 6 |
enterocyte | 4.43e-12 | 6 |
columnar/cuboidal epithelial cell | 3.00e-10 | 7 |
endo-epithelial cell | 3.09e-10 | 15 |
epithelial cell | 4.46e-10 | 25 |
intestinal crypt stem cell | 8.24e-08 | 3 |
M cell of gut | 2.85e-07 | 3 |
endodermal cell | 3.10e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.91e-49 | 31 |
gastrointestinal system | 1.85e-48 | 47 |
mucosa | 1.07e-30 | 15 |
intestinal mucosa | 1.79e-26 | 13 |
wall of intestine | 1.79e-26 | 13 |
gastrointestinal system mucosa | 1.79e-26 | 13 |
epithelium of mucosa | 2.75e-18 | 9 |
gastrointestinal system epithelium | 2.75e-18 | 9 |
intestinal epithelium | 2.75e-18 | 9 |
organ component layer | 9.92e-18 | 24 |
digestive system | 2.03e-17 | 116 |
digestive tract | 2.03e-17 | 116 |
primitive gut | 2.03e-17 | 116 |
endoderm-derived structure | 5.57e-17 | 118 |
endoderm | 5.57e-17 | 118 |
presumptive endoderm | 5.57e-17 | 118 |
subdivision of digestive tract | 3.47e-15 | 114 |
simple columnar epithelium | 1.26e-14 | 11 |
small intestine | 1.31e-09 | 4 |
ileal mucosa | 9.12e-08 | 3 |
ileum | 9.12e-08 | 3 |
mucosa of small intestine | 9.12e-08 | 3 |
wall of small intestine | 9.12e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.