FFCP PHASE1:Mm9::chr7:31758459..31758472,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=54135|HGNC=|MCL_coexpression_id=2270|UniProt=Q99KG5|association_with_transcript=10bp_to_ENSMUST00000001279_5end|description=CAGE_peak_4_at_Lsr_5end|id=chr7:31758459..31758472,-|ontology_enrichment_celltype=CL:0000066!4.34e-09!25;CL:0000223!5.16e-07!20|ontology_enrichment_celltype_v019_2=CL:0000066,3.18e-10,25;CL:0000223,5.38e-08,20;CL:0002563,5.57e-07,9;CL:0002251,5.57e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!3.04e-18!43;UBERON:0004119!8.62e-17!130;UBERON:0000925!8.62e-17!130;UBERON:0006595!8.62e-17!130;UBERON:0001007!3.49e-16!128;UBERON:0001555!3.49e-16!128;UBERON:0007026!3.49e-16!128;UBERON:0004921!5.14e-15!126;UBERON:0004185!5.14e-15!126;UBERON:0005409!5.31e-15!59;UBERON:0000466!1.08e-11!79;UBERON:0000344!1.20e-10!15;UBERON:0001242!2.82e-09!13;UBERON:0000060!2.82e-09!13;UBERON:0001262!2.82e-09!13;UBERON:0004786!2.82e-09!13;UBERON:0000464!2.49e-07!57;UBERON:0005156!4.85e-07!26;UBERON:0000990!4.85e-07!26|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.52e-17,31;UBERON:0004119,1.56e-14,118;UBERON:0000925,1.56e-14,118;UBERON:0006595,1.56e-14,118;UBERON:0001007,5.95e-14,116;UBERON:0001555,5.95e-14,116;UBERON:0007026,5.95e-14,116;UBERON:0005409,2.34e-13,47;UBERON:0004921,8.01e-13,114;UBERON:0000344,3.35e-11,15;UBERON:0001242,9.56e-10,13;UBERON:0001262,9.56e-10,13;UBERON:0004786,9.56e-10,13;UBERON:0005156,2.24e-07,26;UBERON:0000990,2.24e-07,26;UBERON:0005177,4.69e-07,79;UBERON:0000485,4.85e-07,11;UBERON:0003350,5.57e-07,9;UBERON:0004808,5.57e-07,9;UBERON:0001277,5.57e-07,9;UBERON:0004923,6.30e-07,24;UBERON:0003133,8.03e-07,24|phase1_expression=3.04282809499109,53.0442619611829,43.2249277420059,22.6848158480123,26.0465779572101,31.7291823913472,26.8654536684855,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0.137114433605739,0,2.97651515528744,0,0,41.4380375034923,44.7348098080982,36.7508457033613,38.3378176581577,43.9561314679214,40.665011763664,30.9997059604715,49.0024428548223,0,0,0,11.8429164098023,11.3039558843775,11.637653306955,0.418531630736908,0.7813353445238,0,0,0,0,0,0,0,1.56478268869608,0,0.219686182734472,0.388859798148567,10.9189408867783,0,0,0.725362142011344,0,0,1.14613375975503,0.515672092277442,0.606949382578793,1.05798195854407,0.633831403506179,1.0165335962074,0.889294796111139,0.449949858640699,0,0,0.599200221036809,0.384218305321555,1.03689612308478,1.89008313664367,0.630974884054146,1.14260393761521,0.441737081903227,0.122490799214954,0.670918297127655,0.919218786610021,0,0.510749352340751,0.153606533256243,1.05509030184155,0.823388792421687,0.52091337055676,0.837548997004143,1.68828783009504,0.763991238884051,0.589257170947335,1.13897344639282,1.3047961207771,0.075726193333184,0,4.34796733052517,14.6272059086836,23.1190253460635,21.0484244738749,18.1937396885347,17.4730485967961,7.02222100658759,0,0,0,5.63373679106722,0,0,0,15.8038459938186,20.2687892380079,23.25412447068,8.22123933977232,0.517875767294343,1.33597925158342,0.520455980298408,1.21786191324856,1.38369298353635,0.753613202763113,2.23418543557839,0.376999773989026,7.91023896749996,1.3013942122792,0,0,0,0,9.31958806090611,0.585561594023094,0.83778682725382,23.2465920239818,0,0,0,1.04853447583376,1.37250180845588,0.251308704225729,1.04294592115366,0,0.41557608911912,0.486723789203273,2.34230536855727,1.11966273549084,5.55990068554084,11.3638602178696,1.69156575851515,0.919608417733892,1.44049703844279,1.80845781402858,0.408218994907967,1.0249097622788,0.937017245597288,3.10444044886819,3.23351989399263,1.13463648100692,2.11141348996739,2.19195732427575,2.50242524303038,3.48252166522167,3.49829631893504,3.78165106955137,0,0.257347907114715,0,0.828503090142008,0.703578179943289,0.900310307305074,1.18372367792605,0.787056926989615,0.925602677324269,0,0.536546802799238,1.05088808130453,0.822799249567402,0.32833492815819,0.162137619091711,1.16959989940266,0.658650345873152,0.939444931322602,1.26173969138476,1.3377599609307,25.1118275067686,21.9493970330742,1.91959425481711,2.55460339046482,4.63922860759536,6.85723983719365,9.56225588532942,9.3210556795154,16.1339880925134,13.0112174231969,11.0587491872119,11.1415624343044,13.8424501854575,19.7740269903929,14.0489732418551,14.9355954940775,4.1726938209678,2.97046132785295,3.38123207019241,2.44381593414377,2.13347735884388,3.22624771495465,3.66771915320692,4.87113488332687,4.39596437955849,4.31890073726302,29.0523574545406,1.83529616287703,1.57247196090562,1.57403478669398,0.811440485554012,2.65294875727659,3.31013607315846,2.5892652370573,1.45921704097532,2.74561413188081,1.43768206527355,3.34926852901653,7.48890415474945,17.4279425783507,13.2754086006215,19.7801843758981,2.58654466233247,2.08440552947533,3.42226450528254,2.54617628662782,3.28566347603903,4.02015017860358,3.09456733151818,2.14647012643579,1.7339865851681,2.43611158613652,0.956728611944923,2.29408640602033,3.28101465545202,1.59113964439663,0,0,4.91764273019036,5.79467167239938,0.642202359951168,0.468846746368813,0,0,0.315508219416257,0,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| ||
|EntrezGene=54135 | |||
|HGNC= | |||
|MCL_coexpression_id=2270 | |||
|UniProt=Q99KG5 | |||
|association_with_transcript=10bp_to_ENSMUST00000001279_5end | |||
|description=CAGE_peak_4_at_Lsr_5end | |||
|id=chr7:31758459..31758472,- | |||
|ontology_enrichment_celltype=CL:0000066!4.34e-09!25;CL:0000223!5.16e-07!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.18e-10,25;CL:0000223,5.38e-08,20;CL:0002563,5.57e-07,9;CL:0002251,5.57e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!3.04e-18!43;UBERON:0004119!8.62e-17!130;UBERON:0000925!8.62e-17!130;UBERON:0006595!8.62e-17!130;UBERON:0001007!3.49e-16!128;UBERON:0001555!3.49e-16!128;UBERON:0007026!3.49e-16!128;UBERON:0004921!5.14e-15!126;UBERON:0004185!5.14e-15!126;UBERON:0005409!5.31e-15!59;UBERON:0000466!1.08e-11!79;UBERON:0000344!1.20e-10!15;UBERON:0001242!2.82e-09!13;UBERON:0000060!2.82e-09!13;UBERON:0001262!2.82e-09!13;UBERON:0004786!2.82e-09!13;UBERON:0000464!2.49e-07!57;UBERON:0005156!4.85e-07!26;UBERON:0000990!4.85e-07!26 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.52e-17,31;UBERON:0004119,1.56e-14,118;UBERON:0000925,1.56e-14,118;UBERON:0006595,1.56e-14,118;UBERON:0001007,5.95e-14,116;UBERON:0001555,5.95e-14,116;UBERON:0007026,5.95e-14,116;UBERON:0005409,2.34e-13,47;UBERON:0004921,8.01e-13,114;UBERON:0000344,3.35e-11,15;UBERON:0001242,9.56e-10,13;UBERON:0001262,9.56e-10,13;UBERON:0004786,9.56e-10,13;UBERON:0005156,2.24e-07,26;UBERON:0000990,2.24e-07,26;UBERON:0005177,4.69e-07,79;UBERON:0000485,4.85e-07,11;UBERON:0003350,5.57e-07,9;UBERON:0004808,5.57e-07,9;UBERON:0001277,5.57e-07,9;UBERON:0004923,6.30e-07,24;UBERON:0003133,8.03e-07,24 | |||
|phase1_expression=3.04282809499109,53.0442619611829,43.2249277420059,22.6848158480123,26.0465779572101,31.7291823913472,26.8654536684855,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0.137114433605739,0,2.97651515528744,0,0,41.4380375034923,44.7348098080982,36.7508457033613,38.3378176581577,43.9561314679214,40.665011763664,30.9997059604715,49.0024428548223,0,0,0,11.8429164098023,11.3039558843775,11.637653306955,0.418531630736908,0.7813353445238,0,0,0,0,0,0,0,1.56478268869608,0,0.219686182734472,0.388859798148567,10.9189408867783,0,0,0.725362142011344,0,0,1.14613375975503,0.515672092277442,0.606949382578793,1.05798195854407,0.633831403506179,1.0165335962074,0.889294796111139,0.449949858640699,0,0,0.599200221036809,0.384218305321555,1.03689612308478,1.89008313664367,0.630974884054146,1.14260393761521,0.441737081903227,0.122490799214954,0.670918297127655,0.919218786610021,0,0.510749352340751,0.153606533256243,1.05509030184155,0.823388792421687,0.52091337055676,0.837548997004143,1.68828783009504,0.763991238884051,0.589257170947335,1.13897344639282,1.3047961207771,0.075726193333184,0,4.34796733052517,14.6272059086836,23.1190253460635,21.0484244738749,18.1937396885347,17.4730485967961,7.02222100658759,0,0,0,5.63373679106722,0,0,0,15.8038459938186,20.2687892380079,23.25412447068,8.22123933977232,0.517875767294343,1.33597925158342,0.520455980298408,1.21786191324856,1.38369298353635,0.753613202763113,2.23418543557839,0.376999773989026,7.91023896749996,1.3013942122792,0,0,0,0,9.31958806090611,0.585561594023094,0.83778682725382,23.2465920239818,0,0,0,1.04853447583376,1.37250180845588,0.251308704225729,1.04294592115366,0,0.41557608911912,0.486723789203273,2.34230536855727,1.11966273549084,5.55990068554084,11.3638602178696,1.69156575851515,0.919608417733892,1.44049703844279,1.80845781402858,0.408218994907967,1.0249097622788,0.937017245597288,3.10444044886819,3.23351989399263,1.13463648100692,2.11141348996739,2.19195732427575,2.50242524303038,3.48252166522167,3.49829631893504,3.78165106955137,0,0.257347907114715,0,0.828503090142008,0.703578179943289,0.900310307305074,1.18372367792605,0.787056926989615,0.925602677324269,0,0.536546802799238,1.05088808130453,0.822799249567402,0.32833492815819,0.162137619091711,1.16959989940266,0.658650345873152,0.939444931322602,1.26173969138476,1.3377599609307,25.1118275067686,21.9493970330742,1.91959425481711,2.55460339046482,4.63922860759536,6.85723983719365,9.56225588532942,9.3210556795154,16.1339880925134,13.0112174231969,11.0587491872119,11.1415624343044,13.8424501854575,19.7740269903929,14.0489732418551,14.9355954940775,4.1726938209678,2.97046132785295,3.38123207019241,2.44381593414377,2.13347735884388,3.22624771495465,3.66771915320692,4.87113488332687,4.39596437955849,4.31890073726302,29.0523574545406,1.83529616287703,1.57247196090562,1.57403478669398,0.811440485554012,2.65294875727659,3.31013607315846,2.5892652370573,1.45921704097532,2.74561413188081,1.43768206527355,3.34926852901653,7.48890415474945,17.4279425783507,13.2754086006215,19.7801843758981,2.58654466233247,2.08440552947533,3.42226450528254,2.54617628662782,3.28566347603903,4.02015017860358,3.09456733151818,2.14647012643579,1.7339865851681,2.43611158613652,0.956728611944923,2.29408640602033,3.28101465545202,1.59113964439663,0,0,4.91764273019036,5.79467167239938,0.642202359951168,0.468846746368813,0,0,0.315508219416257,0,0,0,0,0.283076530788832,0,0,0.395287777946524,0.321321316421807,6.10342366395555,4.80777129901589,3.09485222771795,4.45419332025846,2.65490276679926,7.52619972080442,7.86041248108353,6.78978287121233,7.97315110778086,3.99665692327106,3.87642439752332,3.27180356529755,3.56497378384721,4.42451461110142,2.10837217149998,5.15677716240934,6.80879211507576,3.06103859853227,5.43306471887569,7.71613326113732,7.09360934569094,4.10248280484762,4.93647061806363,5.78483403317739,3.75474732901937,7.20229040936989,7.27743713581374,8.57408515295696,2.9063596805263,5.00597276903694,5.37175548014114,9.19189038572343,17.1973693611612,1.29797711407357,0.170870880797853,2.47664241555867,0.185194527369712,0.188368457004691,0.136694227721025,0,0.679913719975421,0.559805809294632,0.414599921413271,3.81868247206045,3.32152793260192,3.86306987541013,4.32021363287205,3.55450103224597,3.27543845619266,4.5853877770839,2.64491058321075,5.49687478166462,2.07383957266869,8.69875038321696,1.69107881605257,6.13017838780313,5.95650565645551,8.5558522871381,7.62042958518613,5.74450826668646,6.68936260280798,16.5359568751817,16.2531983859852,5.55643477899814,4.89651010638371,0.632022241256357,6.48720688928525,4.10843828659309,3.24802057444488,1.9692936523423,1.39076948346885,0.480781798079875,1.62458479892035,0.504832249740738,0.457240839929999,0.302478555410522,0.779663045918019,0.673482891482306,0.935015217452552,4.53460767230423,7.32553646134413,4.57540668708326,6.37961542183498,2.70465431645067,4.50437941082837,4.39563898241436,7.5028932677673,7.52358156053045,0,0,1.71868654031819,0.515559547031063,0,0,0,0.45032120322422,0,0,0.415149390336707,0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| |||
|short_description=p4@Lsr | |||
}} | |||
Revision as of 13:17, 14 September 2013
| Short description: | p4@Lsr |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Lsr_5end |
| Coexpression cluster: | MCL_coexpression_mm9:2270 |
| Association with transcript: | 10bp_to_ENSMUST00000001279_5end |
| EntrezGene: | Lsr |
| Link to Zenbu: | ZENBU |
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CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 3.18e-10 | 25 |
| endodermal cell | 5.38e-08 | 20 |
| intestinal epithelial cell | 5.57e-07 | 9 |
| epithelial cell of alimentary canal | 5.57e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 3.52e-17 | 31 |
| endoderm-derived structure | 1.56e-14 | 118 |
| endoderm | 1.56e-14 | 118 |
| presumptive endoderm | 1.56e-14 | 118 |
| digestive system | 5.95e-14 | 116 |
| digestive tract | 5.95e-14 | 116 |
| primitive gut | 5.95e-14 | 116 |
| gastrointestinal system | 2.34e-13 | 47 |
| subdivision of digestive tract | 8.01e-13 | 114 |
| mucosa | 3.35e-11 | 15 |
| intestinal mucosa | 9.56e-10 | 13 |
| wall of intestine | 9.56e-10 | 13 |
| gastrointestinal system mucosa | 9.56e-10 | 13 |
| reproductive structure | 2.24e-07 | 26 |
| reproductive system | 2.24e-07 | 26 |
| trunk region element | 4.69e-07 | 79 |
| simple columnar epithelium | 4.85e-07 | 11 |
| epithelium of mucosa | 5.57e-07 | 9 |
| gastrointestinal system epithelium | 5.57e-07 | 9 |
| intestinal epithelium | 5.57e-07 | 9 |
| organ component layer | 6.30e-07 | 24 |
| reproductive organ | 8.03e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
