FFCP PHASE1:Mm9::chr9:46050739..46050748,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=191|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:46050739..46050748,+|id=chr9:46050739..46050748,+|ontology_enrichment_celltype=CL:0000239!1.03e-14!6;CL:0000677!1.03e-14!6;CL:0000212!1.03e-14!6;CL:0000584!1.03e-14!6;CL:0000075!1.70e-12!7;CL:0000066!6.47e-10!25;CL:0002563!1.55e-09!9;CL:0002251!1.55e-09!9;CL:0000473!1.35e-08!3;CL:0000627!1.35e-08!3;CL:0000682!1.35e-08!3|ontology_enrichment_celltype_v019_2=CL:0000239,1.98e-17,6;CL:0000677,1.98e-17,6;CL:0000584,1.98e-17,6;CL:0000075,6.45e-15,7;CL:0000682,1.24e-13,3;CL:0000066,2.05e-12,25;CL:0002563,1.47e-11,9;CL:0002251,1.47e-11,9;CL:0000223,4.57e-07,20;CL:0002076,7.70e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.16e-28!43;UBERON:0000344!3.12e-21!15;UBERON:0005409!6.43e-21!59;UBERON:0001242!8.50e-17!13;UBERON:0000060!8.50e-17!13;UBERON:0001262!8.50e-17!13;UBERON:0004786!8.50e-17!13;UBERON:0004923!2.56e-14!24;UBERON:0001007!6.43e-10!128;UBERON:0001555!6.43e-10!128;UBERON:0007026!6.43e-10!128;UBERON:0004119!1.17e-09!130;UBERON:0000925!1.17e-09!130;UBERON:0006595!1.17e-09!130;UBERON:0003350!1.55e-09!9;UBERON:0004808!1.55e-09!9;UBERON:0001277!1.55e-09!9;UBERON:0004921!3.38e-08!126;UBERON:0004185!3.38e-08!126;UBERON:0000485!1.18e-07!11;UBERON:0000331!2.84e-07!3;UBERON:0002116!2.84e-07!3;UBERON:0001204!2.84e-07!3;UBERON:0001168!2.84e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.24e-26,31;UBERON:0000344,3.65e-21,15;UBERON:0005409,1.07e-16,47;UBERON:0001242,1.01e-14,13;UBERON:0001262,1.01e-14,13;UBERON:0004786,1.01e-14,13;UBERON:0004923,1.00e-12,24;UBERON:0003350,1.47e-11,9;UBERON:0004808,1.47e-11,9;UBERON:0001277,1.47e-11,9;UBERON:0001962,1.03e-09,2;UBERON:0001961,1.03e-09,2;UBERON:0001744,1.03e-09,2;UBERON:0000485,2.03e-09,11;UBERON:0001007,2.41e-08,116;UBERON:0001555,2.41e-08,116;UBERON:0007026,2.41e-08,116;UBERON:0004119,3.78e-08,118;UBERON:0000925,3.78e-08,118;UBERON:0006595,3.78e-08,118;UBERON:0002465,9.78e-07,3|phase1_expression=0,13.9590163055744,18.1999695755814,3.32710632437513,3.50627010962443,0.839396359559449,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.03966660290989,8.71755268055246,12.6331032105304,5.59990595006797,6.24866574789078,0.760093677825496,0.756090389279792,1.99557459589774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.39985666853875,0,0,0.448026887097336,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0.494389935468748,0,0,0,0,0,0,0,0,0.766371165625774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31293148088659,1.58670339998127,0,0,0,0.201683524623343,0.22237804384487,0.570676878337677,2.37264530772256,2.9645811850322,4.02136334080431,2.78539060857611,1.9496408711912,0.898819408654221,2.37751854862164,0.995706366271836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03371317267288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62332752966866,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0.206035057238894,0,0,0,0.188626341386076,0,0.128050304809739,0,0,0,0,0,0,0,0,0,0.145346416632329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr9:46050739..46050748,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=191 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr9:46050739..46050748,+ | |||
|id=chr9:46050739..46050748,+ | |||
|ontology_enrichment_celltype=CL:0000239!1.03e-14!6;CL:0000677!1.03e-14!6;CL:0000212!1.03e-14!6;CL:0000584!1.03e-14!6;CL:0000075!1.70e-12!7;CL:0000066!6.47e-10!25;CL:0002563!1.55e-09!9;CL:0002251!1.55e-09!9;CL:0000473!1.35e-08!3;CL:0000627!1.35e-08!3;CL:0000682!1.35e-08!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.98e-17,6;CL:0000677,1.98e-17,6;CL:0000584,1.98e-17,6;CL:0000075,6.45e-15,7;CL:0000682,1.24e-13,3;CL:0000066,2.05e-12,25;CL:0002563,1.47e-11,9;CL:0002251,1.47e-11,9;CL:0000223,4.57e-07,20;CL:0002076,7.70e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.16e-28!43;UBERON:0000344!3.12e-21!15;UBERON:0005409!6.43e-21!59;UBERON:0001242!8.50e-17!13;UBERON:0000060!8.50e-17!13;UBERON:0001262!8.50e-17!13;UBERON:0004786!8.50e-17!13;UBERON:0004923!2.56e-14!24;UBERON:0001007!6.43e-10!128;UBERON:0001555!6.43e-10!128;UBERON:0007026!6.43e-10!128;UBERON:0004119!1.17e-09!130;UBERON:0000925!1.17e-09!130;UBERON:0006595!1.17e-09!130;UBERON:0003350!1.55e-09!9;UBERON:0004808!1.55e-09!9;UBERON:0001277!1.55e-09!9;UBERON:0004921!3.38e-08!126;UBERON:0004185!3.38e-08!126;UBERON:0000485!1.18e-07!11;UBERON:0000331!2.84e-07!3;UBERON:0002116!2.84e-07!3;UBERON:0001204!2.84e-07!3;UBERON:0001168!2.84e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.24e-26,31;UBERON:0000344,3.65e-21,15;UBERON:0005409,1.07e-16,47;UBERON:0001242,1.01e-14,13;UBERON:0001262,1.01e-14,13;UBERON:0004786,1.01e-14,13;UBERON:0004923,1.00e-12,24;UBERON:0003350,1.47e-11,9;UBERON:0004808,1.47e-11,9;UBERON:0001277,1.47e-11,9;UBERON:0001962,1.03e-09,2;UBERON:0001961,1.03e-09,2;UBERON:0001744,1.03e-09,2;UBERON:0000485,2.03e-09,11;UBERON:0001007,2.41e-08,116;UBERON:0001555,2.41e-08,116;UBERON:0007026,2.41e-08,116;UBERON:0004119,3.78e-08,118;UBERON:0000925,3.78e-08,118;UBERON:0006595,3.78e-08,118;UBERON:0002465,9.78e-07,3 | |||
|phase1_expression=0,13.9590163055744,18.1999695755814,3.32710632437513,3.50627010962443,0.839396359559449,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.03966660290989,8.71755268055246,12.6331032105304,5.59990595006797,6.24866574789078,0.760093677825496,0.756090389279792,1.99557459589774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.39985666853875,0,0,0.448026887097336,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0.494389935468748,0,0,0,0,0,0,0,0,0.766371165625774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31293148088659,1.58670339998127,0,0,0,0.201683524623343,0.22237804384487,0.570676878337677,2.37264530772256,2.9645811850322,4.02136334080431,2.78539060857611,1.9496408711912,0.898819408654221,2.37751854862164,0.995706366271836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03371317267288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62332752966866,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0.206035057238894,0,0,0,0.188626341386076,0,0.128050304809739,0,0,0,0,0,0,0,0,0,0.145346416632329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr9:46050739..46050748,+ | |||
}} |
Revision as of 18:04, 14 September 2013
Short description: | p@chr9:46050739..46050748, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:46050739..46050748, + |
Coexpression cluster: | MCL_coexpression_mm9:191 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.98e-17 | 6 |
gut absorptive cell | 1.98e-17 | 6 |
enterocyte | 1.98e-17 | 6 |
columnar/cuboidal epithelial cell | 6.45e-15 | 7 |
M cell of gut | 1.24e-13 | 3 |
epithelial cell | 2.05e-12 | 25 |
intestinal epithelial cell | 1.47e-11 | 9 |
epithelial cell of alimentary canal | 1.47e-11 | 9 |
endodermal cell | 4.57e-07 | 20 |
endo-epithelial cell | 7.70e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.24e-26 | 31 |
mucosa | 3.65e-21 | 15 |
gastrointestinal system | 1.07e-16 | 47 |
intestinal mucosa | 1.01e-14 | 13 |
wall of intestine | 1.01e-14 | 13 |
gastrointestinal system mucosa | 1.01e-14 | 13 |
organ component layer | 1.00e-12 | 24 |
epithelium of mucosa | 1.47e-11 | 9 |
gastrointestinal system epithelium | 1.47e-11 | 9 |
intestinal epithelium | 1.47e-11 | 9 |
gut-associated lymphoid tissue | 1.03e-09 | 2 |
mucosa-associated lymphoid tissue | 1.03e-09 | 2 |
lymphoid tissue | 1.03e-09 | 2 |
simple columnar epithelium | 2.03e-09 | 11 |
digestive system | 2.41e-08 | 116 |
digestive tract | 2.41e-08 | 116 |
primitive gut | 2.41e-08 | 116 |
endoderm-derived structure | 3.78e-08 | 118 |
endoderm | 3.78e-08 | 118 |
presumptive endoderm | 3.78e-08 | 118 |
lymphoid system | 9.78e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.