FFCP PHASE1:Mm9::chr9:46050983..46050990,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=191|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:46050983..46050990,+|id=chr9:46050983..46050990,+|ontology_enrichment_celltype=CL:0000239!3.07e-14!6;CL:0000677!3.07e-14!6;CL:0000212!3.07e-14!6;CL:0000584!3.07e-14!6;CL:0000075!4.44e-12!7;CL:0002563!3.38e-09!9;CL:0002251!3.38e-09!9;CL:0000066!1.98e-07!25;CL:0000473!2.08e-07!3;CL:0000627!2.08e-07!3;CL:0000682!2.08e-07!3|ontology_enrichment_celltype_v019_2=CL:0000239,2.21e-19,6;CL:0000677,2.21e-19,6;CL:0000584,2.21e-19,6;CL:0000075,1.35e-16,7;CL:0002563,7.12e-13,9;CL:0002251,7.12e-13,9;CL:0000066,2.78e-08,25;CL:0002076,1.22e-07,15;CL:0000682,7.85e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.68e-22!43;UBERON:0000344!7.66e-17!15;UBERON:0005409!2.67e-16!59;UBERON:0001242!4.45e-13!13;UBERON:0000060!4.45e-13!13;UBERON:0001262!4.45e-13!13;UBERON:0004786!4.45e-13!13;UBERON:0004923!1.30e-11!24;UBERON:0003350!3.38e-09!9;UBERON:0004808!3.38e-09!9;UBERON:0001277!3.38e-09!9;UBERON:0001007!9.38e-09!128;UBERON:0001555!9.38e-09!128;UBERON:0007026!9.38e-09!128;UBERON:0004119!1.64e-08!130;UBERON:0000925!1.64e-08!130;UBERON:0006595!1.64e-08!130;UBERON:0000485!2.30e-07!11;UBERON:0004921!2.95e-07!126;UBERON:0004185!2.95e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.54e-30,31;UBERON:0000344,2.86e-23,15;UBERON:0005409,4.88e-19,47;UBERON:0004923,1.65e-17,24;UBERON:0001242,1.69e-16,13;UBERON:0001262,1.69e-16,13;UBERON:0004786,1.69e-16,13;UBERON:0003350,7.12e-13,9;UBERON:0004808,7.12e-13,9;UBERON:0001277,7.12e-13,9;UBERON:0000485,1.69e-10,11;UBERON:0001962,7.03e-10,2;UBERON:0001961,7.03e-10,2;UBERON:0001744,7.03e-10,2;UBERON:0001007,1.71e-08,116;UBERON:0001555,1.71e-08,116;UBERON:0007026,1.71e-08,116;UBERON:0004119,2.66e-08,118;UBERON:0000925,2.66e-08,118;UBERON:0006595,2.66e-08,118;UBERON:0002465,7.34e-07,3|phase1_expression=0,9.07336059862339,10.0099832665698,4.53696316960245,2.50447864973174,0.839396359559449,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0,0,0.261199789138935,1.43993180514066,4.35877634027623,1.72269589234506,0.430761996159075,3.01659725760245,0.190023419456374,0,1.55211357458713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.70792451601561,0,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98251269790279,1.32225283331772,0,0,0,0.201683524623343,0.444756087689741,0.190225626112559,0,3.12928013975621,3.01602250560323,2.98434708061726,1.9496408711912,1.79763881730844,0.864552199498777,1.39398891278057,0,0,0,0,0,0,0,0,0,0,0.296452627087149,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91480836629851,0,0,0,0,0,0,0,0,0,0.138199973804424,0,0,0,0,0,0.218362563746178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147198920134397,0,0,0,0.145346416632329,0.0941093804153306,0,0,0,0,0,0.118635018124174,0.197008964751127,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p@chr9:46050983..46050990,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=191 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr9:46050983..46050990,+ | |||
|id=chr9:46050983..46050990,+ | |||
|ontology_enrichment_celltype=CL:0000239!3.07e-14!6;CL:0000677!3.07e-14!6;CL:0000212!3.07e-14!6;CL:0000584!3.07e-14!6;CL:0000075!4.44e-12!7;CL:0002563!3.38e-09!9;CL:0002251!3.38e-09!9;CL:0000066!1.98e-07!25;CL:0000473!2.08e-07!3;CL:0000627!2.08e-07!3;CL:0000682!2.08e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.21e-19,6;CL:0000677,2.21e-19,6;CL:0000584,2.21e-19,6;CL:0000075,1.35e-16,7;CL:0002563,7.12e-13,9;CL:0002251,7.12e-13,9;CL:0000066,2.78e-08,25;CL:0002076,1.22e-07,15;CL:0000682,7.85e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.68e-22!43;UBERON:0000344!7.66e-17!15;UBERON:0005409!2.67e-16!59;UBERON:0001242!4.45e-13!13;UBERON:0000060!4.45e-13!13;UBERON:0001262!4.45e-13!13;UBERON:0004786!4.45e-13!13;UBERON:0004923!1.30e-11!24;UBERON:0003350!3.38e-09!9;UBERON:0004808!3.38e-09!9;UBERON:0001277!3.38e-09!9;UBERON:0001007!9.38e-09!128;UBERON:0001555!9.38e-09!128;UBERON:0007026!9.38e-09!128;UBERON:0004119!1.64e-08!130;UBERON:0000925!1.64e-08!130;UBERON:0006595!1.64e-08!130;UBERON:0000485!2.30e-07!11;UBERON:0004921!2.95e-07!126;UBERON:0004185!2.95e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.54e-30,31;UBERON:0000344,2.86e-23,15;UBERON:0005409,4.88e-19,47;UBERON:0004923,1.65e-17,24;UBERON:0001242,1.69e-16,13;UBERON:0001262,1.69e-16,13;UBERON:0004786,1.69e-16,13;UBERON:0003350,7.12e-13,9;UBERON:0004808,7.12e-13,9;UBERON:0001277,7.12e-13,9;UBERON:0000485,1.69e-10,11;UBERON:0001962,7.03e-10,2;UBERON:0001961,7.03e-10,2;UBERON:0001744,7.03e-10,2;UBERON:0001007,1.71e-08,116;UBERON:0001555,1.71e-08,116;UBERON:0007026,1.71e-08,116;UBERON:0004119,2.66e-08,118;UBERON:0000925,2.66e-08,118;UBERON:0006595,2.66e-08,118;UBERON:0002465,7.34e-07,3 | |||
|phase1_expression=0,9.07336059862339,10.0099832665698,4.53696316960245,2.50447864973174,0.839396359559449,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,0,0,0.261199789138935,1.43993180514066,4.35877634027623,1.72269589234506,0.430761996159075,3.01659725760245,0.190023419456374,0,1.55211357458713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.70792451601561,0,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98251269790279,1.32225283331772,0,0,0,0.201683524623343,0.444756087689741,0.190225626112559,0,3.12928013975621,3.01602250560323,2.98434708061726,1.9496408711912,1.79763881730844,0.864552199498777,1.39398891278057,0,0,0,0,0,0,0,0,0,0,0.296452627087149,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91480836629851,0,0,0,0,0,0,0,0,0,0.138199973804424,0,0,0,0,0,0.218362563746178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147198920134397,0,0,0,0.145346416632329,0.0941093804153306,0,0,0,0,0,0.118635018124174,0.197008964751127,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr9:46050983..46050990,+ | |||
}} |
Revision as of 18:04, 14 September 2013
Short description: | p@chr9:46050983..46050990, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:46050983..46050990, + |
Coexpression cluster: | MCL_coexpression_mm9:191 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.21e-19 | 6 |
gut absorptive cell | 2.21e-19 | 6 |
enterocyte | 2.21e-19 | 6 |
columnar/cuboidal epithelial cell | 1.35e-16 | 7 |
intestinal epithelial cell | 7.12e-13 | 9 |
epithelial cell of alimentary canal | 7.12e-13 | 9 |
epithelial cell | 2.78e-08 | 25 |
endo-epithelial cell | 1.22e-07 | 15 |
M cell of gut | 7.85e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.54e-30 | 31 |
mucosa | 2.86e-23 | 15 |
gastrointestinal system | 4.88e-19 | 47 |
organ component layer | 1.65e-17 | 24 |
intestinal mucosa | 1.69e-16 | 13 |
wall of intestine | 1.69e-16 | 13 |
gastrointestinal system mucosa | 1.69e-16 | 13 |
epithelium of mucosa | 7.12e-13 | 9 |
gastrointestinal system epithelium | 7.12e-13 | 9 |
intestinal epithelium | 7.12e-13 | 9 |
simple columnar epithelium | 1.69e-10 | 11 |
gut-associated lymphoid tissue | 7.03e-10 | 2 |
mucosa-associated lymphoid tissue | 7.03e-10 | 2 |
lymphoid tissue | 7.03e-10 | 2 |
digestive system | 1.71e-08 | 116 |
digestive tract | 1.71e-08 | 116 |
primitive gut | 1.71e-08 | 116 |
endoderm-derived structure | 2.66e-08 | 118 |
endoderm | 2.66e-08 | 118 |
presumptive endoderm | 2.66e-08 | 118 |
lymphoid system | 7.34e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.