FFCP PHASE1:Mm9::chr9:95685948..95685955,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=126|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:95685948..95685955,-|id=chr9:95685948..95685955,-|ontology_enrichment_celltype=CL:0000239!1.94e-07!6;CL:0000677!1.94e-07!6;CL:0000212!1.94e-07!6;CL:0000584!1.94e-07!6|ontology_enrichment_celltype_v019_2=CL:0000239,3.64e-13,6;CL:0000677,3.64e-13,6;CL:0000584,3.64e-13,6;CL:0000075,2.98e-11,7;CL:0002563,1.07e-08,9;CL:0002251,1.07e-08,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!3.12e-17!43;UBERON:0005409!8.83e-15!59;UBERON:0000344!2.71e-12!15;UBERON:0001007!1.42e-10!128;UBERON:0001555!1.42e-10!128;UBERON:0007026!1.42e-10!128;UBERON:0004119!3.56e-10!130;UBERON:0000925!3.56e-10!130;UBERON:0006595!3.56e-10!130;UBERON:0001242!4.14e-10!13;UBERON:0000060!4.14e-10!13;UBERON:0001262!4.14e-10!13;UBERON:0004786!4.14e-10!13;UBERON:0004921!2.39e-09!126;UBERON:0004185!2.39e-09!126;UBERON:0004923!2.97e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.28e-43,31;UBERON:0005409,1.26e-32,47;UBERON:0000344,1.45e-20,15;UBERON:0001242,3.31e-15,13;UBERON:0001262,3.31e-15,13;UBERON:0004786,3.31e-15,13;UBERON:0001007,3.23e-13,116;UBERON:0001555,3.23e-13,116;UBERON:0007026,3.23e-13,116;UBERON:0004119,6.51e-13,118;UBERON:0000925,6.51e-13,118;UBERON:0006595,6.51e-13,118;UBERON:0004923,3.61e-12,24;UBERON:0004921,7.67e-11,114;UBERON:0003350,1.07e-08,9;UBERON:0004808,1.07e-08,9;UBERON:0001277,1.07e-08,9;UBERON:0002108,2.79e-08,4;UBERON:0001155,6.83e-08,2;UBERON:0000059,6.83e-08,2;UBERON:0001962,7.96e-08,2;UBERON:0001961,7.96e-08,2;UBERON:0001744,7.96e-08,2;UBERON:0000485,4.59e-07,11|phase1_expression=0.160148847104794,2.09385244583617,2.72999543633722,3.93203474698879,2.50447864973174,0.33575854382378,1.16806320297763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,3.83981814704176,3.89995777814189,0.57423196411502,1.7230479846363,1.72376986148711,12.7315691035771,3.52842181663903,0.886922042621219,0,0,0,0,0.498703936075477,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30559649555362,0,0,0,0,0,0,0,0,0.539703191637817,0,0,0.421333260395256,0,0,0,0,0,0,0,0.216491041011214,0.253359865475099,0,0.91347103775248,0,0,0,0,0,0,0,0,0.988779870937496,0,0,0,0,0,3.72783522436244,0,0,4.59822699375465,0,0,0,0,0,0.125654352112864,0.173824320192276,0,0,0,0,0,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,5.28670052774077,2.3800550999719,0,0,0.38660238396628,0.403367049246685,1.11189021922435,0.760902504450237,6.64340686162316,2.63518327558417,2.26201687920243,1.98956472041151,1.55971269695296,4.49409704327111,4.53889904736858,3.78368419183298,0,0,1.1270773567308,0,0,0,0.252946148497029,0.442830443938806,0.156998727841375,0.123397163921801,0,0,0.196558995113203,0.224862112384854,0,0.241177159752417,0.25462585178142,0.287696137450811,0.324270453550071,0.823684239564244,0,0.372140947668503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0.345369963731791,0,0,0,0,0,0,0.234423373184406,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0,0,0,0.162886959353576,0,0,0,0,0.188605079755898,0.295301892880773,0,0,0,0,0,0,0,0,0,0.258717367565509,0.214337035031592,0,0,0,0,0,0,0,0,0,0,0,0,3.49777003955821,0.18542530201051,0,0,0,0,0,0,0,0,0,1.90934123603023,0,0,0,0,0,0.134864346384821,0.247960367176008,0.26175594198403,1.94422459937689,0,0,0,0.165458490457098,0,0,0,0,0,0,0,0,0.316011120628178,0.202725215290164,0.308132871494482,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0.685082519770642,0,0,0,0,0,0,0,0,0.243106717068294,0,0.183843508450014,0.222246727801615,0,0,0,0.25347929989024,0.188626341386076,0,0,0.114870937911227,0,0,0,0,0.441596760403192,0,0.177475806159338,0,0,0,0.0846146078916765,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p@chr9:95685948..95685955,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=126 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr9:95685948..95685955,- | |||
|id=chr9:95685948..95685955,- | |||
|ontology_enrichment_celltype=CL:0000239!1.94e-07!6;CL:0000677!1.94e-07!6;CL:0000212!1.94e-07!6;CL:0000584!1.94e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,3.64e-13,6;CL:0000677,3.64e-13,6;CL:0000584,3.64e-13,6;CL:0000075,2.98e-11,7;CL:0002563,1.07e-08,9;CL:0002251,1.07e-08,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!3.12e-17!43;UBERON:0005409!8.83e-15!59;UBERON:0000344!2.71e-12!15;UBERON:0001007!1.42e-10!128;UBERON:0001555!1.42e-10!128;UBERON:0007026!1.42e-10!128;UBERON:0004119!3.56e-10!130;UBERON:0000925!3.56e-10!130;UBERON:0006595!3.56e-10!130;UBERON:0001242!4.14e-10!13;UBERON:0000060!4.14e-10!13;UBERON:0001262!4.14e-10!13;UBERON:0004786!4.14e-10!13;UBERON:0004921!2.39e-09!126;UBERON:0004185!2.39e-09!126;UBERON:0004923!2.97e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.28e-43,31;UBERON:0005409,1.26e-32,47;UBERON:0000344,1.45e-20,15;UBERON:0001242,3.31e-15,13;UBERON:0001262,3.31e-15,13;UBERON:0004786,3.31e-15,13;UBERON:0001007,3.23e-13,116;UBERON:0001555,3.23e-13,116;UBERON:0007026,3.23e-13,116;UBERON:0004119,6.51e-13,118;UBERON:0000925,6.51e-13,118;UBERON:0006595,6.51e-13,118;UBERON:0004923,3.61e-12,24;UBERON:0004921,7.67e-11,114;UBERON:0003350,1.07e-08,9;UBERON:0004808,1.07e-08,9;UBERON:0001277,1.07e-08,9;UBERON:0002108,2.79e-08,4;UBERON:0001155,6.83e-08,2;UBERON:0000059,6.83e-08,2;UBERON:0001962,7.96e-08,2;UBERON:0001961,7.96e-08,2;UBERON:0001744,7.96e-08,2;UBERON:0000485,4.59e-07,11 | |||
|phase1_expression=0.160148847104794,2.09385244583617,2.72999543633722,3.93203474698879,2.50447864973174,0.33575854382378,1.16806320297763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,3.83981814704176,3.89995777814189,0.57423196411502,1.7230479846363,1.72376986148711,12.7315691035771,3.52842181663903,0.886922042621219,0,0,0,0,0.498703936075477,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30559649555362,0,0,0,0,0,0,0,0,0.539703191637817,0,0,0.421333260395256,0,0,0,0,0,0,0,0.216491041011214,0.253359865475099,0,0.91347103775248,0,0,0,0,0,0,0,0,0.988779870937496,0,0,0,0,0,3.72783522436244,0,0,4.59822699375465,0,0,0,0,0,0.125654352112864,0.173824320192276,0,0,0,0,0,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0,5.28670052774077,2.3800550999719,0,0,0.38660238396628,0.403367049246685,1.11189021922435,0.760902504450237,6.64340686162316,2.63518327558417,2.26201687920243,1.98956472041151,1.55971269695296,4.49409704327111,4.53889904736858,3.78368419183298,0,0,1.1270773567308,0,0,0,0.252946148497029,0.442830443938806,0.156998727841375,0.123397163921801,0,0,0.196558995113203,0.224862112384854,0,0.241177159752417,0.25462585178142,0.287696137450811,0.324270453550071,0.823684239564244,0,0.372140947668503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0.345369963731791,0,0,0,0,0,0,0.234423373184406,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0,0,0,0.162886959353576,0,0,0,0,0.188605079755898,0.295301892880773,0,0,0,0,0,0,0,0,0,0.258717367565509,0.214337035031592,0,0,0,0,0,0,0,0,0,0,0,0,3.49777003955821,0.18542530201051,0,0,0,0,0,0,0,0,0,1.90934123603023,0,0,0,0,0,0.134864346384821,0.247960367176008,0.26175594198403,1.94422459937689,0,0,0,0.165458490457098,0,0,0,0,0,0,0,0,0.316011120628178,0.202725215290164,0.308132871494482,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0.685082519770642,0,0,0,0,0,0,0,0,0.243106717068294,0,0.183843508450014,0.222246727801615,0,0,0,0.25347929989024,0.188626341386076,0,0,0.114870937911227,0,0,0,0,0.441596760403192,0,0.177475806159338,0,0,0,0.0846146078916765,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr9:95685948..95685955,- | |||
}} |
Revision as of 19:01, 14 September 2013
Short description: | p@chr9:95685948..95685955, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:95685948..95685955, - |
Coexpression cluster: | MCL_coexpression_mm9:126 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 3.64e-13 | 6 |
gut absorptive cell | 3.64e-13 | 6 |
enterocyte | 3.64e-13 | 6 |
columnar/cuboidal epithelial cell | 2.98e-11 | 7 |
intestinal epithelial cell | 1.07e-08 | 9 |
epithelial cell of alimentary canal | 1.07e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
intestine | 6.28e-43 | 31 |
gastrointestinal system | 1.26e-32 | 47 |
mucosa | 1.45e-20 | 15 |
intestinal mucosa | 3.31e-15 | 13 |
wall of intestine | 3.31e-15 | 13 |
gastrointestinal system mucosa | 3.31e-15 | 13 |
digestive system | 3.23e-13 | 116 |
digestive tract | 3.23e-13 | 116 |
primitive gut | 3.23e-13 | 116 |
endoderm-derived structure | 6.51e-13 | 118 |
endoderm | 6.51e-13 | 118 |
presumptive endoderm | 6.51e-13 | 118 |
organ component layer | 3.61e-12 | 24 |
subdivision of digestive tract | 7.67e-11 | 114 |
epithelium of mucosa | 1.07e-08 | 9 |
gastrointestinal system epithelium | 1.07e-08 | 9 |
intestinal epithelium | 1.07e-08 | 9 |
small intestine | 2.79e-08 | 4 |
colon | 6.83e-08 | 2 |
large intestine | 6.83e-08 | 2 |
gut-associated lymphoid tissue | 7.96e-08 | 2 |
mucosa-associated lymphoid tissue | 7.96e-08 | 2 |
lymphoid tissue | 7.96e-08 | 2 |
simple columnar epithelium | 4.59e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.