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MCL coexpression mm9:585: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000153!1.19e-08!43;UBERON:0001048!3.78e-07!134
|tfbs_overrepresentation_for_novel_motifs=0.737036,0.409645,0.245304,0.303186,0.1565,0.315748,0.396495,0.0908011,0.320069,1.19227,0.357058,0.385627,0.630954,0.407615,0.504927,0,0.587245,0.150639,0.279039,0.143041,0.616152,0.447169,1.04849,0.155356,0.251585,0.432737,0.561494,0.334131,0.558665,0.438367,0.321757,0.683831,0.455295,0.234079,0.505829,0.612118,1.39042,0.382372,0.79515,0.707364,0.466602,0.326286,0.2117,0.170547,0.953009,0.293566,0.512146,0.919381,0.0642028,0.19345,0.570705,1.15826,0.736781,0.82076,0.837732,1.06445,0.200484,0.977003,0.535132,1.86649,0.664611,1.17701,0.104381,0.560059,1.08652,0.598412,0.970969,1.3158,1.58703,1.17005,1.21364,0.313987,0.473369,2.02139,0.883633,0.0619297,0.0658238,0.50152,0.648171,0.624196,0.316038,0.60374,0.464847,0.61111,0.758319,1.89219,0.237482,0.053731,0.516731,1.47691,1.03946,0.763136,0.696137,0.16091,2.50467,0.11194,0.299765,0.698838,0.512384,0.379245,0.862562,0.683562,0.803823,0.571268,0.57027,1.56637,0.627019,0.911463,1.84928,1.16343,0.261228,0.805555,1.17452,0.361667,1.04639,0.904538,0.479057,0.306448,0.58848,0.139554,0.875675,0.540309,0.434408,0.500675,1.09972,0.651709,1.04215,1.64843,0.969481,0.163147,0.787341,0.804729,0.940498,0.426575,1.06766,0.092963,0.753345,0.327523,1.01927,1.84381,1.44523,2.23633,0.445463,0.693891,0.564145,0.326684,0.515065,1.80426,0.276297,0.477267,0.777047,0.983868,0.822286,0.747142,0.425729,0.901933,0.458393,0.178202,0.265096,0.752802,1.02862,0.757491,0.652135,0.719007,0.561023,0.418964,0.141416,0.384198,0.556474
|tfbs_overrepresentation_jaspar=MA0003.1;0.829197,MA0004.1;0.303605,MA0006.1;0.16569,MA0007.1;0.290695,MA0009.1;0.709264,MA0014.1;0.357292,MA0017.1;0.186015,MA0019.1;0.535691,MA0024.1;0.667197,MA0025.1;0.936082,MA0027.1;2.34178,MA0028.1;0.992869,MA0029.1;0.64639,MA0030.1;0.65267,MA0031.1;0.618697,MA0038.1;1.93577,MA0040.1;0.721328,MA0041.1;0.239557,MA0042.1;1.20982,MA0043.1;0.802848,MA0046.1;0.743934,MA0048.1;0.168666,MA0050.1;2.43431,MA0051.1;1.12244,MA0052.1;0.729105,MA0055.1;0.226387,MA0056.1;0,MA0057.1;0.630087,MA0058.1;0.223242,MA0059.1;0.233271,MA0060.1;0.351437,MA0061.1;0.40468,MA0063.1;0,MA0066.1;0.422624,MA0067.1;1.04514,MA0068.1;1.00777,MA0069.1;1.73105,MA0070.1;1.71166,MA0071.1;0.336739,MA0072.1;0.711905,MA0073.1;0.486225,MA0074.1;0.390075,MA0076.1;1.10234,MA0077.1;0.691048,MA0078.1;0.471303,MA0081.1;0.252371,MA0083.1;0.802078,MA0084.1;1.3693,MA0087.1;0.760279,MA0088.1;1.49046,MA0089.1;0,MA0090.1;0.27428,MA0091.1;0.315003,MA0092.1;1.38104,MA0093.1;0.179936,MA0095.1;0,MA0098.1;0,MA0100.1;0.989129,MA0101.1;0.675688,MA0103.1;0.19444,MA0105.1;0.491577,MA0106.1;1.20346,MA0107.1;0.555009,MA0108.2;0.557195,MA0109.1;0,MA0111.1;0.286331,MA0113.1;0.452439,MA0114.1;0.400482,MA0115.1;0.805567,MA0116.1;0.165534,MA0117.1;0.774259,MA0119.1;0.241106,MA0122.1;0.793507,MA0124.1;0.992825,MA0125.1;0.920215,MA0130.1;0,MA0131.1;2.26454,MA0132.1;0,MA0133.1;0,MA0135.1;0.838263,MA0136.1;0.408073,MA0139.1;0.0883913,MA0140.1;0.379562,MA0141.1;0.210047,MA0142.1;0.604892,MA0143.1;0.467531,MA0144.1;0.129525,MA0145.1;0.793629,MA0146.1;2.3312,MA0147.1;0.138228,MA0148.1;0.317692,MA0149.1;0.245177,MA0062.2;2.39625,MA0035.2;0.383789,MA0039.2;0.168721,MA0138.2;0.523978,MA0002.2;0.302282,MA0137.2;0.207733,MA0104.2;0.326825,MA0047.2;0.431964,MA0112.2;0.494696,MA0065.2;0.4963,MA0150.1;0.290598,MA0151.1;0,MA0152.1;0.432062,MA0153.1;0.854464,MA0154.1;0.16541,MA0155.1;0.0312913,MA0156.1;0.580656,MA0157.1;0.574484,MA0158.1;0,MA0159.1;0.145521,MA0160.1;0.320315,MA0161.1;0,MA0162.1;0.317256,MA0163.1;3.87586,MA0164.1;0.408402,MA0080.2;0.556674,MA0018.2;0.417217,MA0099.2;0.518072,MA0079.2;1.03355,MA0102.2;1.42135,MA0258.1;0.376353,MA0259.1;0.130633,MA0442.1;0
}}

Latest revision as of 15:33, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:116018534..116018563,-p1@Cnot2
Mm9::chr11:107409239..107409273,+p1@Helz
Mm9::chr13:77847944..77848001,+p1@Fam172a
Mm9::chr14:17197685..17197708,+p1@Top2b
Mm9::chr14:31292806..31292871,+p1@Dcp1a
Mm9::chr2:34987714..34987767,+p2@Cep110
Mm9::chr4:83063619..83063662,+p1@Snapc3
Mm9::chr6:11875869..11875941,+p1@Phf14
Mm9::chr9:107775018..107775078,-p1@Rbm6
Mm9::chr9:72122773..72122820,+p1@Zfp280d
Mm9::chr9:95855163..95855202,+p1@Xrn1
Mm9::chr9:95855205..95855219,+p3@Xrn1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
anterior region of body1.19e-0843
primordium3.78e-07134


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.829197
MA0004.10.303605
MA0006.10.16569
MA0007.10.290695
MA0009.10.709264
MA0014.10.357292
MA0017.10.186015
MA0019.10.535691
MA0024.10.667197
MA0025.10.936082
MA0027.12.34178
MA0028.10.992869
MA0029.10.64639
MA0030.10.65267
MA0031.10.618697
MA0038.11.93577
MA0040.10.721328
MA0041.10.239557
MA0042.11.20982
MA0043.10.802848
MA0046.10.743934
MA0048.10.168666
MA0050.12.43431
MA0051.11.12244
MA0052.10.729105
MA0055.10.226387
MA0056.10
MA0057.10.630087
MA0058.10.223242
MA0059.10.233271
MA0060.10.351437
MA0061.10.40468
MA0063.10
MA0066.10.422624
MA0067.11.04514
MA0068.11.00777
MA0069.11.73105
MA0070.11.71166
MA0071.10.336739
MA0072.10.711905
MA0073.10.486225
MA0074.10.390075
MA0076.11.10234
MA0077.10.691048
MA0078.10.471303
MA0081.10.252371
MA0083.10.802078
MA0084.11.3693
MA0087.10.760279
MA0088.11.49046
MA0089.10
MA0090.10.27428
MA0091.10.315003
MA0092.11.38104
MA0093.10.179936
MA0095.10
MA0098.10
MA0100.10.989129
MA0101.10.675688
MA0103.10.19444
MA0105.10.491577
MA0106.11.20346
MA0107.10.555009
MA0108.20.557195
MA0109.10
MA0111.10.286331
MA0113.10.452439
MA0114.10.400482
MA0115.10.805567
MA0116.10.165534
MA0117.10.774259
MA0119.10.241106
MA0122.10.793507
MA0124.10.992825
MA0125.10.920215
MA0130.10
MA0131.12.26454
MA0132.10
MA0133.10
MA0135.10.838263
MA0136.10.408073
MA0139.10.0883913
MA0140.10.379562
MA0141.10.210047
MA0142.10.604892
MA0143.10.467531
MA0144.10.129525
MA0145.10.793629
MA0146.12.3312
MA0147.10.138228
MA0148.10.317692
MA0149.10.245177
MA0062.22.39625
MA0035.20.383789
MA0039.20.168721
MA0138.20.523978
MA0002.20.302282
MA0137.20.207733
MA0104.20.326825
MA0047.20.431964
MA0112.20.494696
MA0065.20.4963
MA0150.10.290598
MA0151.10
MA0152.10.432062
MA0153.10.854464
MA0154.10.16541
MA0155.10.0312913
MA0156.10.580656
MA0157.10.574484
MA0158.10
MA0159.10.145521
MA0160.10.320315
MA0161.10
MA0162.10.317256
MA0163.13.87586
MA0164.10.408402
MA0080.20.556674
MA0018.20.417217
MA0099.20.518072
MA0079.21.03355
MA0102.21.42135
MA0258.10.376353
MA0259.10.130633
MA0442.10
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