FFCP PHASE1:Hg19::chr12:56756553..56756620,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=319 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=615 | |||
|TSSclassifier=weak | |||
|UniProt=Q13790,F5GXS5 | |||
|association_with_transcript=0bp_to_ENST00000398189,ENST00000541105,NM_001638,uc001sle.1_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_1_at_APOF_5end | |||
|id=chr12:56756553..56756620,- | |||
|ontology_enrichment_celltype=CL:0000181!2.25e-24!12;CL:0000417!2.25e-24!12;CL:0000668!2.25e-24!12;CL:0000414!2.25e-24!12;CL:0000412!2.25e-24!12;CL:0000182!2.25e-24!12;CL:0000214!1.77e-11!3 | |||
|ontology_enrichment_celltype_v019=CL:0000182;6.17e-59;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,6.17e-59,12;CL:0000223,3.03e-12,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.46e-44;11!UBERON:0009497;9.07e-38;13!UBERON:0001041;1.58e-16;30!UBERON:0003104;5.79e-16;31!CL:0000223;3.56e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002365!3.79e-30!31;UBERON:0002330!3.79e-30!31;UBERON:0002107!8.44e-27!19;UBERON:0006925!8.44e-27!19;UBERON:0008836!8.44e-27!19;UBERON:0005057!3.29e-24!26;UBERON:0008835!5.25e-23!22;UBERON:0003894!5.25e-23!22;UBERON:0009854!5.82e-22!23;UBERON:0007499!4.03e-20!25;UBERON:0009497!4.03e-20!25;UBERON:0000015!4.03e-20!25;UBERON:0002423!4.03e-20!25;UBERON:0006235!4.03e-20!25;UBERON:0004161!4.03e-20!25;UBERON:0009856!2.63e-19!26;UBERON:0002530!7.49e-18!59;UBERON:0002368!4.56e-14!35;UBERON:0003929!1.60e-13!54;UBERON:0006915!1.77e-11!3;UBERON:0002018!1.77e-11!3;UBERON:0002217!1.77e-11!3;UBERON:0007616!1.77e-11!3;UBERON:0004921!3.07e-11!129;UBERON:0004185!3.07e-11!129;UBERON:0005172!9.72e-11!55;UBERON:0005173!9.72e-11!55;UBERON:0000949!1.06e-10!45;UBERON:0005911!3.68e-10!82;UBERON:0001041!6.98e-10!98;UBERON:0000077!1.11e-09!130;UBERON:0002417!1.50e-09!61;UBERON:0000916!1.50e-09!61;UBERON:0001736!1.99e-09!1;UBERON:0006298!1.99e-09!1;UBERON:0002146!3.53e-09!1;UBERON:0005623!3.53e-09!1;UBERON:0001007!6.51e-09!155;UBERON:0001555!6.51e-09!155;UBERON:0007026!6.51e-09!155;UBERON:0000466!1.38e-08!126;UBERON:0004119!5.90e-08!169;UBERON:0000925!5.90e-08!169;UBERON:0006595!5.90e-08!169;UBERON:0004905!3.14e-07!5;UBERON:0000982!3.14e-07!5;UBERON:0004770!3.14e-07!5;UBERON:0001048!6.27e-07!168;UBERON:0009569!7.02e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;6.31e-66;19!UBERON:0006925;6.31e-66;19!UBERON:0002423;4.19e-50;25!UBERON:0002365;7.41e-39;31!UBERON:0002330;7.41e-39;31!UBERON:0002368;2.98e-34;33!UBERON:0000949;4.96e-25;43!UBERON:0005172;6.18e-15;52!UBERON:0005173;6.18e-15;52!UBERON:0002417;4.49e-13;58!UBERON:0000916;4.49e-13;58!UBERON:0002530;6.05e-13;57!UBERON:0001007;3.87e-09;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,6.31e-66,19;UBERON:0006925,6.31e-66,19;UBERON:0008836,6.31e-66,19;UBERON:0008835,6.13e-57,22;UBERON:0003894,6.13e-57,22;UBERON:0009854,1.83e-54,23;UBERON:0007499,4.19e-50,25;UBERON:0009497,4.19e-50,25;UBERON:0000015,4.19e-50,25;UBERON:0002423,4.19e-50,25;UBERON:0006235,4.19e-50,25;UBERON:0004161,4.19e-50,25;UBERON:0009856,3.55e-48,26;UBERON:0002365,2.14e-40,31;UBERON:0002330,2.14e-40,31;UBERON:0002368,9.05e-36,35;UBERON:0000949,8.61e-28,45;UBERON:0003929,3.96e-23,54;UBERON:0005172,3.96e-23,54;UBERON:0005173,3.96e-23,54;UBERON:0002530,3.77e-21,59;UBERON:0002417,8.56e-21,60;UBERON:0000916,8.56e-21,60;UBERON:0005911,3.84e-15,82;UBERON:0001041,2.97e-14,87;UBERON:0005177,3.13e-12,101;UBERON:0009569,5.42e-11,112;UBERON:0003914,1.66e-10,117;UBERON:0004921,2.53e-10,118;UBERON:0005256,4.65e-10,122;UBERON:0001007,2.47e-08,145;UBERON:0001555,2.47e-08,145;UBERON:0007026,2.47e-08,145;UBERON:0000490,3.25e-08,148;UBERON:0001048,1.46e-07,160;UBERON:0003104,1.46e-07,160;UBERON:0009142,1.46e-07,160;UBERON:0004119,1.64e-07,160;UBERON:0000925,1.64e-07,160;UBERON:0006595,1.64e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,571.665207046457,153.32104580171,378.105540276099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,115.81809709204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,111.37211631893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349839999984783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,2.20592910460226,2.71972332657849,3.70719491198017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,217.190410310918,6.62534444561107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@APOF | |||
}} |
Revision as of 14:02, 11 January 2014
Short description: | p1@APOF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_APOF_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000398189, ENST00000541105, NM_001638, uc001sle.1_5end |
EntrezGene: | APOF |
HGNC: | 615 |
UniProt: | Q13790F5GXS5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 6.17e-59 | 12 |
endodermal cell | 3.03e-12 | 58 |