FFCP PHASE1:Hg19::chr17:27052878..27052889,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:27052878..27052889,+ | |||
|id=chr17:27052878..27052889,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.89e-12!254 | |||
|ontology_enrichment_celltype_v019=CL:0000650;2.45e-12;2!CL:1000500;2.45e-12;2!CL:1000618;2.45e-12;2!CL:1001318;2.45e-12;2!CL:0002173;2.45e-12;2!CL:0002367;2.45e-12;2!CL:0000307;1.17e-08;3!CL:0002327;6.49e-07;4!CL:0002563;8.37e-07;4!CL:0000669;8.37e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002367,2.32e-12,2;CL:0000650,3.62e-12,2;CL:1000500,3.62e-12,2;CL:1000618,3.62e-12,2;CL:1001318,3.62e-12,2;CL:0002173,3.62e-12,2;CL:0000068,1.30e-08,3;CL:0000069,1.30e-08,3;CL:0000307,1.30e-08,3;CL:0000377,1.30e-08,3;CL:0002327,6.50e-07,4;CL:0002563,8.61e-07,4;CL:0000066,8.89e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0008425;1.06e-23;1!UBERON:0008947;1.52e-12;29!CL:0000377;1.17e-08;3 | |||
|ontology_enrichment_disease=DOID:305!3.82e-20!106;DOID:0050687!4.83e-19!143;DOID:162!1.70e-13!235;DOID:14566!2.37e-13!239 | |||
|ontology_enrichment_disease_v019=DOID:5093;6.49e-07;4!DOID:1612;6.49e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,6.50e-07,4;DOID:1612,6.50e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001737!9.46e-15!9;UBERON:0008947!1.76e-10!38;UBERON:0003258!1.76e-10!38;UBERON:0000063!7.78e-10!97;UBERON:0000072!7.75e-08!46;UBERON:0000481!5.38e-07!347;UBERON:0004119!6.31e-07!169;UBERON:0000925!6.31e-07!169;UBERON:0006595!6.31e-07!169;UBERON:0000065!8.85e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.94e-39;9!UBERON:0001557;2.94e-39;9!UBERON:0000072;1.11e-14;37!UBERON:0000065;3.87e-14;44!UBERON:0003567;2.45e-12;2!UBERON:0003838;2.45e-12;2!UBERON:0003586;2.45e-12;2!UBERON:0005169;2.45e-12;2!UBERON:0002321;2.45e-12;2!UBERON:0005969;2.45e-12;2!UBERON:0005215;2.45e-12;2!UBERON:0002303;2.45e-12;2!UBERON:0002319;2.45e-12;2!UBERON:0003956;2.45e-12;2!UBERON:0001004;3.95e-07;65!UBERON:0001911;6.49e-07;4!UBERON:0001242;8.37e-07;4!UBERON:0001262;8.37e-07;4!UBERON:0004786;8.37e-07;4!UBERON:0004808;8.37e-07;4!UBERON:0003891;8.37e-07;4!UBERON:0001277;8.37e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.80e-39,9;UBERON:0001557,5.29e-19,19;UBERON:0008947,1.07e-14,38;UBERON:0003258,1.07e-14,38;UBERON:0005969,2.32e-12,2;UBERON:0003956,2.32e-12,2;UBERON:0003567,3.62e-12,2;UBERON:0003838,3.62e-12,2;UBERON:0003586,3.62e-12,2;UBERON:0005169,3.62e-12,2;UBERON:0002321,3.62e-12,2;UBERON:0005215,3.62e-12,2;UBERON:0002303,3.62e-12,2;UBERON:0002319,3.62e-12,2;UBERON:0000072,6.37e-12,47;UBERON:0000065,2.13e-10,54;UBERON:0001004,1.28e-07,74;UBERON:0001911,6.50e-07,4;UBERON:0005333,6.50e-07,4;UBERON:0008425,6.50e-07,4;UBERON:0005311,6.50e-07,4;UBERON:0001242,8.61e-07,4;UBERON:0001262,8.61e-07,4;UBERON:0004786,8.61e-07,4;UBERON:0004808,8.61e-07,4;UBERON:0001277,8.61e-07,4 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472674085820339,0.221729397462564,0.087834785693126,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0.122834317311768,0,0,0,0,0,0.336672227908132,0.250237039743928,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.121973706129595,0.132529768321485,0.348581828608555,0,0.252320850875628,0,0,0,0,0,0,0.473227200159376,1.01150814046861,1.20505514941741,1.54411561825352,0.653638332277218,0.474541238222193,0.808987848960987,1.76599318612811,0.38474715694639,0,0,0.4115740113314,0,0,0,0,0,1.10689594688802,0.171567810298526,0.329250856225877,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517086863031111,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0.231046011313244,0.784349769176855,0,0.105551628892876,0,0,0,0,0,1.00337954770971,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0.322260734604821,0,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0.6970372701606,0,0,0,0,0,0,0,0.38126038784765,0.255897791311334,0,0,0,0.359744915166629,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,1.13841952129715,0,0.0962221127255121,0,1.08890984861323,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0.245040215981032,0,0,0,0,0,0,0,0.324621940274555,0,0,0.156679895773023,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0.251932747854276,0,0,0,0.179736702294654,0,0,0,0,0,0,0.185536196323703,0,0,2.53633999988968,0,0,0.254253650292766,0.236387681767936,0.344743373241465,0,0,0,0,0,0,0,0.219385397153973,0.10893846351899,0,0,0,0.23056390438806,0.0897576444097721,0.977826347298073,0,0,0,0,0,0.166211681900156,0.451191321234361,0.19606253431774,0,0,0,0,0,0.424059214301822,0.432777279484182,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0.242780379534093,0,0,0,0,0.150323419414493,0.622129148383483,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0,0.17472666824203,0,0.290268993867255,0.146178634172371,0.0821154570532092,0.0969890164884194,0.0882561266915003,0,0,0,0.126621591911757,0,0.240476460754601,0,0,0,0.229073192331831,0,0.14405479798815,0,0.471388069233591,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0.236349546921671,0.247247575143499,0.337017719270924,0.196854963029498,0.169346664131569,0,0,0.321506296930038,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0.151230923763239,0.15543720058278,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0.107410557042488,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0.192914038270915,0.168942440653073,0,0.690860683462397,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0.20170506870352,0,0,0,0,0.0675375846183947,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.339848664884159,0.0657727735628491,0.236387681767936,0,0,0,0,0,0.215927591218621,0,0,0.158013611732727,0,0.173858272302579,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0.243835849964539,0,0,0,0,0,0.198950775161368,0,0.11294608203896,0.329821550236287,0.150962843566674,0,0,0,0,0.235676547101626,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0,0,0,0.271965960763659,0,0,0,0,0,0,0.109265571963696,0.253397002022874,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0.0814032686109745,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr17:27052878..27052889,+ | |||
}} |
Revision as of 14:26, 20 January 2014
Short description: | p@chr17:27052878..27052889, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:27052878..27052889, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
trabecular meshwork cell | 2.32e-12 | 2 |
mesangial cell | 3.62e-12 | 2 |
kidney interstitial cell | 3.62e-12 | 2 |
juxtaglomerular complex cell | 3.62e-12 | 2 |
renal interstitial pericyte | 3.62e-12 | 2 |
extraglomerular mesangial cell | 3.62e-12 | 2 |
duct epithelial cell | 1.30e-08 | 3 |
branched duct epithelial cell | 1.30e-08 | 3 |
tracheal epithelial cell | 1.30e-08 | 3 |
tracheoblast | 1.30e-08 | 3 |
mammary gland epithelial cell | 6.50e-07 | 4 |
intestinal epithelial cell | 8.61e-07 | 4 |
epithelial cell | 8.89e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.80e-39 | 9 |
upper respiratory tract | 5.29e-19 | 19 |
respiratory primordium | 1.07e-14 | 38 |
endoderm of foregut | 1.07e-14 | 38 |
reticulum trabeculare | 2.32e-12 | 2 |
aqueous drainage system | 2.32e-12 | 2 |
abdomen connective tissue | 3.62e-12 | 2 |
abdominal segment connective tissue | 3.62e-12 | 2 |
trunk connective tissue | 3.62e-12 | 2 |
interstitial tissue | 3.62e-12 | 2 |
extraglomerular mesangium | 3.62e-12 | 2 |
kidney interstitium | 3.62e-12 | 2 |
juxtaglomerular apparatus | 3.62e-12 | 2 |
mesangium | 3.62e-12 | 2 |
segment of respiratory tract | 6.37e-12 | 47 |
respiratory tract | 2.13e-10 | 54 |
respiratory system | 1.28e-07 | 74 |
mammary gland | 6.50e-07 | 4 |
mammary bud | 6.50e-07 | 4 |
mammary ridge | 6.50e-07 | 4 |
mammary placode | 6.50e-07 | 4 |
intestinal mucosa | 8.61e-07 | 4 |
wall of intestine | 8.61e-07 | 4 |
gastrointestinal system mucosa | 8.61e-07 | 4 |
gastrointestinal system epithelium | 8.61e-07 | 4 |
intestinal epithelium | 8.61e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 6.50e-07 | 4 |
breast cancer | 6.50e-07 | 4 |