FFCP PHASE1:Hg19::chr4:77356957..77356973,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57619 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-291bp_to_ENST00000497440_5end | |||
|coexpression_cluster_id=C1944 | |||
|description=CAGE_peak_20_at_SHROOM3_5end | |||
|id=chr4:77356957..77356973,+ | |||
|ontology_enrichment_celltype=CL:0000128!1.22e-15!7;CL:0000126!1.22e-15!7;CL:0000127!1.22e-15!7;CL:0002453!1.22e-15!7;CL:0002319!2.71e-09!25;CL:0000064!4.92e-08!3;CL:0005012!4.92e-08!3;CL:0000067!4.92e-08!3;CL:0002304!4.92e-08!3;CL:0002605!5.62e-08!3;CL:0002603!2.37e-07!3;CL:0000243!3.10e-07!15;CL:0000125!3.10e-07!15;CL:0000030!3.10e-07!15;CL:0000339!3.10e-07!15;CL:0000133!4.83e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000128;1.02e-46;7!CL:0000126;1.02e-46;7!CL:0000127;1.02e-46;7!CL:0000064;2.23e-40;3!CL:0000067;2.23e-40;3!CL:0005012;2.23e-40;3!CL:0002304;2.23e-40;3!CL:0002605;6.52e-40;3!CL:0000243;2.52e-19;15!CL:0000125;2.52e-19;15!CL:0002603;1.62e-18;3!CL:0000095;2.69e-17;17!CL:0000342;1.61e-14;1!CL:0002565;1.61e-14;1!CL:0000306;2.11e-14;4!CL:0002222;2.11e-14;4!CL:0002224;2.11e-14;4!CL:0000075;2.35e-12;27!CL:0002319;3.54e-12;25!CL:0002253;6.57e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,1.12e-46,7;CL:0000126,1.12e-46,7;CL:0000127,1.12e-46,7;CL:0002453,1.12e-46,7;CL:0000064,3.35e-40,3;CL:0000067,3.35e-40,3;CL:0005012,3.35e-40,3;CL:0002304,3.35e-40,3;CL:0002605,7.48e-40,3;CL:0000243,2.62e-19,15;CL:0000125,2.62e-19,15;CL:0000030,2.62e-19,15;CL:0000339,2.62e-19,15;CL:0002603,1.62e-18,3;CL:0000095,2.78e-17,17;CL:0000123,2.78e-17,17;CL:0000306,1.85e-14,4;CL:0002222,1.85e-14,4;CL:0002224,1.85e-14,4;CL:0000342,2.75e-14,1;CL:0002565,2.75e-14,1;CL:0000133,4.43e-13,59;CL:0000075,2.41e-12,27;CL:0002319,3.63e-12,25;CL:0000221,1.20e-10,72;CL:0002253,6.15e-08,2;CL:0000333,1.28e-07,41 | |||
|ontology_enrichment_development_v019=CL:0000339;2.52e-19;15!CL:0000133;2.14e-08;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!1.64e-54!86;UBERON:0007284!1.64e-54!86;UBERON:0002346!2.07e-51!90;UBERON:0005743!3.40e-48!86;UBERON:0001049!7.55e-47!57;UBERON:0005068!7.55e-47!57;UBERON:0006241!7.55e-47!57;UBERON:0007135!7.55e-47!57;UBERON:0001017!2.80e-44!82;UBERON:0000073!2.64e-42!94;UBERON:0001016!2.64e-42!94;UBERON:0002616!5.48e-42!59;UBERON:0003056!2.38e-41!61;UBERON:0000955!6.07e-38!69;UBERON:0006238!6.07e-38!69;UBERON:0000033!3.03e-36!123;UBERON:0000153!2.40e-35!129;UBERON:0007811!2.40e-35!129;UBERON:0002780!1.89e-33!41;UBERON:0001890!1.89e-33!41;UBERON:0006240!1.89e-33!41;UBERON:0003080!1.83e-32!42;UBERON:0004121!6.86e-31!169;UBERON:0000924!8.60e-30!173;UBERON:0006601!8.60e-30!173;UBERON:0002020!2.45e-27!34;UBERON:0003528!2.45e-27!34;UBERON:0001893!2.95e-27!34;UBERON:0001869!7.51e-27!32;UBERON:0002791!9.20e-26!33;UBERON:0000956!2.17e-21!25;UBERON:0000203!2.17e-21!25;UBERON:0007023!3.50e-19!115;UBERON:0002619!3.70e-16!22;UBERON:0007625!1.05e-15!11;UBERON:0001950!1.30e-15!20;UBERON:0003076!3.04e-15!15;UBERON:0003057!3.04e-15!15;UBERON:0004733!4.61e-13!12;UBERON:0002028!4.61e-13!12;UBERON:0007277!4.61e-13!12;UBERON:0000025!1.33e-12!194;UBERON:0000483!1.36e-12!309;UBERON:0000119!2.60e-12!312;UBERON:0004732!6.66e-12!13;UBERON:0000970!1.85e-11!20;UBERON:0000020!2.35e-11!23;UBERON:0002680!5.02e-11!9;UBERON:0001895!5.02e-11!9;UBERON:0010092!5.02e-11!9;UBERON:0002104!8.81e-11!21;UBERON:0001032!9.41e-11!24;UBERON:0004456!9.41e-11!24;UBERON:0000064!2.95e-10!219;UBERON:0000488!4.17e-10!4;UBERON:0000019!4.74e-10!19;UBERON:0000047!4.74e-10!19;UBERON:0004088!4.74e-10!19;UBERON:0003072!4.74e-10!19;UBERON:0003071!4.74e-10!19;UBERON:0004128!4.74e-10!19;UBERON:0000477!2.14e-09!286;UBERON:0000475!2.52e-09!365;UBERON:0004111!6.05e-09!241;UBERON:0001456!7.25e-09!21;UBERON:0001778!4.92e-08!3;UBERON:0001775!4.92e-08!3;UBERON:0000481!7.05e-08!347;UBERON:0001894!1.40e-07!7;UBERON:0006222!1.40e-07!7;UBERON:0002308!2.16e-07!9;UBERON:0000125!2.16e-07!9;UBERON:0001801!2.81e-07!14;UBERON:0000988!7.59e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000488;4.63e-53;4!UBERON:0007625;4.28e-43;11!UBERON:0001778;2.23e-40;3!UBERON:0001775;2.23e-40;3!UBERON:0002203;1.50e-35;6!UBERON:0001768;1.50e-35;6!UBERON:0002200;1.50e-35;6!UBERON:0001801;7.64e-34;14!UBERON:0000019;6.67e-25;19!UBERON:0000047;6.67e-25;19!UBERON:0004088;6.67e-25;19!UBERON:0010230;6.67e-25;19!UBERON:0000970;1.19e-23;20!UBERON:0002104;1.63e-22;21!UBERON:0001456;1.63e-22;21!UBERON:0000020;1.53e-20;23!UBERON:0001032;1.12e-19;24!UBERON:0004456;1.12e-19;24!UBERON:0006876;1.39e-19;11!UBERON:0010371;8.85e-15;31!UBERON:0002506;1.61e-14;1!UBERON:0001769;1.61e-14;1!UBERON:0010077;2.11e-14;4!UBERON:0005389;2.11e-14;4!UBERON:0000484;2.11e-14;4!UBERON:0000965;2.11e-14;4!UBERON:0001803;2.11e-14;4!UBERON:0002037;9.67e-10;6!UBERON:0002680;8.84e-07;9!UBERON:0001895;8.84e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000488,1.19e-52,4;UBERON:0007625,6.19e-43,11;UBERON:0001778,3.35e-40,3;UBERON:0001775,3.35e-40,3;UBERON:0002203,2.80e-35,6;UBERON:0001768,2.80e-35,6;UBERON:0002200,2.80e-35,6;UBERON:0001801,1.02e-33,14;UBERON:0000019,1.46e-23,20;UBERON:0000047,1.46e-23,20;UBERON:0010312,1.46e-23,20;UBERON:0004088,1.46e-23,20;UBERON:0010230,1.46e-23,20;UBERON:0003072,1.46e-23,20;UBERON:0004128,1.46e-23,20;UBERON:0003071,1.46e-23,20;UBERON:0000970,1.97e-22,21;UBERON:0002104,1.97e-22,21;UBERON:0001456,2.10e-21,22;UBERON:0000020,1.33e-19,24;UBERON:0001032,1.33e-19,24;UBERON:0004456,1.33e-19,24;UBERON:0006876,1.94e-19,11;UBERON:0003075,5.47e-18,82;UBERON:0007284,5.47e-18,82;UBERON:0002346,4.17e-17,86;UBERON:0003056,2.54e-16,61;UBERON:0005085,3.99e-15,31;UBERON:0010077,1.85e-14,4;UBERON:0005389,1.85e-14,4;UBERON:0000484,1.85e-14,4;UBERON:0002546,1.85e-14,4;UBERON:0000965,1.85e-14,4;UBERON:0001803,1.85e-14,4;UBERON:0003073,1.85e-14,4;UBERON:0005426,1.85e-14,4;UBERON:0002506,2.75e-14,1;UBERON:0001769,2.75e-14,1;UBERON:0010371,5.83e-14,104;UBERON:0010314,5.98e-13,132;UBERON:0002037,9.68e-10,6;UBERON:0006215,9.68e-10,6;UBERON:0001444,1.84e-09,49;UBERON:0000033,3.08e-08,56;UBERON:0004121,6.73e-08,171;UBERON:0000924,6.73e-08,171;UBERON:0006601,6.73e-08,171;UBERON:0000076,1.11e-07,8;UBERON:0000153,2.09e-07,62;UBERON:0007811,2.09e-07,62;UBERON:0002680,8.84e-07,9;UBERON:0001895,8.84e-07,9;UBERON:0010092,8.84e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10808952269109,0.204000691244253,1.56727360739044,1.71741592278634,1.23186982565596,1.00434111675842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.30871860074237,1.10864698731282,1.22968699970376,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.232387885739037,0.310983165046111,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,1.02940686179115,0,0,0,0,0,0,1.44331342025273,4.17349457910277,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.670065061337395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769350375349168,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30584991324076,0,0,0,0,0,0,0.422008249231538,0,0,2.95575571379191,0.398495976502139,0,0,0.715880777515084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.774054819518572,0,0,0.10893846351899,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29833183845255,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0.687944129886466,0,0,0,0.193978032976839,0,0.451961481561065,0,0,0.316553979779393,0,0,0,0,0,1.94712213482057,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0.254019996197353,0,0.272406812223151,0.321506296930038,0,0.83088067605837,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.26446520348538,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0.471162288750703,0,0,0.625954653532499,0,0.332787154610557,0.372578417648301,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.319267718114302,0.205116364240755,0.252071696221718,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0.270150338473579,0.781078098613847,0.413373593002368,0.253663240775627,0,0,0,0,0,0.535701835878287,0,0,0.682986574053893,0,0,0,0.611727596791485,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0.285906176706625,0,0,0.521574816907738,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0.294450700845729,0.243835849964539,0,0,0,0,0,0,0,0.90356865631168,0,0,0,0,0,0,0,0.392616934229891,0.594092800654172,0,0,0,0,0,0,0,0,0,0,0,0,0.271965960763659,0,0,0,0,0,0.630832124175395,0.437062287854782,0,0.101988829741982,0,0.0918948995348449,0,0.0757786982182394,0,0.829169439458779,0.310298987585686,0.213233981900981,0,0,0,0,0,0.202117188958219,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p20@SHROOM3 | |||
}} |
Revision as of 01:43, 22 January 2014
Short description: | p20@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_SHROOM3_5end |
Coexpression cluster: | C1944_Astrocyte_Ciliary_Lens_colon_teratocarcinoma_gastric_Neural |
Association with transcript: | -291bp_to_ENST00000497440_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 1.12e-46 | 7 |
macroglial cell | 1.12e-46 | 7 |
astrocyte | 1.12e-46 | 7 |
oligodendrocyte precursor cell | 1.12e-46 | 7 |
ciliated cell | 3.35e-40 | 3 |
ciliated epithelial cell | 3.35e-40 | 3 |
multi-ciliated epithelial cell | 3.35e-40 | 3 |
non-pigmented ciliary epithelial cell | 3.35e-40 | 3 |
astrocyte of the cerebral cortex | 7.48e-40 | 3 |
glial cell (sensu Vertebrata) | 2.62e-19 | 15 |
glial cell | 2.62e-19 | 15 |
glioblast | 2.62e-19 | 15 |
glioblast (sensu Vertebrata) | 2.62e-19 | 15 |
astrocyte of the cerebellum | 1.62e-18 | 3 |
neuron associated cell | 2.78e-17 | 17 |
neuron associated cell (sensu Vertebrata) | 2.78e-17 | 17 |
crystallin accumulating cell | 1.85e-14 | 4 |
vertebrate lens cell | 1.85e-14 | 4 |
lens epithelial cell | 1.85e-14 | 4 |
pigment cell (sensu Vertebrata) | 2.75e-14 | 1 |
iris pigment epithelial cell | 2.75e-14 | 1 |
neurectodermal cell | 4.43e-13 | 59 |
columnar/cuboidal epithelial cell | 2.41e-12 | 27 |
neural cell | 3.63e-12 | 25 |
ectodermal cell | 1.20e-10 | 72 |
epithelial cell of large intestine | 6.15e-08 | 2 |
migratory neural crest cell | 1.28e-07 | 41 |