FFCP PHASE1:Hg19::chr6:146285553..146285575,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=257218 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19336 | |||
|TSSclassifier=strong | |||
|UniProt=F8WEL0,Q149N8 | |||
|association_with_transcript=0bp_to_ENST00000444767,ENST00000519632,uc003qlj.1,uc003qlk.1_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_3_at_SHPRH_5end | |||
|id=chr6:146285553..146285575,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.02e-14!115;UBERON:0000073!3.11e-12!94;UBERON:0001016!3.11e-12!94;UBERON:0001017!8.15e-12!82;UBERON:0000955!1.04e-11!69;UBERON:0006238!1.04e-11!69;UBERON:0005743!2.07e-11!86;UBERON:0001049!1.55e-10!57;UBERON:0005068!1.55e-10!57;UBERON:0006241!1.55e-10!57;UBERON:0007135!1.55e-10!57;UBERON:0002346!2.72e-10!90;UBERON:0000924!5.33e-10!173;UBERON:0006601!5.33e-10!173;UBERON:0000153!7.31e-10!129;UBERON:0007811!7.31e-10!129;UBERON:0002616!1.22e-09!59;UBERON:0003075!2.00e-09!86;UBERON:0007284!2.00e-09!86;UBERON:0003080!2.72e-09!42;UBERON:0000033!2.80e-09!123;UBERON:0004121!3.01e-09!169;UBERON:0002780!8.07e-09!41;UBERON:0001890!8.07e-09!41;UBERON:0006240!8.07e-09!41;UBERON:0003056!4.67e-08!61;UBERON:0002020!2.69e-07!34;UBERON:0003528!2.69e-07!34;UBERON:0000956!4.59e-07!25;UBERON:0000203!4.59e-07!25;UBERON:0001869!9.82e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;3.56e-07;25!UBERON:0000203;3.56e-07;25!UBERON:0002780;5.29e-07;41!UBERON:0001890;5.29e-07;41!UBERON:0000073;7.04e-07;53!UBERON:0002616;7.04e-07;53!UBERON:0002791;7.79e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.20e-13,114;UBERON:0001016,1.54e-10,89;UBERON:0001049,6.48e-10,56;UBERON:0005068,6.48e-10,56;UBERON:0006241,6.48e-10,56;UBERON:0007135,6.48e-10,56;UBERON:0000955,8.74e-10,68;UBERON:0006238,8.74e-10,68;UBERON:0001017,1.46e-09,81;UBERON:0000073,1.60e-09,53;UBERON:0002616,1.60e-09,53;UBERON:0002780,2.74e-09,41;UBERON:0001890,2.74e-09,41;UBERON:0003080,2.74e-09,41;UBERON:0006240,2.74e-09,41;UBERON:0011216,3.93e-09,223;UBERON:0002346,8.20e-09,86;UBERON:0003075,5.34e-08,82;UBERON:0007284,5.34e-08,82;UBERON:0003528,3.10e-07,34;UBERON:0002020,3.10e-07,34;UBERON:0000956,3.31e-07,25;UBERON:0000203,3.31e-07,25;UBERON:0002791,4.32e-07,32 | |||
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| |||
|short_description=p3@SHPRH | |||
}} |
Revision as of 14:27, 22 January 2014
Short description: | p3@SHPRH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHPRH_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 0bp_to_ENST00000444767, ENST00000519632, uc003qlj.1, uc003qlk.1_5end |
EntrezGene: | SHPRH |
HGNC: | 19336 |
UniProt: | F8WEL0Q149N8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.20e-13 | 114 |
nervous system | 1.54e-10 | 89 |
neural tube | 6.48e-10 | 56 |
neural rod | 6.48e-10 | 56 |
future spinal cord | 6.48e-10 | 56 |
neural keel | 6.48e-10 | 56 |
brain | 8.74e-10 | 68 |
future brain | 8.74e-10 | 68 |
central nervous system | 1.46e-09 | 81 |
regional part of nervous system | 1.60e-09 | 53 |
regional part of brain | 1.60e-09 | 53 |
regional part of forebrain | 2.74e-09 | 41 |
forebrain | 2.74e-09 | 41 |
anterior neural tube | 2.74e-09 | 41 |
future forebrain | 2.74e-09 | 41 |
organ system subdivision | 3.93e-09 | 223 |
neurectoderm | 8.20e-09 | 86 |
neural plate | 5.34e-08 | 82 |
presumptive neural plate | 5.34e-08 | 82 |
brain grey matter | 3.10e-07 | 34 |
gray matter | 3.10e-07 | 34 |
cerebral cortex | 3.31e-07 | 25 |
pallium | 3.31e-07 | 25 |
regional part of telencephalon | 4.32e-07 | 32 |