Personal tools

CL:0000575: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000575
|alt_id=CL:1000431
|name=corneal epithelial cell
|namespace=cell
|def="An epithelial cell of the cornea." [GOC:tfm]
|xref=BTO:0004298;;FMA:70551
|is_a=CL:0000076;;CL:0002159
|synonym="epithelial cell of cornea" EXACT [FMA:70551]
|comment=
|comment=
|alt_id=CL:1000431
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelial cell of the cornea." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000575
|is_a=CL:0000076 ;;CL:0002159
|is_obsolete=
|located_in=
|located_in=
|name=corneal epithelial cell
|namespace=cell
|obo_creation_date=
|part_of=UBERON:0000964
|part_of=UBERON:0000964
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="epithelial cell of cornea" EXACT [FMA:70551]
|union_of=
|xref=BTO:0004298;;FMA:70551
}}
}}

Revision as of 10:19, 12 September 2014

Name:corneal epithelial cell
Namespace:cell
Definition:"An epithelial cell of the cornea." [GOC:tfm]
Xrefs:
links:

BTO:0004298

FMA:70551
Synonyms: "epithelial cell of cornea" EXACT [FMA:70551]
Alt_id: CL:1000431


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000076(squamous epithelial cell),CL:0002159(general ecto-epithelial cell)
part_of:UBERON:0000964(cornea)



Children


derives from:FF:0000043 (human corneal epithelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000575 (corneal epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.75e-130FFCP PHASE1:Hg19::chr17:39023189..39023197,-#_90bf3da6dacad70b4e649f6de228d926p2@KRT12
1.75e-130FFCP PHASE2:Hg19::chr17:39023189..39023197,-#_90bf3da6dacad70b4e649f6de228d926p2@KRT12
5.22e-79FFCP PHASE1:Hg19::chr12:53189894..53189905,-#_31da7e1eab806ba23a95e8e030629695p1@KRT3
5.22e-79FFCP PHASE2:Hg19::chr12:53189894..53189905,-#_31da7e1eab806ba23a95e8e030629695p1@KRT3
1.45e-66FFCP PHASE2:Hg19::chr22:30144620..30144638,-#_a8aaac293212445649188996bd0c3a4ep7@ZMAT5
1.45e-66FFCP PHASE1:Hg19::chr22:30144620..30144638,-#_a8aaac293212445649188996bd0c3a4ep7@ZMAT5
5.53e-66FFCP PHASE1:Hg19::chr8:124206334..124206344,+#_c7800194a2512c4b482572d2d64cb984p@chr8:124206334..124206344, +
5.53e-66FFCP PHASE2:Hg19::chr8:124206334..124206344,+#_c7800194a2512c4b482572d2d64cb984p@chr8:124206334..124206344, +
3.58e-57FFCP PHASE1:Hg19::chr7:1600419..1600429,-#_5f749558dbc014688ebb267b910ea4dep11@TMEM184A
3.58e-57FFCP PHASE2:Hg19::chr7:1600419..1600429,-#_5f749558dbc014688ebb267b910ea4dep11@TMEM184A
3.58e-57FFCP PHASE1:Hg19::chr1:19403546..19403571,-#_5f749558dbc014688ebb267b910ea4dep@chr1:19403546..19403571, -
3.58e-57FFCP PHASE2:Hg19::chr1:19403546..19403571,-#_5f749558dbc014688ebb267b910ea4dep@chr1:19403546..19403571, -
1.13e-56FFCP PHASE1:Hg19::chr20:43743762..43743770,-#_e184b8476153f343bd1e73373b73c578p3@WFDC5
1.13e-56FFCP PHASE2:Hg19::chr12:48164790..48164808,-#_e184b8476153f343bd1e73373b73c578p16@RAPGEF3
1.13e-56FFCP PHASE2:Hg19::chr20:43743762..43743770,-#_e184b8476153f343bd1e73373b73c578p3@WFDC5
1.13e-56FFCP PHASE1:Hg19::chr12:48164790..48164808,-#_e184b8476153f343bd1e73373b73c578p16@RAPGEF3
1.46e-50FFCP PHASE1:Hg19::chr6:35048829..35048844,+#_c4946595904361e7fcc408ac06827621p@chr6:35048829..35048844, +
1.46e-50FFCP PHASE2:Hg19::chr6:35048829..35048844,+#_c4946595904361e7fcc408ac06827621p@chr6:35048829..35048844, +
2.42e-50FFCP PHASE1:Hg19::chr11:67463189..67463193,-#_be4cbc302928fefb9d03265a2bcf8436p@chr11:67463189..67463193, -
2.42e-50FFCP PHASE2:Hg19::chr11:67463189..67463193,-#_be4cbc302928fefb9d03265a2bcf8436p@chr11:67463189..67463193, -
2.74e-50FFCP PHASE2:Hg19::chr16:3014251..3014254,+#_bf5bdfbd37690b5844031ef976abee5cp3@KREMEN2
2.74e-50FFCP PHASE1:Hg19::chr16:3014251..3014254,+#_bf5bdfbd37690b5844031ef976abee5cp3@KREMEN2
4.52e-50FFCP PHASE1:Hg19::chr16:56368957..56368963,+#_a0addc0f62790f25eb004b4f8f94a4e7p@chr16:56368957..56368963, +
4.52e-50FFCP PHASE2:Hg19::chr16:56368957..56368963,+#_a0addc0f62790f25eb004b4f8f94a4e7p@chr16:56368957..56368963, +
2.98e-44FFCP PHASE1:Hg19::chr12:46897588..46897603,+#_c51c0365e5e72184f582fd10efbff34ep@chr12:46897588..46897603, +
2.98e-44FFCP PHASE2:Hg19::chr12:46897588..46897603,+#_c51c0365e5e72184f582fd10efbff34ep@chr12:46897588..46897603, +
3.72e-44FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_b0dfda0464362ea238cd8926978f8d96p@chr13:20934450..20934456, +
3.72e-44FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_b0dfda0464362ea238cd8926978f8d96p@chr13:20934450..20934456, +
4.65e-44FFCP PHASE1:Hg19::chr19:51538096..51538109,-#_1a21d043fb99f99fc1955bbd18a065c9p5@KLK12
4.65e-44FFCP PHASE2:Hg19::chr19:51538096..51538109,-#_1a21d043fb99f99fc1955bbd18a065c9p5@KLK12
7.33e-41FFCP PHASE1:Hg19::chr10:5529595..5529606,-#_6c6f1c6f9cbd39a7c634f429d2c7702ep@chr10:5529595..5529606, -
7.33e-41FFCP PHASE2:Hg19::chr10:5529595..5529606,-#_6c6f1c6f9cbd39a7c634f429d2c7702ep@chr10:5529595..5529606, -
3.68e-40FFCP PHASE1:Hg19::chr2:131669803..131669810,+#_88cc01231820acd1e92e600b8f445f33p@chr2:131669803..131669810, +
3.68e-40FFCP PHASE2:Hg19::chr2:131669803..131669810,+#_88cc01231820acd1e92e600b8f445f33p@chr2:131669803..131669810, +
4.49e-40FFCP PHASE1:Hg19::chr9:127212697..127212708,+#_37c8c52d93c2c95078562376ec0e9432p@chr9:127212697..127212708, +
4.49e-40FFCP PHASE2:Hg19::chr9:127212697..127212708,+#_37c8c52d93c2c95078562376ec0e9432p@chr9:127212697..127212708, +
6.7e-40FFCP PHASE1:Hg19::chr19:1905001..1905006,+#_777fe8956505c9560a7665b018e5c4e3p11@SCAMP4
6.7e-40FFCP PHASE2:Hg19::chr19:1905001..1905006,+#_777fe8956505c9560a7665b018e5c4e3p11@SCAMP4
9.99e-40FFCP PHASE1:Hg19::chr15:72490099..72490109,-#_d628a1a50c29e0e9b474687ba35e2369p3@GRAMD2
9.99e-40FFCP PHASE2:Hg19::chr19:50709335..50709346,+#_d628a1a50c29e0e9b474687ba35e2369p@chr19:50709335..50709346, +
9.99e-40FFCP PHASE1:Hg19::chr19:50709335..50709346,+#_d628a1a50c29e0e9b474687ba35e2369p@chr19:50709335..50709346, +
9.99e-40FFCP PHASE2:Hg19::chr15:72490099..72490109,-#_d628a1a50c29e0e9b474687ba35e2369p3@GRAMD2
1.18e-36FFCP PHASE1:Hg19::chr19:44306567..44306574,-#_3a12264dfc71f7aac476a4e020b02874p7@LYPD5
1.18e-36FFCP PHASE2:Hg19::chr19:44306567..44306574,-#_3a12264dfc71f7aac476a4e020b02874p7@LYPD5
2.04e-36FFCP PHASE2:Hg19::chr2:28853455..28853476,+#_7878fd37c9ab8a2e9ec12d673fc91e58p@chr2:28853455..28853476, +
2.04e-36FFCP PHASE1:Hg19::chr2:28853455..28853476,+#_7878fd37c9ab8a2e9ec12d673fc91e58p@chr2:28853455..28853476, +
2.45e-36FFCP PHASE1:Hg19::chr19:51538121..51538134,-#_e61e5dfe009f83eddc45b388a6d7dfd9p4@KLK12
2.45e-36FFCP PHASE2:Hg19::chr19:51538121..51538134,-#_e61e5dfe009f83eddc45b388a6d7dfd9p4@KLK12
2.45e-36FFCP PHASE1:Hg19::chr20:42816206..42816211,-#_e61e5dfe009f83eddc45b388a6d7dfd9p8@JPH2
2.45e-36FFCP PHASE2:Hg19::chr20:42816206..42816211,-#_e61e5dfe009f83eddc45b388a6d7dfd9p8@JPH2
5.04e-34FFCP PHASE2:Hg19::chr5:59064162..59064173,-#_d007bdcb0307f034c0d0fce01314a135p72@PDE4D
5.04e-34FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_d007bdcb0307f034c0d0fce01314a135p@chr3:124535316..124535340, +
5.04e-34FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_d007bdcb0307f034c0d0fce01314a135p@chr3:124535316..124535340, +
5.04e-34FFCP PHASE1:Hg19::chr5:59064162..59064173,-#_d007bdcb0307f034c0d0fce01314a135p72@PDE4D
1.64e-33FFCP PHASE2:Hg19::chr11:119039069..119039081,+#_716f9126541edb5b2d67db3a45476441p9@NLRX1
1.64e-33FFCP PHASE1:Hg19::chr11:119039069..119039081,+#_716f9126541edb5b2d67db3a45476441p9@NLRX1
1.0e-31FFCP PHASE2:Hg19::chr12:48164812..48164829,-#_4049485dd66893b4a1ea85789d43dadep14@RAPGEF3
1.0e-31FFCP PHASE1:Hg19::chr12:48164812..48164829,-#_4049485dd66893b4a1ea85789d43dadep14@RAPGEF3
1.6e-31FFCP PHASE1:Hg19::chr2:131669791..131669801,+#_aad76f026133be270bfff9a7729ac214p@chr2:131669791..131669801, +
1.6e-31FFCP PHASE2:Hg19::chr2:131669791..131669801,+#_aad76f026133be270bfff9a7729ac214p@chr2:131669791..131669801, +
2.54e-31FFCP PHASE2:Hg19::chr17:39742822..39742850,+#_d214b896389af88a9ddd11193369b63ep@chr17:39742822..39742850, +
2.54e-31FFCP PHASE1:Hg19::chr17:39742822..39742850,+#_d214b896389af88a9ddd11193369b63ep@chr17:39742822..39742850, +
2.97e-31FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_41a2e9d80109e6fd7057e1d79f95c38cp@chr1:3591362..3591369, -
2.97e-31FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_41a2e9d80109e6fd7057e1d79f95c38cp@chr1:3591362..3591369, -
4.71e-31FFCP PHASE1:Hg19::chr21:38631055..38631068,-#_321e7c6308a108aa3519fb898ea8f2a7p@chr21:38631055..38631068, -
4.71e-31FFCP PHASE2:Hg19::chr21:38631055..38631068,-#_321e7c6308a108aa3519fb898ea8f2a7p@chr21:38631055..38631068, -
5.5e-31FFCP PHASE1:Hg19::chr12:57328113..57328161,-#_c33f9b12986239862fd0bd98acc3983cp2@SDR9C7
5.5e-31FFCP PHASE2:Hg19::chr12:57328113..57328161,-#_c33f9b12986239862fd0bd98acc3983cp2@SDR9C7
7.48e-31FFCP PHASE1:Hg19::chr17:26833250..26833262,+#_dfa83f0d095e4494b3b24b339f7c25b5p2@FOXN1
7.48e-31FFCP PHASE2:Hg19::chr17:26833250..26833262,+#_dfa83f0d095e4494b3b24b339f7c25b5p2@FOXN1
4.49e-30FFCP PHASE2:Hg19::chr1:26498321..26498327,-#_6ef71982b06e3132f19e71c4ca7a321fp1@ENST00000448923
4.49e-30FFCP PHASE1:Hg19::chr1:26498321..26498327,-#_6ef71982b06e3132f19e71c4ca7a321fp1@ENST00000448923
6.02e-30FFCP PHASE2:Hg19::chr17:39743195..39743199,-#_563c590a7bdc0c3a94fdc92c273e9222p8@KRT14
6.02e-30FFCP PHASE1:Hg19::chr17:39743195..39743199,-#_563c590a7bdc0c3a94fdc92c273e9222p8@KRT14
6.99e-29FFCP PHASE1:Hg19::chr19:35609361..35609378,+#_282bc2df1b20c968022f9525db48febdp@chr19:35609361..35609378, +
6.99e-29FFCP PHASE2:Hg19::chr19:35609361..35609378,+#_282bc2df1b20c968022f9525db48febdp@chr19:35609361..35609378, +
9.3e-29FFCP PHASE2:Hg19::chr10:88729123..88729131,-#_55201d3f1e2321c89f6f4e3a4feb1928p2@ENST00000418273
9.3e-29FFCP PHASE1:Hg19::chr10:88729123..88729131,-#_55201d3f1e2321c89f6f4e3a4feb1928p2@ENST00000418273
1.43e-28FFCP PHASE1:Hg19::chr5:147582412..147582423,+#_07d2a01f519f9d09411ede7182bfa0eep9@SPINK6
1.43e-28FFCP PHASE2:Hg19::chr5:147582412..147582423,+#_07d2a01f519f9d09411ede7182bfa0eep9@SPINK6
5.41e-28FFCP PHASE1:Hg19::chr7:2019948..2019961,-#_fb044fd7bddd3e48cd0927ef5ce7e128p@chr7:2019948..2019961, -
5.41e-28FFCP PHASE2:Hg19::chr7:2019948..2019961,-#_fb044fd7bddd3e48cd0927ef5ce7e128p@chr7:2019948..2019961, -
6.2e-28FFCP PHASE1:Hg19::chr1:209601525..209601530,+#_a9512845d98bd5d6b1e91989fe0d739ep@chr1:209601525..209601530, +
6.2e-28FFCP PHASE2:Hg19::chr1:209601525..209601530,+#_a9512845d98bd5d6b1e91989fe0d739ep@chr1:209601525..209601530, +
9.31e-28FFCP PHASE2:Hg19::chr12:52887237..52887248,-#_4c9d3691156c4377e524aea78edb6f91p12@KRT6A
9.31e-28FFCP PHASE1:Hg19::chr12:52887237..52887248,-#_4c9d3691156c4377e524aea78edb6f91p12@KRT6A
1.07e-27FFCP PHASE1:Hg19::chr7:157086249..157086269,-#_d7548db929426f965635135cf115f70bp@chr7:157086249..157086269, -
1.07e-27FFCP PHASE2:Hg19::chr7:157086249..157086269,-#_d7548db929426f965635135cf115f70bp@chr7:157086249..157086269, -
2.39e-27FFCP PHASE2:Hg19::chr5:167182003..167182007,-#_fdc8224e2685916204d43d974cd051d0p@chr5:167182003..167182007, -
2.39e-27FFCP PHASE1:Hg19::chr5:167182003..167182007,-#_fdc8224e2685916204d43d974cd051d0p@chr5:167182003..167182007, -
2.16e-26FFCP PHASE1:Hg19::chr19:18870833..18870850,+#_9f550958cb2dfc496d26e3d8c4b7d874p@chr19:18870833..18870850, +
2.16e-26FFCP PHASE2:Hg19::chr19:18870833..18870850,+#_9f550958cb2dfc496d26e3d8c4b7d874p@chr19:18870833..18870850, +
4.32e-26FFCP PHASE1:Hg19::chr1:153321274..153321283,-#_82f14e5de791a76ba67fc9629336f815p2@PGLYRP4
4.32e-26FFCP PHASE2:Hg19::chr1:153321274..153321283,-#_82f14e5de791a76ba67fc9629336f815p2@PGLYRP4
8.7e-26FFCP PHASE1:Hg19::chr4:160356236..160356245,+#_1cc6901845d0b888b4b3eb6206aee730p@chr4:160356236..160356245, +
8.7e-26FFCP PHASE1:Hg19::chr1:153004879..153004890,+#_1cc6901845d0b888b4b3eb6206aee730p4@SPRR1B
8.7e-26FFCP PHASE2:Hg19::chr4:160356236..160356245,+#_1cc6901845d0b888b4b3eb6206aee730p@chr4:160356236..160356245, +
8.7e-26FFCP PHASE2:Hg19::chr1:153004879..153004890,+#_1cc6901845d0b888b4b3eb6206aee730p4@SPRR1B
9.87e-26FFCP PHASE1:Hg19::chr17:48611940..48611947,+#_415ab76c3452b41a9fd5525d3686570cp5@EPN3
9.87e-26FFCP PHASE2:Hg19::chr17:48611940..48611947,+#_415ab76c3452b41a9fd5525d3686570cp5@EPN3

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000575&oldid=3271972"