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{{DOID
{{DOID
|id=DOID:0060073
|alt_id=
|name=lymphatic system cancer
|namespace=disease_ontology
|def="An immune system cancer that is located_in the lymphatic system and is characterized by uncontrolled cellular proliferation of lymphoid tissue." [url:http://en.wikipedia.org/wiki/Lymphatic_system]
|xref=
|is_a=DOID:0060083
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=lschriml
|created_by=lschriml
|obo_creation_date=2011-05-11T01:05:14Z
|def="An immune system cancer that is located_in the lymphatic system and is characterized by uncontrolled cellular proliferation of lymphoid tissue." [url:http://en.wikipedia.org/wiki/Lymphatic_system]
|subset=
|derives_from=
|derives_from=
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|id=DOID:0060073
|is_a=DOID:0060083
|is_obsolete=
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|name=lymphatic system cancer
|namespace=disease_ontology
|obo_creation_date=2011-05-11T01:05:14Z
|part_of=
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|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
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}}
}}

Revision as of 10:32, 12 September 2014

Name:lymphatic system cancer
Namespace:disease_ontology
Definition:"An immune system cancer that is located_in the lymphatic system and is characterized by uncontrolled cellular proliferation of lymphoid tissue." [url:http://en.wikipedia.org/wiki/Lymphatic_system]
Created by:lschriml
Creation date:2011-05-11T01:05:14Z

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0060083(immune system cancer)



Children


is a:DOID:8675 (lymphosarcoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

  • 10631-108I1 (diffuse large B-cell lymphoma cell line:CTB-1)

Mouse (Mus musculus)

  • 10631-108I1 (diffuse large B-cell lymphoma cell line:CTB-1)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0060073 (lymphatic system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chrX:89012355..89012363,+#_02bb8b51702cd84071d88aebbb80bb97p@chrX:89012355..89012363, +
5.42e-195FFCP PHASE1:Hg19::chr12:122462770..122462775,+#_02bb8b51702cd84071d88aebbb80bb97p@chr12:122462770..122462775, +
5.42e-195FFCP PHASE2:Hg19::chr3:19436672..19436686,+#_02bb8b51702cd84071d88aebbb80bb97p@chr3:19436672..19436686, +
5.42e-195FFCP PHASE2:Hg19::chr12:122462770..122462775,+#_02bb8b51702cd84071d88aebbb80bb97p@chr12:122462770..122462775, +
5.42e-195FFCP PHASE1:Hg19::chr14:53594794..53594799,+#_02bb8b51702cd84071d88aebbb80bb97p@chr14:53594794..53594799, +
5.42e-195FFCP PHASE1:Hg19::chr6:39962337..39962342,+#_02bb8b51702cd84071d88aebbb80bb97p@chr6:39962337..39962342, +
5.42e-195FFCP PHASE1:Hg19::chr22:23234780..23234786,+#_02bb8b51702cd84071d88aebbb80bb97p@chr22:23234780..23234786, +
5.42e-195FFCP PHASE2:Hg19::chr11:26122006..26122011,-#_02bb8b51702cd84071d88aebbb80bb97p@chr11:26122006..26122011, -
5.42e-195FFCP PHASE2:Hg19::chr14:53594794..53594799,+#_02bb8b51702cd84071d88aebbb80bb97p@chr14:53594794..53594799, +
5.42e-195FFCP PHASE1:Hg19::chr11:26122006..26122011,-#_02bb8b51702cd84071d88aebbb80bb97p@chr11:26122006..26122011, -
5.42e-195FFCP PHASE2:Hg19::chr6:39962337..39962342,+#_02bb8b51702cd84071d88aebbb80bb97p@chr6:39962337..39962342, +
5.42e-195FFCP PHASE2:Hg19::chr22:23234780..23234786,+#_02bb8b51702cd84071d88aebbb80bb97p@chr22:23234780..23234786, +
5.42e-195FFCP PHASE1:Hg19::chrX:42727038..42727047,-#_02bb8b51702cd84071d88aebbb80bb97p@chrX:42727038..42727047, -
5.42e-195FFCP PHASE1:Hg19::chr9:138904824..138904829,+#_02bb8b51702cd84071d88aebbb80bb97p@chr9:138904824..138904829, +
5.42e-195FFCP PHASE2:Hg19::chrX:42727038..42727047,-#_02bb8b51702cd84071d88aebbb80bb97p@chrX:42727038..42727047, -
5.42e-195FFCP PHASE2:Hg19::chr9:138904824..138904829,+#_02bb8b51702cd84071d88aebbb80bb97p@chr9:138904824..138904829, +
5.42e-195FFCP PHASE2:Hg19::chr11:26124040..26124064,-#_02bb8b51702cd84071d88aebbb80bb97p@chr11:26124040..26124064, -
5.42e-195FFCP PHASE1:Hg19::chr11:26124040..26124064,-#_02bb8b51702cd84071d88aebbb80bb97p@chr11:26124040..26124064, -
5.42e-195FFCP PHASE1:Hg19::chr4:8046897..8046900,+#_02bb8b51702cd84071d88aebbb80bb97p@chr4:8046897..8046900, +
5.42e-195FFCP PHASE1:Hg19::chr12:117256221..117256231,+#_02bb8b51702cd84071d88aebbb80bb97p@chr12:117256221..117256231, +
5.42e-195FFCP PHASE1:Hg19::chr15:66464730..66464736,-#_02bb8b51702cd84071d88aebbb80bb97p@chr15:66464730..66464736, -
5.42e-195FFCP PHASE2:Hg19::chr12:117256221..117256231,+#_02bb8b51702cd84071d88aebbb80bb97p@chr12:117256221..117256231, +
5.42e-195FFCP PHASE2:Hg19::chr15:66464730..66464736,-#_02bb8b51702cd84071d88aebbb80bb97p@chr15:66464730..66464736, -
5.42e-195FFCP PHASE2:Hg19::chr4:8046897..8046900,+#_02bb8b51702cd84071d88aebbb80bb97p@chr4:8046897..8046900, +
5.42e-195FFCP PHASE1:Hg19::chr4:176353908..176353917,-#_02bb8b51702cd84071d88aebbb80bb97p@chr4:176353908..176353917, -
5.42e-195FFCP PHASE2:Hg19::chr4:176353908..176353917,-#_02bb8b51702cd84071d88aebbb80bb97p@chr4:176353908..176353917, -
5.42e-195FFCP PHASE1:Hg19::chr12:8808206..8808209,-#_02bb8b51702cd84071d88aebbb80bb97p@chr12:8808206..8808209, -
5.42e-195FFCP PHASE1:Hg19::chr4:8046990..8046993,-#_02bb8b51702cd84071d88aebbb80bb97p@chr4:8046990..8046993, -
5.42e-195FFCP PHASE2:Hg19::chr12:4313331..4313334,+#_02bb8b51702cd84071d88aebbb80bb97p@chr12:4313331..4313334, +
5.42e-195FFCP PHASE2:Hg19::chr12:8808206..8808209,-#_02bb8b51702cd84071d88aebbb80bb97p@chr12:8808206..8808209, -
5.42e-195FFCP PHASE2:Hg19::chr4:8046990..8046993,-#_02bb8b51702cd84071d88aebbb80bb97p@chr4:8046990..8046993, -
5.42e-195FFCP PHASE1:Hg19::chr4:176358284..176358287,-#_02bb8b51702cd84071d88aebbb80bb97p@chr4:176358284..176358287, -
5.42e-195FFCP PHASE1:Hg19::chr12:122458855..122458857,+#_02bb8b51702cd84071d88aebbb80bb97p16@BCL7A
5.42e-195FFCP PHASE1:Hg19::chr12:4313331..4313334,+#_02bb8b51702cd84071d88aebbb80bb97p@chr12:4313331..4313334, +
5.42e-195FFCP PHASE2:Hg19::chr4:176358284..176358287,-#_02bb8b51702cd84071d88aebbb80bb97p@chr4:176358284..176358287, -
5.42e-195FFCP PHASE2:Hg19::chr12:122458855..122458857,+#_02bb8b51702cd84071d88aebbb80bb97p16@BCL7A
5.42e-195FFCP PHASE1:Hg19::chr6:39962295..39962305,+#_02bb8b51702cd84071d88aebbb80bb97p@chr6:39962295..39962305, +
5.42e-195FFCP PHASE1:Hg19::chrX:89012355..89012363,+#_02bb8b51702cd84071d88aebbb80bb97p@chrX:89012355..89012363, +
5.42e-195FFCP PHASE1:Hg19::chr3:19436672..19436686,+#_02bb8b51702cd84071d88aebbb80bb97p@chr3:19436672..19436686, +
5.42e-195FFCP PHASE2:Hg19::chr6:39962295..39962305,+#_02bb8b51702cd84071d88aebbb80bb97p@chr6:39962295..39962305, +
9.37e-99FFCP PHASE2:Hg19::chr10:560037..560049,-#_6f2e587935a20d63cff79e18a2ae204cp@chr10:560037..560049, -
9.37e-99FFCP PHASE1:Hg19::chrX:42727011..42727017,-#_6f2e587935a20d63cff79e18a2ae204cp@chrX:42727011..42727017, -
9.37e-99FFCP PHASE1:Hg19::chr15:66446174..66446184,-#_6f2e587935a20d63cff79e18a2ae204cp@chr15:66446174..66446184, -
9.37e-99FFCP PHASE2:Hg19::chr12:11905335..11905342,+#_6f2e587935a20d63cff79e18a2ae204cp28@ETV6
9.37e-99FFCP PHASE2:Hg19::chr15:84653070..84653073,+#_6f2e587935a20d63cff79e18a2ae204cp@chr15:84653070..84653073, +
9.37e-99FFCP PHASE2:Hg19::chrX:42727011..42727017,-#_6f2e587935a20d63cff79e18a2ae204cp@chrX:42727011..42727017, -
9.37e-99FFCP PHASE1:Hg19::chr7:47143537..47143540,-#_6f2e587935a20d63cff79e18a2ae204cp@chr7:47143537..47143540, -
9.37e-99FFCP PHASE2:Hg19::chr15:66446174..66446184,-#_6f2e587935a20d63cff79e18a2ae204cp@chr15:66446174..66446184, -
9.37e-99FFCP PHASE1:Hg19::chr12:122459199..122459208,+#_6f2e587935a20d63cff79e18a2ae204cp13@BCL7A
9.37e-99FFCP PHASE1:Hg19::chr8:9578005..9578014,+#_6f2e587935a20d63cff79e18a2ae204cp22@TNKS
9.37e-99FFCP PHASE2:Hg19::chr12:122459199..122459208,+#_6f2e587935a20d63cff79e18a2ae204cp13@BCL7A
9.37e-99FFCP PHASE1:Hg19::chr10:560037..560049,-#_6f2e587935a20d63cff79e18a2ae204cp@chr10:560037..560049, -
9.37e-99FFCP PHASE1:Hg19::chr15:66446191..66446202,-#_6f2e587935a20d63cff79e18a2ae204cp@chr15:66446191..66446202, -
9.37e-99FFCP PHASE2:Hg19::chr8:9578005..9578014,+#_6f2e587935a20d63cff79e18a2ae204cp22@TNKS
9.37e-99FFCP PHASE2:Hg19::chr15:66446191..66446202,-#_6f2e587935a20d63cff79e18a2ae204cp@chr15:66446191..66446202, -
9.37e-99FFCP PHASE1:Hg19::chr4:176346295..176346296,-#_6f2e587935a20d63cff79e18a2ae204cp@chr4:176346295..176346296, -
9.37e-99FFCP PHASE2:Hg19::chr4:176346295..176346296,-#_6f2e587935a20d63cff79e18a2ae204cp@chr4:176346295..176346296, -
9.37e-99FFCP PHASE2:Hg19::chr7:47225953..47225964,-#_6f2e587935a20d63cff79e18a2ae204cp@chr7:47225953..47225964, -
9.37e-99FFCP PHASE1:Hg19::chr9:71805723..71805737,+#_6f2e587935a20d63cff79e18a2ae204cp@chr9:71805723..71805737, +
9.37e-99FFCP PHASE1:Hg19::chrX:42727059..42727068,-#_6f2e587935a20d63cff79e18a2ae204cp@chrX:42727059..42727068, -
9.37e-99FFCP PHASE2:Hg19::chr12:4313305..4313315,+#_6f2e587935a20d63cff79e18a2ae204cp@chr12:4313305..4313315, +
9.37e-99FFCP PHASE2:Hg19::chrX:42727059..42727068,-#_6f2e587935a20d63cff79e18a2ae204cp@chrX:42727059..42727068, -
9.37e-99FFCP PHASE1:Hg19::chr7:47225953..47225964,-#_6f2e587935a20d63cff79e18a2ae204cp@chr7:47225953..47225964, -
9.37e-99FFCP PHASE2:Hg19::chr9:71805723..71805737,+#_6f2e587935a20d63cff79e18a2ae204cp@chr9:71805723..71805737, +
9.37e-99FFCP PHASE1:Hg19::chr12:4313305..4313315,+#_6f2e587935a20d63cff79e18a2ae204cp@chr12:4313305..4313315, +
9.37e-99FFCP PHASE1:Hg19::chr14:106332392..106332397,-#_6f2e587935a20d63cff79e18a2ae204cp@chr14:106332392..106332397, -
9.37e-99FFCP PHASE1:Hg19::chr9:120707790..120707797,-#_6f2e587935a20d63cff79e18a2ae204cp@chr9:120707790..120707797, -
9.37e-99FFCP PHASE1:Hg19::chr9:96059957..96059996,+#_6f2e587935a20d63cff79e18a2ae204cp@chr9:96059957..96059996, +
9.37e-99FFCP PHASE1:Hg19::chr14:91750002..91750014,-#_6f2e587935a20d63cff79e18a2ae204cp21@CCDC88C
9.37e-99FFCP PHASE2:Hg19::chr7:47225965..47225970,-#_6f2e587935a20d63cff79e18a2ae204cp@chr7:47225965..47225970, -
9.37e-99FFCP PHASE2:Hg19::chr14:106332392..106332397,-#_6f2e587935a20d63cff79e18a2ae204cp@chr14:106332392..106332397, -
9.37e-99FFCP PHASE2:Hg19::chr14:91750002..91750014,-#_6f2e587935a20d63cff79e18a2ae204cp21@CCDC88C
9.37e-99FFCP PHASE1:Hg19::chr6:39962285..39962290,+#_6f2e587935a20d63cff79e18a2ae204cp@chr6:39962285..39962290, +
9.37e-99FFCP PHASE2:Hg19::chr9:120707790..120707797,-#_6f2e587935a20d63cff79e18a2ae204cp@chr9:120707790..120707797, -
9.37e-99FFCP PHASE2:Hg19::chr9:96059957..96059996,+#_6f2e587935a20d63cff79e18a2ae204cp@chr9:96059957..96059996, +
9.37e-99FFCP PHASE1:Hg19::chr7:47225965..47225970,-#_6f2e587935a20d63cff79e18a2ae204cp@chr7:47225965..47225970, -
9.37e-99FFCP PHASE2:Hg19::chr6:39962285..39962290,+#_6f2e587935a20d63cff79e18a2ae204cp@chr6:39962285..39962290, +
9.37e-99FFCP PHASE2:Hg19::chr11:27062798..27062805,+#_6f2e587935a20d63cff79e18a2ae204cp15@BBOX1
9.37e-99FFCP PHASE1:Hg19::chr15:66446160..66446166,-#_6f2e587935a20d63cff79e18a2ae204cp@chr15:66446160..66446166, -
9.37e-99FFCP PHASE1:Hg19::chr11:27062798..27062805,+#_6f2e587935a20d63cff79e18a2ae204cp15@BBOX1
9.37e-99FFCP PHASE2:Hg19::chr15:66446160..66446166,-#_6f2e587935a20d63cff79e18a2ae204cp@chr15:66446160..66446166, -
9.37e-99FFCP PHASE2:Hg19::chr7:47226019..47226026,-#_6f2e587935a20d63cff79e18a2ae204cp@chr7:47226019..47226026, -
9.37e-99FFCP PHASE1:Hg19::chr7:47226019..47226026,-#_6f2e587935a20d63cff79e18a2ae204cp@chr7:47226019..47226026, -
9.37e-99FFCP PHASE1:Hg19::chr15:84653070..84653073,+#_6f2e587935a20d63cff79e18a2ae204cp@chr15:84653070..84653073, +
9.37e-99FFCP PHASE2:Hg19::chr7:47143537..47143540,-#_6f2e587935a20d63cff79e18a2ae204cp@chr7:47143537..47143540, -
9.37e-99FFCP PHASE1:Hg19::chr12:11905335..11905342,+#_6f2e587935a20d63cff79e18a2ae204cp28@ETV6
2.55e-98FFCP PHASE1:Hg19::chr9:37327677..37327701,+#_1141a9dcc077acd67e66fa22d837db11p9@ZCCHC7
2.55e-98FFCP PHASE1:Hg19::chr8:129203016..129203026,-#_1141a9dcc077acd67e66fa22d837db11p@chr8:129203016..129203026, -
2.55e-98FFCP PHASE2:Hg19::chr9:37327677..37327701,+#_1141a9dcc077acd67e66fa22d837db11p9@ZCCHC7
2.55e-98FFCP PHASE2:Hg19::chr8:129203016..129203026,-#_1141a9dcc077acd67e66fa22d837db11p@chr8:129203016..129203026, -
2.55e-98FFCP PHASE1:Hg19::chr8:2507680..2507685,+#_1141a9dcc077acd67e66fa22d837db11p@chr8:2507680..2507685, +
2.55e-98FFCP PHASE2:Hg19::chr8:2507680..2507685,+#_1141a9dcc077acd67e66fa22d837db11p@chr8:2507680..2507685, +
2.55e-98FFCP PHASE1:Hg19::chr5:78065881..78065890,-#_1141a9dcc077acd67e66fa22d837db11p29@LHFPL2
2.55e-98FFCP PHASE1:Hg19::chr9:37327716..37327725,+#_1141a9dcc077acd67e66fa22d837db11p12@ZCCHC7
2.55e-98FFCP PHASE1:Hg19::chr8:49585125..49585132,+#_1141a9dcc077acd67e66fa22d837db11p@chr8:49585125..49585132, +
2.55e-98FFCP PHASE2:Hg19::chr5:78065881..78065890,-#_1141a9dcc077acd67e66fa22d837db11p29@LHFPL2
2.55e-98FFCP PHASE2:Hg19::chr11:23621457..23621480,+#_1141a9dcc077acd67e66fa22d837db11p@chr11:23621457..23621480, +
2.55e-98FFCP PHASE1:Hg19::chr17:70016724..70016733,-#_1141a9dcc077acd67e66fa22d837db11p@chr17:70016724..70016733, -
2.55e-98FFCP PHASE2:Hg19::chr8:49585125..49585132,+#_1141a9dcc077acd67e66fa22d837db11p@chr8:49585125..49585132, +
2.55e-98FFCP PHASE2:Hg19::chr9:37327716..37327725,+#_1141a9dcc077acd67e66fa22d837db11p12@ZCCHC7

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