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{{DOID
{{DOID
|id=DOID:3151
|alt_id=
|name=skin squamous cell carcinoma
|namespace=disease_ontology
|def=
|xref=NCI:C4819;;SNOMEDCT_2010_1_31:254651007;;UMLS_CUI:C0553723
|is_a=DOID:3451
|synonym="Epidermoid skin carcinoma" EXACT [NCI2004_11_17:C4819];;"squamous cell carcinoma of skin" RELATED [];;"squamous cell carcinoma of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:254651007]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3151
|is_a=DOID:3451
|is_obsolete=
|located_in=
|located_in=
|name=skin squamous cell carcinoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="Epidermoid skin carcinoma" EXACT [NCI2004_11_17:C4819];;"squamous cell carcinoma of skin" RELATED [];;"squamous cell carcinoma of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:254651007]
|union_of=
|xref=NCI:C4819;;SNOMEDCT_2010_1_31:254651007;;UMLS_CUI:C0553723
}}
}}

Revision as of 10:34, 12 September 2014

Name:skin squamous cell carcinoma
Namespace:disease_ontology
Xrefs:
links:

NCI:C4819
SNOMEDCT_2010_1_31:254651007

UMLS_CUI:C0553723
Synonyms: "Epidermoid skin carcinoma" EXACT [NCI2004_11_17:C4819]
"squamous cell carcinoma of skin" RELATED []
"squamous cell carcinoma of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:254651007]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3451(skin carcinoma)



Children


is a:DOID:3149 (keratoacanthoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3151 (skin squamous cell carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.55e-98FFCP PHASE1:Hg19::chr7:101448101..101448113,+#_eed4bab8adc94442c22b18b75a580625p@chr7:101448101..101448113, +
2.55e-98FFCP PHASE2:Hg19::chr7:101448277..101448287,+#_eed4bab8adc94442c22b18b75a580625p@chr7:101448277..101448287, +
2.55e-98FFCP PHASE1:Hg19::chr8:123875147..123875159,+#_eed4bab8adc94442c22b18b75a580625p26@ZHX2
2.55e-98FFCP PHASE1:Hg19::chr1:153431372..153431378,-#_eed4bab8adc94442c22b18b75a580625p4@S100A7
2.55e-98FFCP PHASE2:Hg19::chr7:101448101..101448113,+#_eed4bab8adc94442c22b18b75a580625p@chr7:101448101..101448113, +
2.55e-98FFCP PHASE1:Hg19::chr7:101448176..101448184,+#_eed4bab8adc94442c22b18b75a580625p@chr7:101448176..101448184, +
2.55e-98FFCP PHASE2:Hg19::chr8:123875147..123875159,+#_eed4bab8adc94442c22b18b75a580625p26@ZHX2
2.55e-98FFCP PHASE2:Hg19::chr1:153431372..153431378,-#_eed4bab8adc94442c22b18b75a580625p4@S100A7
2.55e-98FFCP PHASE2:Hg19::chr7:101448176..101448184,+#_eed4bab8adc94442c22b18b75a580625p@chr7:101448176..101448184, +
2.55e-98FFCP PHASE1:Hg19::chr7:101448249..101448254,+#_eed4bab8adc94442c22b18b75a580625p@chr7:101448249..101448254, +
2.55e-98FFCP PHASE2:Hg19::chr7:101448249..101448254,+#_eed4bab8adc94442c22b18b75a580625p@chr7:101448249..101448254, +
2.55e-98FFCP PHASE1:Hg19::chr7:101448277..101448287,+#_eed4bab8adc94442c22b18b75a580625p@chr7:101448277..101448287, +
1.23e-66FFCP PHASE2:Hg19::chr9:97563078..97563086,+#_ff83e814e0f0efeae7ae342d853e73e5p@chr9:97563078..97563086, +
1.23e-66FFCP PHASE1:Hg19::chr20:49047228..49047236,-#_ff83e814e0f0efeae7ae342d853e73e5p@chr20:49047228..49047236, -
1.23e-66FFCP PHASE2:Hg19::chr20:49047228..49047236,-#_ff83e814e0f0efeae7ae342d853e73e5p@chr20:49047228..49047236, -
1.23e-66FFCP PHASE1:Hg19::chr9:97563078..97563086,+#_ff83e814e0f0efeae7ae342d853e73e5p@chr9:97563078..97563086, +
2.39e-66FFCP PHASE2:Hg19::chr18:61254400..61254410,+#_47e91bdf5a7573ddf3999e3317157e11p8@SERPINB13
2.39e-66FFCP PHASE2:Hg19::chr17:19648916..19648937,-#_47e91bdf5a7573ddf3999e3317157e11p10@ALDH3A1
2.39e-66FFCP PHASE1:Hg19::chr17:19648916..19648937,-#_47e91bdf5a7573ddf3999e3317157e11p10@ALDH3A1
2.39e-66FFCP PHASE1:Hg19::chr1:76127067..76127073,-#_47e91bdf5a7573ddf3999e3317157e11p@chr1:76127067..76127073, -
2.39e-66FFCP PHASE1:Hg19::chr18:61254400..61254410,+#_47e91bdf5a7573ddf3999e3317157e11p8@SERPINB13
2.39e-66FFCP PHASE2:Hg19::chr1:76127067..76127073,-#_47e91bdf5a7573ddf3999e3317157e11p@chr1:76127067..76127073, -
4.66e-66FFCP PHASE1:Hg19::chr17:48072063..48072074,-#_fb48c7b5f19f3793d83500c3eba4cec2p5@DLX3
4.66e-66FFCP PHASE1:Hg19::chr2:178179611..178179619,-#_fb48c7b5f19f3793d83500c3eba4cec2p4@ENST00000443132
4.66e-66FFCP PHASE2:Hg19::chr19:51517875..51517889,-#_fb48c7b5f19f3793d83500c3eba4cec2p3@AK026045
4.66e-66FFCP PHASE1:Hg19::chr1:18085798..18085805,+#_fb48c7b5f19f3793d83500c3eba4cec2p@chr1:18085798..18085805, +
4.66e-66FFCP PHASE2:Hg19::chr2:178179611..178179619,-#_fb48c7b5f19f3793d83500c3eba4cec2p4@ENST00000443132
4.66e-66FFCP PHASE2:Hg19::chr1:18085798..18085805,+#_fb48c7b5f19f3793d83500c3eba4cec2p@chr1:18085798..18085805, +
4.66e-66FFCP PHASE2:Hg19::chr17:48072063..48072074,-#_fb48c7b5f19f3793d83500c3eba4cec2p5@DLX3
4.66e-66FFCP PHASE1:Hg19::chr1:10980427..10980431,-#_fb48c7b5f19f3793d83500c3eba4cec2p@chr1:10980427..10980431, -
4.66e-66FFCP PHASE1:Hg19::chr3:193809263..193809278,+#_fb48c7b5f19f3793d83500c3eba4cec2p1@ENST00000457815
4.66e-66FFCP PHASE2:Hg19::chr1:10980427..10980431,-#_fb48c7b5f19f3793d83500c3eba4cec2p@chr1:10980427..10980431, -
4.66e-66FFCP PHASE2:Hg19::chr13:28542963..28542973,-#_fb48c7b5f19f3793d83500c3eba4cec2p1@CU677005
4.66e-66FFCP PHASE2:Hg19::chr3:193809263..193809278,+#_fb48c7b5f19f3793d83500c3eba4cec2p1@ENST00000457815
4.66e-66FFCP PHASE1:Hg19::chr19:51517875..51517889,-#_fb48c7b5f19f3793d83500c3eba4cec2p3@AK026045
4.66e-66FFCP PHASE1:Hg19::chr13:28542963..28542973,-#_fb48c7b5f19f3793d83500c3eba4cec2p1@CU677005
1.46e-50FFCP PHASE1:Hg19::chr16:55600644..55600645,+#_76df07ba9ba62c06c173710979a927d5p2@CAPNS2
1.46e-50FFCP PHASE2:Hg19::chr16:55600644..55600645,+#_76df07ba9ba62c06c173710979a927d5p2@CAPNS2
1.46e-50FFCP PHASE1:Hg19::chr5:1884077..1884085,+#_76df07ba9ba62c06c173710979a927d5p1@ENST00000506335
1.46e-50FFCP PHASE2:Hg19::chr5:1884077..1884085,+#_76df07ba9ba62c06c173710979a927d5p1@ENST00000506335
1.46e-50FFCP PHASE1:Hg19::chr1:151826151..151826159,-#_76df07ba9ba62c06c173710979a927d5p3@THEM5
1.46e-50FFCP PHASE2:Hg19::chr1:151826151..151826159,-#_76df07ba9ba62c06c173710979a927d5p3@THEM5
2.42e-50FFCP PHASE2:Hg19::chr8:123875131..123875140,+#_55f309b065798029ba47f34971d64345p25@ZHX2
2.42e-50FFCP PHASE2:Hg19::chr17:77774350..77774360,+#_55f309b065798029ba47f34971d64345p@chr17:77774350..77774360, +
2.42e-50FFCP PHASE2:Hg19::chr12:130647145..130647153,+#_55f309b065798029ba47f34971d64345p3@FZD10
2.42e-50FFCP PHASE1:Hg19::chr8:120233966..120233975,+#_55f309b065798029ba47f34971d64345p@chr8:120233966..120233975, +
2.42e-50FFCP PHASE2:Hg19::chr8:120233966..120233975,+#_55f309b065798029ba47f34971d64345p@chr8:120233966..120233975, +
2.42e-50FFCP PHASE1:Hg19::chr7:101448204..101448229,+#_55f309b065798029ba47f34971d64345p@chr7:101448204..101448229, +
2.42e-50FFCP PHASE2:Hg19::chr7:101448204..101448229,+#_55f309b065798029ba47f34971d64345p@chr7:101448204..101448229, +
2.42e-50FFCP PHASE1:Hg19::chr1:86921028..86921032,+#_55f309b065798029ba47f34971d64345p@chr1:86921028..86921032, +
2.42e-50FFCP PHASE2:Hg19::chr1:86921028..86921032,+#_55f309b065798029ba47f34971d64345p@chr1:86921028..86921032, +
2.42e-50FFCP PHASE1:Hg19::chr8:123875131..123875140,+#_55f309b065798029ba47f34971d64345p25@ZHX2
2.42e-50FFCP PHASE1:Hg19::chr17:77774350..77774360,+#_55f309b065798029ba47f34971d64345p@chr17:77774350..77774360, +
2.42e-50FFCP PHASE1:Hg19::chr12:130647145..130647153,+#_55f309b065798029ba47f34971d64345p3@FZD10
3.99e-50FFCP PHASE1:Hg19::chr2:234526341..234526346,+#_336347651b7da94fe272a6411fa2289bp1@UGT1A8
3.99e-50FFCP PHASE2:Hg19::chr2:234526341..234526346,+#_336347651b7da94fe272a6411fa2289bp1@UGT1A8
6.58e-50FFCP PHASE2:Hg19::chr1:153430422..153430443,-#_61a740a3e726bcdd8453bfdd2b4c5400p3@S100A7
6.58e-50FFCP PHASE1:Hg19::chr1:118570948..118570964,-#_61a740a3e726bcdd8453bfdd2b4c5400p@chr1:118570948..118570964, -
6.58e-50FFCP PHASE1:Hg19::chr14:65406349..65406358,+#_61a740a3e726bcdd8453bfdd2b4c5400p@chr14:65406349..65406358, +
6.58e-50FFCP PHASE1:Hg19::chr10:127591699..127591713,-#_61a740a3e726bcdd8453bfdd2b4c5400p@chr10:127591699..127591713, -
6.58e-50FFCP PHASE2:Hg19::chr1:118570948..118570964,-#_61a740a3e726bcdd8453bfdd2b4c5400p@chr1:118570948..118570964, -
6.58e-50FFCP PHASE1:Hg19::chr4:152117165..152117168,+#_61a740a3e726bcdd8453bfdd2b4c5400p@chr4:152117165..152117168, +
6.58e-50FFCP PHASE2:Hg19::chr14:65406349..65406358,+#_61a740a3e726bcdd8453bfdd2b4c5400p@chr14:65406349..65406358, +
6.58e-50FFCP PHASE2:Hg19::chr4:152117165..152117168,+#_61a740a3e726bcdd8453bfdd2b4c5400p@chr4:152117165..152117168, +
6.58e-50FFCP PHASE2:Hg19::chr10:127591699..127591713,-#_61a740a3e726bcdd8453bfdd2b4c5400p@chr10:127591699..127591713, -
6.58e-50FFCP PHASE1:Hg19::chr10:54259346..54259353,+#_61a740a3e726bcdd8453bfdd2b4c5400p@chr10:54259346..54259353, +
6.58e-50FFCP PHASE1:Hg19::chr3:136885144..136885147,+#_61a740a3e726bcdd8453bfdd2b4c5400p@chr3:136885144..136885147, +
6.58e-50FFCP PHASE2:Hg19::chr3:136885144..136885147,+#_61a740a3e726bcdd8453bfdd2b4c5400p@chr3:136885144..136885147, +
6.58e-50FFCP PHASE1:Hg19::chr1:153430422..153430443,-#_61a740a3e726bcdd8453bfdd2b4c5400p3@S100A7
6.58e-50FFCP PHASE2:Hg19::chr10:54259346..54259353,+#_61a740a3e726bcdd8453bfdd2b4c5400p@chr10:54259346..54259353, +
6.62e-41FFCP PHASE1:Hg19::chr10:5567644..5567657,+#_4c45d5400f3b2f0a52acfc5091fb2a0cp@chr10:5567644..5567657, +
6.62e-41FFCP PHASE1:Hg19::chr17:39674844..39674854,+#_4c45d5400f3b2f0a52acfc5091fb2a0cp@chr17:39674844..39674854, +
6.62e-41FFCP PHASE2:Hg19::chr10:5567644..5567657,+#_4c45d5400f3b2f0a52acfc5091fb2a0cp@chr10:5567644..5567657, +
6.62e-41FFCP PHASE1:Hg19::chr1:152572708..152572714,+#_4c45d5400f3b2f0a52acfc5091fb2a0cp1@LCE3C
6.62e-41FFCP PHASE2:Hg19::chr1:152572708..152572714,+#_4c45d5400f3b2f0a52acfc5091fb2a0cp1@LCE3C
6.62e-41FFCP PHASE2:Hg19::chr17:39674844..39674854,+#_4c45d5400f3b2f0a52acfc5091fb2a0cp@chr17:39674844..39674854, +
9.91e-41FFCP PHASE2:Hg19::chr17:39675950..39675974,-#_0cc3988b604c0192fa73b1e9df2dd94ap@chr17:39675950..39675974, -
9.91e-41FFCP PHASE1:Hg19::chr8:123875175..123875188,+#_0cc3988b604c0192fa73b1e9df2dd94ap22@ZHX2
9.91e-41FFCP PHASE1:Hg19::chr3:141678730..141678768,-#_0cc3988b604c0192fa73b1e9df2dd94ap@chr3:141678730..141678768, -
9.91e-41FFCP PHASE2:Hg19::chr8:123875175..123875188,+#_0cc3988b604c0192fa73b1e9df2dd94ap22@ZHX2
9.91e-41FFCP PHASE2:Hg19::chr3:141678730..141678768,-#_0cc3988b604c0192fa73b1e9df2dd94ap@chr3:141678730..141678768, -
9.91e-41FFCP PHASE1:Hg19::chr17:39675950..39675974,-#_0cc3988b604c0192fa73b1e9df2dd94ap@chr17:39675950..39675974, -
9.91e-41FFCP PHASE1:Hg19::chr5:67829374..67829382,-#_0cc3988b604c0192fa73b1e9df2dd94ap1@ENST00000515199
9.91e-41FFCP PHASE2:Hg19::chr5:67829374..67829382,-#_0cc3988b604c0192fa73b1e9df2dd94ap1@ENST00000515199
1.48e-40FFCP PHASE1:Hg19::chr10:4951559..4951578,+#_1536b1a9e635e0e5482e3b4ac13911f0p@chr10:4951559..4951578, +
1.48e-40FFCP PHASE2:Hg19::chr10:4951559..4951578,+#_1536b1a9e635e0e5482e3b4ac13911f0p@chr10:4951559..4951578, +
1.48e-40FFCP PHASE1:Hg19::chr17:39767356..39767365,+#_1536b1a9e635e0e5482e3b4ac13911f0p@chr17:39767356..39767365, +
1.48e-40FFCP PHASE2:Hg19::chr17:39767356..39767365,+#_1536b1a9e635e0e5482e3b4ac13911f0p@chr17:39767356..39767365, +
2.21e-40FFCP PHASE2:Hg19::chr22:48134043..48134048,+#_ee1830dbb42022889b253a46d046f1e1p@chr22:48134043..48134048, +
2.21e-40FFCP PHASE1:Hg19::chr21:23573043..23573054,+#_ee1830dbb42022889b253a46d046f1e1p@chr21:23573043..23573054, +
2.21e-40FFCP PHASE2:Hg19::chr21:23573043..23573054,+#_ee1830dbb42022889b253a46d046f1e1p@chr21:23573043..23573054, +
2.21e-40FFCP PHASE1:Hg19::chr22:48134043..48134048,+#_ee1830dbb42022889b253a46d046f1e1p@chr22:48134043..48134048, +
3.3e-40FFCP PHASE1:Hg19::chr4:15937680..15937694,+#_d5ba81f0b5ddf6775429ee8f60160938p@chr4:15937680..15937694, +
3.3e-40FFCP PHASE2:Hg19::chr4:15937680..15937694,+#_d5ba81f0b5ddf6775429ee8f60160938p@chr4:15937680..15937694, +
3.3e-40FFCP PHASE1:Hg19::chr5:16492681..16492683,+#_d5ba81f0b5ddf6775429ee8f60160938p@chr5:16492681..16492683, +
3.3e-40FFCP PHASE1:Hg19::chr17:7990883..7990893,-#_d5ba81f0b5ddf6775429ee8f60160938p5@ALOX12B
3.3e-40FFCP PHASE1:Hg19::chr8:120128977..120128984,-#_d5ba81f0b5ddf6775429ee8f60160938p@chr8:120128977..120128984, -
3.3e-40FFCP PHASE2:Hg19::chr8:120128977..120128984,-#_d5ba81f0b5ddf6775429ee8f60160938p@chr8:120128977..120128984, -
3.3e-40FFCP PHASE1:Hg19::chr10:127591732..127591739,-#_d5ba81f0b5ddf6775429ee8f60160938p@chr10:127591732..127591739, -
3.3e-40FFCP PHASE2:Hg19::chr5:16492681..16492683,+#_d5ba81f0b5ddf6775429ee8f60160938p@chr5:16492681..16492683, +

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