UBERON:0000480: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:CARO_0000054-XAO_0003001-ZFA_0001512 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, CARO:MAH] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000480 | |||
|is_a=UBERON:0000061 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=anatomical group | ||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0000468 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=upper_level | ||
| | |synonym= | ||
|union_of= | |||
|xref=AAO:0010008;;AEO:0000054;;BILA:0000054;;CARO:0000054;;EHDAA2:0003054;;HAO:0000054;;TAO:0001512;;TGMA:0001846;;XAO:0003001;;ZFA:0001512 | |||
}} | }} | ||
Revision as of 10:55, 12 September 2014
| Name: | anatomical group | ||
|---|---|---|---|
| Definition: | "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, CARO:MAH] | ||
| Xrefs: |
| ||
| Alt_id: | UBERON:CARO_0000054-XAO_0003001-ZFA_0001512 | ||
| Subset: | upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000061(anatomical structure) |
|---|---|
| part_of: | UBERON:0000468(multi-cellular organism) |
Children
| is a: | UBERON:0000467 (anatomical system),UBERON:0000477 (anatomical cluster),UBERON:0001015 (musculature),UBERON:0004716 (conceptus),UBERON:0010191 (aortic system),UBERON:0018254 (skeletal musculature) |
|---|---|
| disjoint from: | UBERON:0000476 (acellular anatomical structure) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10016-101C7 (heart, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10016-101C7 (heart, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000480 (anatomical group), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
