Personal tools

UBERON:0001558: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001558
|alt_id=UBERON:FMA_45662-MA_0000435
|name=lower respiratory tract
|namespace=
|def="Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung.[FMA]" [FMA:FMA, Wikipedia:Lower_respiratory_tract]
|xref=EHDAA2:0001036;;EMAPA:16738;;FMA:45662;;http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg;;MA:0000435;;OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g;;SCTID:281488008;;VHOG:0000382
|is_a=UBERON:0000072
|synonym=
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_45662-MA_0000435
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung.[FMA]" [FMA:FMA, Wikipedia:Lower_respiratory_tract]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001558
|is_a=UBERON:0000072
|is_obsolete=
|located_in=
|located_in=
|name=lower respiratory tract
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym=
|union_of=
|xref=EHDAA2:0001036;;EMAPA:16738;;FMA:45662;;http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg;;MA:0000435;;OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g;;SCTID:281488008;;VHOG:0000382
}}
}}

Revision as of 11:04, 12 September 2014

Name:lower respiratory tract
Definition:"Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung.[FMA]" [FMA:FMA, Wikipedia:Lower_respiratory_tract]
Xrefs:
links:

EHDAA2:0001036
EMAPA:16738
FMA:45662
[1]
[2]
MA:0000435
OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g
SCTID:281488008

VHOG:0000382
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_45662-MA_0000435
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000072(segment of respiratory tract)



Children

part of:UBERON:0000170 (pair of lungs),CL:0002632 (epithelial cell of lower respiratory tract),UBERON:0004815 (lower respiratory tract epithelium),UBERON:0007196 (tracheobronchial tree)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001558 (lower respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_6e86b3582c80cc3e065071abc12a24f9p@chr6:147338308..147338339, -
1.58e-86FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_6e86b3582c80cc3e065071abc12a24f9p@chr9:110941246..110941254, +
1.58e-86FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_6e86b3582c80cc3e065071abc12a24f9p@chr2:164389604..164389615, +
1.58e-86FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_6e86b3582c80cc3e065071abc12a24f9p@chr13:115644652..115644657, -
1.58e-86FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_6e86b3582c80cc3e065071abc12a24f9p@chr5:91199084..91199088, -
1.58e-86FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_6e86b3582c80cc3e065071abc12a24f9p@chr9:110941233..110941240, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_6e86b3582c80cc3e065071abc12a24f9p3@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_6e86b3582c80cc3e065071abc12a24f9p@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_6e86b3582c80cc3e065071abc12a24f9p@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_6e86b3582c80cc3e065071abc12a24f9p@chr15:101258041..101258052, +
1.58e-86FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_6e86b3582c80cc3e065071abc12a24f9p@chr5:135420996..135421000, +
1.58e-86FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_6e86b3582c80cc3e065071abc12a24f9p@chr3:89487103..89487111, -
1.58e-86FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_6e86b3582c80cc3e065071abc12a24f9p@chr5:91198876..91198885, +
1.58e-86FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_6e86b3582c80cc3e065071abc12a24f9p@chr1:151954385..151954387, +
1.58e-86FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_6e86b3582c80cc3e065071abc12a24f9p@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_6e86b3582c80cc3e065071abc12a24f9p@chr2:60538178..60538182, -
1.58e-86FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_6e86b3582c80cc3e065071abc12a24f9p@chr5:135422125..135422141, -
1.58e-86FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_6e86b3582c80cc3e065071abc12a24f9p@chr11:100006864..100006873, +
1.58e-86FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_6e86b3582c80cc3e065071abc12a24f9p@chr2:164393992..164394012, -
1.58e-86FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_6e86b3582c80cc3e065071abc12a24f9p@chr13:115644652..115644657, -
1.58e-86FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_6e86b3582c80cc3e065071abc12a24f9p@chr6:147205603..147205610, +
1.58e-86FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_6e86b3582c80cc3e065071abc12a24f9p@chr9:110941246..110941254, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_6e86b3582c80cc3e065071abc12a24f9p2@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_6e86b3582c80cc3e065071abc12a24f9p@chr11:4165247..4165267, +
1.58e-86FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_6e86b3582c80cc3e065071abc12a24f9p@chr17:25885558..25885567, +
1.58e-86FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_6e86b3582c80cc3e065071abc12a24f9p@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_6e86b3582c80cc3e065071abc12a24f9p@chr5:91199084..91199088, -
1.58e-86FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_6e86b3582c80cc3e065071abc12a24f9p@chr1:108303887..108303893, +
1.58e-86FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_6e86b3582c80cc3e065071abc12a24f9p@chr13:115722413..115722430, +
1.58e-86FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_6e86b3582c80cc3e065071abc12a24f9p@chr4:88563185..88563192, -
1.58e-86FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_6e86b3582c80cc3e065071abc12a24f9p@chr6:147205677..147205683, +
1.58e-86FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_6e86b3582c80cc3e065071abc12a24f9p@chr2:164389604..164389615, +
1.58e-86FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_6e86b3582c80cc3e065071abc12a24f9p@chr5:135422125..135422141, -
1.58e-86FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_6e86b3582c80cc3e065071abc12a24f9p3@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_6e86b3582c80cc3e065071abc12a24f9p@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_6e86b3582c80cc3e065071abc12a24f9p@chr1:151954385..151954387, +
1.58e-86FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_6e86b3582c80cc3e065071abc12a24f9p@chr15:101258041..101258052, +
1.58e-86FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_6e86b3582c80cc3e065071abc12a24f9p@chr1:108303887..108303893, +
1.58e-86FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_6e86b3582c80cc3e065071abc12a24f9p@chr11:100006864..100006873, +
1.58e-86FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_6e86b3582c80cc3e065071abc12a24f9p@chr2:60538178..60538182, -
1.58e-86FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_6e86b3582c80cc3e065071abc12a24f9p1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_6e86b3582c80cc3e065071abc12a24f9p@chr5:135420996..135421000, +
1.58e-86FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_6e86b3582c80cc3e065071abc12a24f9p@chr6:147205603..147205610, +
1.58e-86FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_6e86b3582c80cc3e065071abc12a24f9p@chr13:115722413..115722430, +
1.58e-86FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_6e86b3582c80cc3e065071abc12a24f9p@chr12:17549752..17549763, +
1.58e-86FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_6e86b3582c80cc3e065071abc12a24f9p@chr17:25885558..25885567, +
1.58e-86FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_6e86b3582c80cc3e065071abc12a24f9p@chr2:164393992..164394012, -
1.58e-86FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_6e86b3582c80cc3e065071abc12a24f9p@chr16:32641594..32641601, +
1.58e-86FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_6e86b3582c80cc3e065071abc12a24f9p2@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_6e86b3582c80cc3e065071abc12a24f9p@chr16:32641594..32641601, +
1.58e-86FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_6e86b3582c80cc3e065071abc12a24f9p@chr9:110941233..110941240, +
1.58e-86FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_6e86b3582c80cc3e065071abc12a24f9p@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_6e86b3582c80cc3e065071abc12a24f9p@chr12:17549752..17549763, +
1.58e-86FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_6e86b3582c80cc3e065071abc12a24f9p@chr5:91198876..91198885, +
1.58e-86FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_6e86b3582c80cc3e065071abc12a24f9p1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_6e86b3582c80cc3e065071abc12a24f9p@chr3:89487103..89487111, -
1.58e-86FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_6e86b3582c80cc3e065071abc12a24f9p@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_6e86b3582c80cc3e065071abc12a24f9p@chr6:147205677..147205683, +
1.33e-65FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_d9f172989452624b429aa083732be3d0p@chr11:4164303..4164316, +
1.33e-65FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_d9f172989452624b429aa083732be3d0p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_d9f172989452624b429aa083732be3d0p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_d9f172989452624b429aa083732be3d0p3@Dtd1
1.33e-65FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_d9f172989452624b429aa083732be3d0p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_d9f172989452624b429aa083732be3d0p3@Dtd1
1.33e-65FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_d9f172989452624b429aa083732be3d0p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_d9f172989452624b429aa083732be3d0p@chr6:147212620..147212625, +
1.33e-65FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_d9f172989452624b429aa083732be3d0p@chr19:47939269..47939279, -
1.33e-65FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_d9f172989452624b429aa083732be3d0p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_d9f172989452624b429aa083732be3d0p@chr6:147212620..147212625, +
1.33e-65FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_d9f172989452624b429aa083732be3d0p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_d9f172989452624b429aa083732be3d0p@chr19:47932377..47932386, -
1.33e-65FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_d9f172989452624b429aa083732be3d0p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_d9f172989452624b429aa083732be3d0p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_d9f172989452624b429aa083732be3d0p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_d9f172989452624b429aa083732be3d0p@chr11:29642912..29642916, -
1.33e-65FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_d9f172989452624b429aa083732be3d0p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_d9f172989452624b429aa083732be3d0p@chr19:47932377..47932386, -
1.33e-65FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_d9f172989452624b429aa083732be3d0p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_d9f172989452624b429aa083732be3d0p@chr11:29642912..29642916, -
1.33e-65FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_d9f172989452624b429aa083732be3d0p@chr19:47939269..47939279, -
1.33e-65FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_d9f172989452624b429aa083732be3d0p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_d9f172989452624b429aa083732be3d0p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_d9f172989452624b429aa083732be3d0p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_d9f172989452624b429aa083732be3d0p@chr11:4164303..4164316, +
6.04e-65FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_ec733646a385f3c54af91dded59d1b00p@chr15:38385124..38385138, +
6.04e-65FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_ec733646a385f3c54af91dded59d1b00p@chr19:47928736..47928764, +
6.04e-65FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_ec733646a385f3c54af91dded59d1b00p@chr1:90456476..90456498, +
6.04e-65FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_ec733646a385f3c54af91dded59d1b00p@chr17:25888467..25888513, -
6.04e-65FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_ec733646a385f3c54af91dded59d1b00p@chr1:90456476..90456498, +
6.04e-65FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_ec733646a385f3c54af91dded59d1b00p@chr15:38385124..38385138, +
6.04e-65FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_ec733646a385f3c54af91dded59d1b00p@chr19:47928736..47928764, +
6.04e-65FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_ec733646a385f3c54af91dded59d1b00p@chr17:25888467..25888513, -
4.9e-53FFCP PHASE1:Mm9::chrX:163645025..163645028,+#_d3bcdfc3674312a3fcfa3374183fc9b4p@chrX:163645025..163645028, +
4.9e-53FFCP PHASE1:Mm9::chr11:96608968..96608974,-#_d3bcdfc3674312a3fcfa3374183fc9b4p2@ENSMUST00000166907
4.9e-53FFCP PHASE1:Mm9::chr6:147212455..147212462,-#_d3bcdfc3674312a3fcfa3374183fc9b4p6@Pthlh
4.9e-53FFCP PHASE1:Mm9::chr5:103804464..103804467,+#_d3bcdfc3674312a3fcfa3374183fc9b4p@chr5:103804464..103804467, +
4.9e-53FFCP PHASE1:Mm9::chr5:92644371..92644380,-#_d3bcdfc3674312a3fcfa3374183fc9b4p1@U90926
4.9e-53FFCP PHASE2:Mm9::chr12:8799233..8799252,+#_d3bcdfc3674312a3fcfa3374183fc9b4p@chr12:8799233..8799252, +
4.9e-53FFCP PHASE1:Mm9::chr1:152012112..152012121,-#_d3bcdfc3674312a3fcfa3374183fc9b4p6@ENSMUST00000163840
4.9e-53FFCP PHASE2:Mm9::chr17:71105425..71105430,+#_d3bcdfc3674312a3fcfa3374183fc9b4p@chr17:71105425..71105430, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001558&oldid=3273932"