UBERON:0002113: Difference between revisions
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|has_quality= | |has_quality= | ||
|id=UBERON:0002113 | |id=UBERON:0002113 | ||
|is_a=UBERON:0000489;;UBERON:0005172;;UBERON:0006554 | |is_a=UBERON:0000489 ;;UBERON:0005172 ;;UBERON:0006554 ;;UBERON:0015212 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
Revision as of 11:11, 12 September 2014
| Name: | kidney | ||
|---|---|---|---|
| Definition: | "A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney] | ||
| Xrefs: |
| ||
| Synonyms: | "kidney" EXACT [] | ||
| Alt_id: |
UBERON:FMA_7204-MA_0001683 UBERON:FMA_7205-MA_0001655 | ||
| Subset: |
major_organ organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000489(cavitated compound organ),UBERON:0005172(abdomen element),UBERON:0006554(urinary system structure),UBERON:0015212(lateral structure) |
|---|---|
| develops_from: | UBERON:0003918(kidney mesenchyme),UBERON:0005095(kidney rudiment) |
| part_of: | UBERON:0000916(abdomen),UBERON:0011143(upper urinary tract) |
Children
| is a: | UBERON:0000080 (mesonephros),UBERON:0002120 (pronephros) |
|---|---|
| derives from: | FF:0010017 (human kidney - adult sample),FF:0010045 (human kidney - fetal sample),FF:0011341 (mouse kidney- embryo E14 sample),FF:0011350 (mouse kidney- embryo E15 sample),FF:0011363 (mouse kidney- embryo E16 sample),FF:0011371 (mouse kidney- embryo E17 sample),FF:0011396 (mouse kidney- neonate N00 sample),FF:0011419 (mouse kidney- neonate N10 sample),FF:0011432 (mouse kidney- neonate N20 sample),FF:0011482 (mouse kidney- neonate N25 sample),FF:0011483 (mouse kidney- neonate N30 sample),FF:0011512 (mouse kidney- embryo E18 sample),FF:0100067 (kidney cell line sample),FF:0102733 (embryonic kidney cell line sample) |
| part of: | UBERON:0001225 (cortex of kidney),CL:0002518 (kidney epithelial cell),UBERON:0004819 (kidney epithelium),UBERON:0005215 (kidney interstitium),UBERON:0006553 (renal duct),UBERON:0007684 (uriniferous tubule),UBERON:0008987 (renal parenchyma),UBERON:0009201 (nephric duct),UBERON:0010532 (primitive nephron),CL:1000497 (kidney cell),CL:1001318 (renal interstitial pericyte) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10450-106F9 (embryonic kidney cell line: HEK293/SLAM untreated)
- 10451-106G1 (embryonic kidney cell line: HEK293/SLAM infection, 24hr)
- 10466-106H7
- 10471-106I3 (renal cell carcinoma cell line:TUHR10TKB)
- 10517-107E4
- 10518-107E5
... further results Mouse (Mus musculus)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10450-106F9 (embryonic kidney cell line: HEK293/SLAM untreated)
- 10451-106G1 (embryonic kidney cell line: HEK293/SLAM infection, 24hr)
- 10466-106H7
- 10471-106I3 (renal cell carcinoma cell line:TUHR10TKB)
- 10517-107E4
- 10518-107E5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002113 (kidney), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.73e-86 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_0d1d1ffbce91036345930ae3eff923d7 | p4@PAX2 |
| 1.73e-86 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_0d1d1ffbce91036345930ae3eff923d7 | p4@PAX2 |
| 2.28e-80 | FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_aed6e5a8abe9236bbdaeb77440fd1f55 | p6@Hoxd8 |
| 2.28e-80 | FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_aed6e5a8abe9236bbdaeb77440fd1f55 | p6@Hoxd8 |
| 3.64e-74 | FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_68095423885ab9def956c4c08e2e3d76 | p8@Hoxd8 |
| 3.64e-74 | FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_68095423885ab9def956c4c08e2e3d76 | p8@Hoxd8 |
| 5.03e-73 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_a13a87c03c8555d5b650842f124205af | p3@PAX2 |
| 5.03e-73 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_a13a87c03c8555d5b650842f124205af | p3@PAX2 |
| 3.13e-70 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_41875a9cbdf39b005511b9e36f2726f3 | p@chr2:693380..693398, + |
| 3.13e-70 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_41875a9cbdf39b005511b9e36f2726f3 | p@chr2:693380..693398, + |
| 5.44e-68 | FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_82ee867ab4803a051fd71948caa2c084 | p@chr19:44824107..44824111, - |
| 5.44e-68 | FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_82ee867ab4803a051fd71948caa2c084 | p@chr19:44824107..44824111, - |
| 6.57e-66 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_64c727392ba149f604afddda9c050169 | p7@HOXA10 |
| 6.57e-66 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_64c727392ba149f604afddda9c050169 | p7@HOXA10 |
| 2.27e-64 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_a3f6771b658f67b82e7752edf3df18bf | p2@PAX2 |
| 2.27e-64 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_a3f6771b658f67b82e7752edf3df18bf | p2@PAX2 |
| 2.61e-63 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_46acaa2ca4fa45f01030cd00726ef3c8 | p4@AIF1L |
| 2.61e-63 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_46acaa2ca4fa45f01030cd00726ef3c8 | p4@AIF1L |
| 9.07e-63 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_fbc863096a7f03eb07223051ad104e14 | p1@ENST00000418041, p1@ENST00000443104 |
| 9.07e-63 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_fbc863096a7f03eb07223051ad104e14 | p1@ENST00000418041, p1@ENST00000443104 |
| 1.43e-62 | FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_20cc53a067fb0b9f671e3c1d232d1b11 | p@chr10:3291561..3291580, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_20cc53a067fb0b9f671e3c1d232d1b11 | p@chr10:3291561..3291580, + |
| 7.58e-62 | FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_988580a7b7b097788f2299f0944be558 | p@chr19:44821149..44821161, + |
| 7.58e-62 | FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_988580a7b7b097788f2299f0944be558 | p@chr19:44899724..44899728, + |
| 7.58e-62 | FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_988580a7b7b097788f2299f0944be558 | p@chr19:44821149..44821161, + |
| 7.58e-62 | FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_988580a7b7b097788f2299f0944be558 | p@chr19:44899724..44899728, + |
| 4.78e-61 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_aa2fb09f941bde61ae5c288fe085662b | p4@MEGF11 |
| 4.78e-61 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_aa2fb09f941bde61ae5c288fe085662b | p4@MEGF11 |
| 1.07e-59 | FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_c58171c0f40cb8bbdfcfe7c8e7d4eb11 | p@chr8:107148422..107148433, + |
| 1.07e-59 | FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_c58171c0f40cb8bbdfcfe7c8e7d4eb11 | p@chr8:107148422..107148433, + |
| 6.23e-58 | FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_54e05fde1265853a156f1d35d8a2dc0c | p@chr10:50689167..50689171, + |
| 6.23e-58 | FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_54e05fde1265853a156f1d35d8a2dc0c | p@chr10:50689167..50689171, + |
| 8.0e-58 | FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_b545b2203bfc3b62e18cb0d98d2fc64b | p@chr5:24755801..24755819, + |
| 8.0e-58 | FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_b545b2203bfc3b62e18cb0d98d2fc64b | p@chr5:24755801..24755819, + |
| 1.03e-57 | FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_8405bf0fb123577b459e38914aa67a90 | p@chr19:59532611..59532623, + |
| 1.03e-57 | FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_8405bf0fb123577b459e38914aa67a90 | p@chr19:59532611..59532623, + |
| 2.2e-56 | FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_ad82d226d875eb4e1e555d5388780761 | p1@ENSMUST00000154177 |
| 2.2e-56 | FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_ad82d226d875eb4e1e555d5388780761 | p1@ENSMUST00000154177 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_a424da522af4a2324101bf0c5c1afc64 | p7@Steap2 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr19:17554168..17554181, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_a424da522af4a2324101bf0c5c1afc64 | p@chr2:74971765..74971779, - |
| 9.89e-56 | FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_a424da522af4a2324101bf0c5c1afc64 | p2@Nphs1 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_a424da522af4a2324101bf0c5c1afc64 | p2@Nphs1 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr10:50622895..50622905, + |
| 9.89e-56 | FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_a424da522af4a2324101bf0c5c1afc64 | p@chr7:47891824..47891827, - |
| 9.89e-56 | FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_a424da522af4a2324101bf0c5c1afc64 | p3@uc009jll.1 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr10:50622895..50622905, + |
| 9.89e-56 | FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr10:39251651..39251690, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_a424da522af4a2324101bf0c5c1afc64 | p@chr7:47891824..47891827, - |
| 9.89e-56 | FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_a424da522af4a2324101bf0c5c1afc64 | p3@uc009jll.1 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_a424da522af4a2324101bf0c5c1afc64 | p@chr8:118959620..118959632, - |
| 9.89e-56 | FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_a424da522af4a2324101bf0c5c1afc64 | p4@Ros1 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_a424da522af4a2324101bf0c5c1afc64 | p@chr2:74971765..74971779, - |
| 9.89e-56 | FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_a424da522af4a2324101bf0c5c1afc64 | p@chr8:118959620..118959632, - |
| 9.89e-56 | FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_a424da522af4a2324101bf0c5c1afc64 | p7@Steap2 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr10:39251651..39251690, + |
| 9.89e-56 | FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_a424da522af4a2324101bf0c5c1afc64 | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_a424da522af4a2324101bf0c5c1afc64 | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_a424da522af4a2324101bf0c5c1afc64 | p4@Ros1 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr10:79277411..79277429, + |
| 9.89e-56 | FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr10:79277411..79277429, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_a424da522af4a2324101bf0c5c1afc64 | p@chr19:17554168..17554181, + |
| 1.76e-55 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_981abce6b09acd91e99658ddc43bbe06 | p@chr18:3456189..3456200, + |
| 1.76e-55 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_981abce6b09acd91e99658ddc43bbe06 | p@chr18:3456189..3456200, + |
| 3.07e-55 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_a400374eb2889efd6445ca52d90586ea | p@chr9:119741711..119741743, - |
| 3.07e-55 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_a400374eb2889efd6445ca52d90586ea | p@chr9:119741711..119741743, - |
| 6.17e-52 | FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_f7c11af8bf9c89d6d7f19863fef6dac7 | p@chr11:75720190..75720216, - |
| 6.17e-52 | FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_f7c11af8bf9c89d6d7f19863fef6dac7 | p@chr11:75720190..75720216, - |
| 6.97e-52 | FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_a03c2022dbdb4b25b34f66669d72650f | p3@2810008M24Rik |
| 6.97e-52 | FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_a03c2022dbdb4b25b34f66669d72650f | p3@2810008M24Rik |
| 1.64e-51 | FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_56b82a729ee356a29e8ea9c1eb5bc2cb | p1@ENSMUST00000143898 |
| 1.64e-51 | FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_56b82a729ee356a29e8ea9c1eb5bc2cb | p1@ENSMUST00000143898 |
| 6.24e-51 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_63d3eca42b0ad1c52350e7febb1429f7 | p@chr7:7606139..7606151, - |
| 6.24e-51 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_63d3eca42b0ad1c52350e7febb1429f7 | p@chr7:7606139..7606151, - |
| 1.67e-50 | FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_31614da16c91ad181d476b7abc155c64 | p4@Pdzk1 |
| 1.67e-50 | FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_31614da16c91ad181d476b7abc155c64 | p4@Pdzk1 |
| 2.31e-50 | FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_7a071ea0a08e743b985b4b4ef35cdd23 | p8@Rgnef |
| 2.31e-50 | FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_7a071ea0a08e743b985b4b4ef35cdd23 | p8@Rgnef |
| 2.36e-50 | FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_32d4cc41dfa538e34da0bd9050277630 | p5@Cldn8 |
| 2.36e-50 | FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_32d4cc41dfa538e34da0bd9050277630 | p5@Cldn8 |
| 2.38e-50 | FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_1ed8bc8721e1e6431e04dea521612533 | p2@uc009jll.1 |
| 2.38e-50 | FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_1ed8bc8721e1e6431e04dea521612533 | p@chr3:154257229..154257241, - |
| 2.38e-50 | FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_1ed8bc8721e1e6431e04dea521612533 | p@chr10:12353875..12353921, - |
| 2.38e-50 | FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_1ed8bc8721e1e6431e04dea521612533 | p@chr10:12353875..12353921, - |
| 2.38e-50 | FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_1ed8bc8721e1e6431e04dea521612533 | p4@Nphs1 |
| 2.38e-50 | FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_1ed8bc8721e1e6431e04dea521612533 | p2@uc009jll.1 |
| 2.38e-50 | FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_1ed8bc8721e1e6431e04dea521612533 | p4@Nphs1 |
| 2.38e-50 | FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_1ed8bc8721e1e6431e04dea521612533 | p@chr3:154257229..154257241, - |
| 3.53e-50 | FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_b2d4bd6a4046829b291a735b9315ecfa | p@chr10:3291584..3291599, + |
| 3.53e-50 | FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_b2d4bd6a4046829b291a735b9315ecfa | p@chr10:3291584..3291599, + |
| 5.98e-50 | FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_adb5a7c66706e6a4b8ff00f26d7765d3 | p9@Ppt2 |
| 5.98e-50 | FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_adb5a7c66706e6a4b8ff00f26d7765d3 | p9@Ppt2 |
| 6.48e-50 | FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_2441805e5e8b4bfa2c386b1ac16b7099 | p5@Scp2 |
| 6.48e-50 | FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_2441805e5e8b4bfa2c386b1ac16b7099 | p5@Scp2 |
| 7.43e-50 | FFCP PHASE1:Mm9::chr2:74543235..74543246,+#_d174822e9e106c0e80825ede2ea5236e | p7@Hoxd8 |
| 7.43e-50 | FFCP PHASE2:Mm9::chr2:74543235..74543246,+#_d174822e9e106c0e80825ede2ea5236e | p7@Hoxd8 |
| 1.21e-49 | FFCP PHASE2:Mm9::chr2:74542882..74542894,+#_2fc2bec7690c7ce7863ec16ead7ef5d0 | p10@Hoxd8 |
| 1.21e-49 | FFCP PHASE1:Mm9::chr14:71030002..71030013,-#_2fc2bec7690c7ce7863ec16ead7ef5d0 | p14@Epb4.9 |
| 1.21e-49 | FFCP PHASE2:Mm9::chr16:26463232..26463247,+#_2fc2bec7690c7ce7863ec16ead7ef5d0 | p3@Cldn16 |
| 1.21e-49 | FFCP PHASE1:Mm9::chr11:75720175..75720186,-#_2fc2bec7690c7ce7863ec16ead7ef5d0 | p@chr11:75720175..75720186, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "One of either of a pair of structures lying on either side of the dorsal aorta in which fluid balance is regulated and waste is excreted out in the form of urine.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
