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{{UBERON
{{UBERON
|id=UBERON:0003215
|alt_id=
|name=alveolus
|namespace=
|def="organ part that has the form of a hollow cavity[WP]." [Wikipedia:Alveolus]
|xref=EFO:0002513;;EV:0100043;;FMA:82493;;ncithesaurus:Alveolus;;OpenCyc:Mx4rwN8NFZwpEbGdrcN5Y29ycA
|is_a=UBERON:0000064
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="organ part that has the form of a hollow cavity[WP]." [Wikipedia:Alveolus]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003215
|is_a=UBERON:0000064
|is_obsolete=
|located_in=
|located_in=
|name=alveolus
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=EFO:0002513;;EV:0100043;;FMA:82493;;ncithesaurus:Alveolus;;OpenCyc:Mx4rwN8NFZwpEbGdrcN5Y29ycA
}}
}}

Revision as of 11:23, 12 September 2014

Name:alveolus
Definition:"organ part that has the form of a hollow cavity[WP]." [Wikipedia:Alveolus]
Xrefs:
links:

EFO:0002513
EV:0100043
FMA:82493
ncithesaurus:Alveolus

OpenCyc:Mx4rwN8NFZwpEbGdrcN5Y29ycA

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part)



Children

is a:UBERON:0002299 (alveolus of lung)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003215 (alveolus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.39e-66FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p13@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p13@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p12@CPXM1
2.39e-66FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p1@SSX5
2.39e-66FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p1@SSX5
2.39e-66FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p12@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p@chr17:63511856..63511858, -
2.39e-66FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p@chr17:13574618..13574636, -
2.39e-66FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p@chr17:63511856..63511858, -
2.39e-66FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p@chr14:36536932..36536937, -
2.39e-66FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p16@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p@chr17:13574618..13574636, -
2.39e-66FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p@chr14:36536932..36536937, -
2.39e-66FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p16@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p1@ENST00000418699, p1@ENST00000432330
2.39e-66FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p14@DNMBP
2.39e-66FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p@chr3:87647430..87647437, -
2.39e-66FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_e8dc9c724e7fff4ac92af6a0b60f0ff1p12@CLEC16A
2.39e-66FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p1@ENST00000418699, p1@ENST00000432330
2.39e-66FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p14@DNMBP
2.39e-66FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p@chr3:87647430..87647437, -
2.39e-66FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_e8dc9c724e7fff4ac92af6a0b60f0ff1p12@CLEC16A
2.39e-66FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p9@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_e8dc9c724e7fff4ac92af6a0b60f0ff1p1@ENST00000430271
2.39e-66FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p13@DNMBP
2.39e-66FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p9@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_e8dc9c724e7fff4ac92af6a0b60f0ff1p1@ENST00000430271
2.39e-66FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_e8dc9c724e7fff4ac92af6a0b60f0ff1p13@DNMBP
1.53e-44FFCP PHASE2:Hg19::chr2:191696381..191696384,-#_b83960f9e720512b127edf088de3e5a3p@chr2:191696381..191696384, -
1.53e-44FFCP PHASE1:Hg19::chr2:191696381..191696384,-#_b83960f9e720512b127edf088de3e5a3p@chr2:191696381..191696384, -
4.27e-34FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_d8ad3057707328d8a0d877aac200a742p3@FMR1NB
4.27e-34FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_d8ad3057707328d8a0d877aac200a742p3@FMR1NB
4.27e-34FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_d8ad3057707328d8a0d877aac200a742p30@PDP1
4.27e-34FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_d8ad3057707328d8a0d877aac200a742p30@PDP1
4.27e-34FFCP PHASE2:Hg19::chr11:104005546..104005596,-#_d8ad3057707328d8a0d877aac200a742p@chr11:104005546..104005596, -
4.27e-34FFCP PHASE2:Hg19::chr10:101691101..101691115,-#_d8ad3057707328d8a0d877aac200a742p7@DNMBP
4.27e-34FFCP PHASE1:Hg19::chr11:104005546..104005596,-#_d8ad3057707328d8a0d877aac200a742p@chr11:104005546..104005596, -
4.27e-34FFCP PHASE2:Hg19::chr9:103785643..103785646,-#_d8ad3057707328d8a0d877aac200a742p@chr9:103785643..103785646, -
4.27e-34FFCP PHASE1:Hg19::chr10:101691101..101691115,-#_d8ad3057707328d8a0d877aac200a742p7@DNMBP
4.27e-34FFCP PHASE1:Hg19::chr9:103785643..103785646,-#_d8ad3057707328d8a0d877aac200a742p@chr9:103785643..103785646, -
4.27e-34FFCP PHASE2:Hg19::chr11:41809203..41809208,-#_d8ad3057707328d8a0d877aac200a742p@chr11:41809203..41809208, -
4.27e-34FFCP PHASE2:Hg19::chr11:106266838..106266843,+#_d8ad3057707328d8a0d877aac200a742p@chr11:106266838..106266843, +
4.27e-34FFCP PHASE1:Hg19::chr11:41809203..41809208,-#_d8ad3057707328d8a0d877aac200a742p@chr11:41809203..41809208, -
4.27e-34FFCP PHASE1:Hg19::chr11:106266838..106266843,+#_d8ad3057707328d8a0d877aac200a742p@chr11:106266838..106266843, +
4.27e-34FFCP PHASE1:Hg19::chr9:140350189..140350212,-#_d8ad3057707328d8a0d877aac200a742p30@NELF
4.27e-34FFCP PHASE2:Hg19::chr9:140350189..140350212,-#_d8ad3057707328d8a0d877aac200a742p30@NELF
4.27e-34FFCP PHASE2:Hg19::chr10:101691199..101691208,-#_d8ad3057707328d8a0d877aac200a742p11@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr8:122157279..122157284,-#_d8ad3057707328d8a0d877aac200a742p@chr8:122157279..122157284, -
4.27e-34FFCP PHASE1:Hg19::chr10:101691199..101691208,-#_d8ad3057707328d8a0d877aac200a742p11@DNMBP
4.27e-34FFCP PHASE1:Hg19::chr8:122157279..122157284,-#_d8ad3057707328d8a0d877aac200a742p@chr8:122157279..122157284, -
4.27e-34FFCP PHASE1:Hg19::chr4:169956294..169956301,-#_d8ad3057707328d8a0d877aac200a742p@chr4:169956294..169956301, -
4.27e-34FFCP PHASE2:Hg19::chr4:169956294..169956301,-#_d8ad3057707328d8a0d877aac200a742p@chr4:169956294..169956301, -
5.96e-34FFCP PHASE1:Hg19::chr15:55806847..55806854,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr15:55806847..55806854, -
5.96e-34FFCP PHASE1:Hg19::chr6:46985426..46985427,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:46985426..46985427, -
5.96e-34FFCP PHASE1:Hg19::chr4:171012844..171012850,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp12@AADAT
5.96e-34FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:45399263..45399274, +
5.96e-34FFCP PHASE1:Hg19::chr6:169691363..169691375,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:169691363..169691375, -
5.96e-34FFCP PHASE2:Hg19::chr15:55806847..55806854,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr15:55806847..55806854, -
5.96e-34FFCP PHASE1:Hg19::chr12:65386452..65386492,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr12:65386452..65386492, -
5.96e-34FFCP PHASE1:Hg19::chr9:140349856..140349859,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp36@NELF
5.96e-34FFCP PHASE2:Hg19::chr6:46985426..46985427,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:46985426..46985427, -
5.96e-34FFCP PHASE2:Hg19::chr4:171012844..171012850,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp12@AADAT
5.96e-34FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:45399263..45399274, +
5.96e-34FFCP PHASE2:Hg19::chr12:65386452..65386492,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr12:65386452..65386492, -
5.96e-34FFCP PHASE2:Hg19::chr6:169691363..169691375,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:169691363..169691375, -
5.96e-34FFCP PHASE1:Hg19::chr6:141743015..141743025,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:141743015..141743025, +
5.96e-34FFCP PHASE2:Hg19::chr9:140349856..140349859,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp36@NELF
5.96e-34FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:45399294..45399301, +
5.96e-34FFCP PHASE2:Hg19::chr6:141743015..141743025,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:141743015..141743025, +
5.96e-34FFCP PHASE1:Hg19::chr9:140349915..140349924,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp34@NELF
5.96e-34FFCP PHASE1:Hg19::chr1:93054640..93054674,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr1:93054640..93054674, -
5.96e-34FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:45405332..45405343, +
5.96e-34FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:45399294..45399301, +
5.96e-34FFCP PHASE1:Hg19::chr1:119837700..119837705,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr1:119837700..119837705, +
5.96e-34FFCP PHASE2:Hg19::chr9:140349915..140349924,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp34@NELF
5.96e-34FFCP PHASE2:Hg19::chr1:119837700..119837705,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr1:119837700..119837705, +
5.96e-34FFCP PHASE2:Hg19::chr1:93054640..93054674,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr1:93054640..93054674, -
5.96e-34FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:45405332..45405343, +
5.96e-34FFCP PHASE2:Hg19::chr17:63533845..63533851,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr17:63533845..63533851, -
5.96e-34FFCP PHASE1:Hg19::chr2:118846114..118846125,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp6@INSIG2
5.96e-34FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:45405393..45405412, +
5.96e-34FFCP PHASE1:Hg19::chr17:63533845..63533851,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr17:63533845..63533851, -
5.96e-34FFCP PHASE2:Hg19::chr2:118846114..118846125,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp6@INSIG2
5.96e-34FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:45405393..45405412, +
5.96e-34FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:45399533..45399540, +
5.96e-34FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr3:139035972..139036016, -
5.96e-34FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr3:139035972..139036016, -
5.96e-34FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:45399533..45399540, +
5.96e-34FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:45399245..45399258, +
5.96e-34FFCP PHASE1:Hg19::chr20:2795718..2795731,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp5@C20orf141
5.96e-34FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp@chr6:45399245..45399258, +
5.96e-34FFCP PHASE2:Hg19::chr20:2795718..2795731,+#_5a006ae1aab0cf3de5ba3dad7e0acb8fp5@C20orf141
1.71e-30FFCP PHASE2:Hg19::chr2:75751179..75751194,+#_443399dc6c1384a904e64e8a521c4f75p1@BC018659
1.71e-30FFCP PHASE1:Hg19::chr2:75751179..75751194,+#_443399dc6c1384a904e64e8a521c4f75p1@BC018659
1.59e-27FFCP PHASE1:Hg19::chr14:29047235..29047244,+#_eb0851974e690d5ee56b5f0c220be30dp@chr14:29047235..29047244, +
1.59e-27FFCP PHASE2:Hg19::chr14:29047235..29047244,+#_eb0851974e690d5ee56b5f0c220be30dp@chr14:29047235..29047244, +
3.56e-27FFCP PHASE2:Hg19::chr17:171082..171101,+#_5d58c94cfa47c473613bb1065224d694p@chr17:171082..171101, +
3.56e-27FFCP PHASE1:Hg19::chr17:171082..171101,+#_5d58c94cfa47c473613bb1065224d694p@chr17:171082..171101, +
7.93e-25FFCP PHASE1:Hg19::chr7:27163592..27163605,-#_3529530cedc2abd56c56c37eedadb7fap@chr7:27163592..27163605, -
7.93e-25FFCP PHASE2:Hg19::chr7:27163592..27163605,-#_3529530cedc2abd56c56c37eedadb7fap@chr7:27163592..27163605, -

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