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{{UBERON
{{UBERON
|id=UBERON:0003860
|alt_id=
|name=hindlimb mesenchyme
|namespace=
|def="A mesenchyme that is part of a hindlimb [Obol]." [OBOL:automatic]
|xref=VHOG:0001074
|is_a=UBERON:0009749
|synonym="hind limb mesenchyme" EXACT [OBOL:automatic];;"inferior member mesenchyme" EXACT [OBOL:automatic];;"lower extremity mesenchyme" EXACT [OBOL:automatic];;"mesenchyme of hind limb" EXACT [OBOL:automatic];;"mesenchyme of hindlimb" EXACT [OBOL:automatic];;"mesenchyme of inferior member" EXACT [OBOL:automatic];;"mesenchyme of lower extremity" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A mesenchyme that is part of a hindlimb [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003860
|is_a=UBERON:0009749
|is_obsolete=
|located_in=
|located_in=
|name=hindlimb mesenchyme
|namespace=
|obo_creation_date=
|part_of=UBERON:0002103
|part_of=UBERON:0002103
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="hind limb mesenchyme" EXACT [OBOL:automatic];;"inferior member mesenchyme" EXACT [OBOL:automatic];;"lower extremity mesenchyme" EXACT [OBOL:automatic];;"mesenchyme of hind limb" EXACT [OBOL:automatic];;"mesenchyme of hindlimb" EXACT [OBOL:automatic];;"mesenchyme of inferior member" EXACT [OBOL:automatic];;"mesenchyme of lower extremity" EXACT [OBOL:automatic]
|union_of=
|xref=VHOG:0001074
}}
}}

Revision as of 11:25, 12 September 2014

Name:hindlimb mesenchyme
Definition:"A mesenchyme that is part of a hindlimb [Obol]." [OBOL:automatic]
Xrefs:
links:
VHOG:0001074
Synonyms: "hind limb mesenchyme" EXACT [OBOL:automatic]
"inferior member mesenchyme" EXACT [OBOL:automatic]
"lower extremity mesenchyme" EXACT [OBOL:automatic]
"mesenchyme of hind limb" EXACT [OBOL:automatic]
"mesenchyme of hindlimb" EXACT [OBOL:automatic]
"mesenchyme of inferior member" EXACT [OBOL:automatic]
"mesenchyme of lower extremity" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0009749(limb mesenchyme)
part_of:UBERON:0002103(hindlimb)



Children

is a:UBERON:0003321 (mesenchyme of knee),UBERON:0005254 (upper leg mesenchyme),UBERON:0010886 (hindlimb bone pre-cartilage condensation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003860 (hindlimb mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_d9f190c437e183a803680567bc1ad602p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_d9f190c437e183a803680567bc1ad602p26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_1a5b0731d68fc321c5a9398d00114350p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_1a5b0731d68fc321c5a9398d00114350p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_1a5b0731d68fc321c5a9398d00114350p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_1a5b0731d68fc321c5a9398d00114350p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_1a5b0731d68fc321c5a9398d00114350p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_1a5b0731d68fc321c5a9398d00114350p@chr9:21934585..21934591, -
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_58b366c4e2580ac5ecee860921f9f133p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_58b366c4e2580ac5ecee860921f9f133p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_d5ecdc2f572b267ad2c9988c9a14b172p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_d5ecdc2f572b267ad2c9988c9a14b172p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_687344803550c04473a7e83a5b09e1eep@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_687344803550c04473a7e83a5b09e1eep@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_687344803550c04473a7e83a5b09e1eep@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_687344803550c04473a7e83a5b09e1eep@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_687344803550c04473a7e83a5b09e1eep@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_687344803550c04473a7e83a5b09e1eep@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_687344803550c04473a7e83a5b09e1eep@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_687344803550c04473a7e83a5b09e1eep@chr1:174140324..174140335, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_3c0a6cd36f7c07a6b52b7beb4a033a59p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_3c0a6cd36f7c07a6b52b7beb4a033a59p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_55404d572ce8641763f3177541c19ba2p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_55404d572ce8641763f3177541c19ba2p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_696c3149b47e90f28e3a708afbdffd58p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_696c3149b47e90f28e3a708afbdffd58p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_4dec551650bb9de67d5edc7ea5d9f304p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_4dec551650bb9de67d5edc7ea5d9f304p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_813621936717e6d12fe740d37b32f357p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_813621936717e6d12fe740d37b32f357p5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_75d6b2bd8621a8b205fba85d0066e756p2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_75d6b2bd8621a8b205fba85d0066e756p2@uc009mdq.1
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_a65ce1a3f88417493b5707d5b3044b37p3@Mmp9
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_a65ce1a3f88417493b5707d5b3044b37p3@Mmp9
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_b43459ca802e0e499137badf874c88edp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_b43459ca802e0e499137badf874c88edp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_b43459ca802e0e499137badf874c88edp2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_b43459ca802e0e499137badf874c88edp@chr1:166815111..166815121, -
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_bcc7fc837cbb06ec902338b730c05f11p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_bcc7fc837cbb06ec902338b730c05f11p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_bcc7fc837cbb06ec902338b730c05f11p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_bcc7fc837cbb06ec902338b730c05f11p4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_f1b25145738b02cc9efa1ae75aa2f69fp6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_f1b25145738b02cc9efa1ae75aa2f69fp6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_339339fd3dffe49fb3daa35a9d102c59p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_339339fd3dffe49fb3daa35a9d102c59p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_339339fd3dffe49fb3daa35a9d102c59p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_339339fd3dffe49fb3daa35a9d102c59p@chr8:126415826..126415839, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_a55931d9d3240a6f2b412a29db98bff9p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_a55931d9d3240a6f2b412a29db98bff9p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_559060f94d05aae04da268942c0b7c0ep@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_559060f94d05aae04da268942c0b7c0ep@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_559060f94d05aae04da268942c0b7c0ep@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_559060f94d05aae04da268942c0b7c0ep@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_79a3faddbf17ec48799db0611a7e79b2p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_79a3faddbf17ec48799db0611a7e79b2p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_6980edac7558cca31fe1e8ec441cdfe1p2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_6980edac7558cca31fe1e8ec441cdfe1p2@Myoz3
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_0dbbd055250c6ac38386a447cbbb29dap2@Myh4
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_0dbbd055250c6ac38386a447cbbb29dap2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_72518fabca3680900dc5f17c9acd6fd0p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_72518fabca3680900dc5f17c9acd6fd0p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_4ab20ce0192f5bb9ac5d76268ff8eb0ep@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_4ab20ce0192f5bb9ac5d76268ff8eb0ep@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_4ab20ce0192f5bb9ac5d76268ff8eb0ep1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_4ab20ce0192f5bb9ac5d76268ff8eb0ep1@Msmp
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_77be406b09c2352ce38784e2f8a2d573p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_77be406b09c2352ce38784e2f8a2d573p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_77be406b09c2352ce38784e2f8a2d573p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_77be406b09c2352ce38784e2f8a2d573p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_09d8aa259ca2e1b81c44656fd5dff6dcp@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_09d8aa259ca2e1b81c44656fd5dff6dcp@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_8b744744880ebe259970d937640a7da9p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_8b744744880ebe259970d937640a7da9p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_db7ca7ce0871a4ab7de099375459f618p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_db7ca7ce0871a4ab7de099375459f618p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_f2cfdaa2f9b05f984d5298f569e14c4fp1@Siglec15
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_f2cfdaa2f9b05f984d5298f569e14c4fp1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_c413843ea50a306566bb916391cefd5ap6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_c413843ea50a306566bb916391cefd5ap6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_3828364657ff73b01d2d909698083a5ep7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_3828364657ff73b01d2d909698083a5ep7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_60a2d1a1c6cdb089ac6c41fda6691d8cp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_60a2d1a1c6cdb089ac6c41fda6691d8cp@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_60a2d1a1c6cdb089ac6c41fda6691d8cp@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_60a2d1a1c6cdb089ac6c41fda6691d8cp@chr7:133600635..133600663, +
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_db8013070df795206300cc06055eba5ap4@Sgca
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_db8013070df795206300cc06055eba5ap4@Sgca
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_a338e3f525612683ba5e0b9c6e6cbb61p1@Mepe
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_a338e3f525612683ba5e0b9c6e6cbb61p1@Mepe
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_761e359f5de3fe3295458fad64e44e47p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_761e359f5de3fe3295458fad64e44e47p2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_761e359f5de3fe3295458fad64e44e47p@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_761e359f5de3fe3295458fad64e44e47p2@Tm4sf19
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_3773e9b2b37d73ac00fa3a92489014cap5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_3773e9b2b37d73ac00fa3a92489014cap5@Col11a2
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_3773e9b2b37d73ac00fa3a92489014cap@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_3773e9b2b37d73ac00fa3a92489014cap@chr15:97806574..97806585, -
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_f15c406c34bf8b68ba7f05b1756390dfp@chr2:180890942..180890956, -
1.36e-25FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_f15c406c34bf8b68ba7f05b1756390dfp@chr2:180890942..180890956, -

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