Personal tools

UBERON:0003975: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003975
|alt_id=
|name=internal female genitalia
|namespace=
|def="the internal feminine genital organs, including the ovaries, uterine tubes, uterus, uterine cervix, and vagina." [MP:0009209]
|xref=BTO:0003099;;FMA:45654;;SCTID:303518005
|is_a=UBERON:0003134;;UBERON:0004175
|synonym="female internal genitalia" EXACT [FMA:45654];;"internal female genital organ" EXACT [BTO:0003099];;"internal genitalia of female reproductive system" EXACT [OBOL:automatic];;"organa genitalia feminina interna" RELATED [BTO:0003099]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the internal feminine genital organs, including the ovaries, uterine tubes, uterus, uterine cervix, and vagina." [MP:0009209]
|subset=organ_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003975
|is_a=UBERON:0003134 ;;UBERON:0004175
|is_obsolete=
|located_in=
|located_in=
|name=internal female genitalia
|namespace=
|obo_creation_date=
|part_of=UBERON:0000474
|part_of=UBERON:0000474
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim
|preceded_by=
|synonym="female internal genitalia" EXACT [FMA:45654];;"internal female genital organ" EXACT [BTO:0003099];;"internal genitalia of female reproductive system" EXACT [OBOL:automatic];;"organa genitalia feminina interna" RELATED [BTO:0003099]
|union_of=
|xref=BTO:0003099;;FMA:45654;;SCTID:303518005
}}
}}

Revision as of 11:26, 12 September 2014

Name:internal female genitalia
Definition:"the internal feminine genital organs, including the ovaries, uterine tubes, uterus, uterine cervix, and vagina." [MP:0009209]
Xrefs:
links:

BTO:0003099
FMA:45654

SCTID:303518005
Synonyms: "female internal genitalia" EXACT [FMA:45654]
"internal female genital organ" EXACT [BTO:0003099]
"internal genitalia of female reproductive system" EXACT [OBOL:automatic]
"organa genitalia feminina interna" RELATED [BTO:0003099]
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003134(female reproductive organ),UBERON:0004175(internal genitalia)
part_of:UBERON:0000474(female reproductive system)



Children

is a:UBERON:0006834 (uterus or analog)
part of:UBERON:0000996 (vagina)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003975 (internal female genitalia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.88e-55FFCP PHASE1:Mm9::chr4:35105498..35105509,-#_770b8621e0ec236584b56a0428134704p@chr4:35105498..35105509, -
8.88e-55FFCP PHASE2:Mm9::chr4:35105498..35105509,-#_770b8621e0ec236584b56a0428134704p@chr4:35105498..35105509, -
1.64e-52FFCP PHASE2:Mm9::chr10:115614273..115614299,+#_0d29bc3c775b78acc948bc5c81ca9f25p17@Ptprr
1.64e-52FFCP PHASE1:Mm9::chr14:56857569..56857584,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr14:56857569..56857584, -
1.64e-52FFCP PHASE2:Mm9::chr16:92596391..92596400,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr16:92596391..92596400, -
1.64e-52FFCP PHASE2:Mm9::chr9:40297312..40297323,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr9:40297312..40297323, -
1.64e-52FFCP PHASE2:Mm9::chr13:61036176..61036186,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr13:61036176..61036186, -
1.64e-52FFCP PHASE1:Mm9::chr9:40297346..40297350,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr9:40297346..40297350, -
1.64e-52FFCP PHASE1:Mm9::chr2:166407469..166407519,-#_0d29bc3c775b78acc948bc5c81ca9f25p4@Prex1
1.64e-52FFCP PHASE1:Mm9::chr12:8339007..8339020,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr12:8339007..8339020, +
1.64e-52FFCP PHASE2:Mm9::chr7:150952861..150952867,-#_0d29bc3c775b78acc948bc5c81ca9f25p4@Mrgprg
1.64e-52FFCP PHASE2:Mm9::chr14:14765101..14765107,+#_0d29bc3c775b78acc948bc5c81ca9f25p1@ENSMUST00000159275, p1@uc007sgd.1
1.64e-52FFCP PHASE2:Mm9::chr16:20316875..20316878,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr16:20316875..20316878, -
1.64e-52FFCP PHASE1:Mm9::chr2:124475078..124475084,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr2:124475078..124475084, +
1.64e-52FFCP PHASE2:Mm9::chr10:21130385..21130393,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr10:21130385..21130393, -
1.64e-52FFCP PHASE1:Mm9::chr17:29601992..29602002,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr17:29601992..29602002, +
1.64e-52FFCP PHASE2:Mm9::chr4:140462693..140462700,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr4:140462693..140462700, -
1.64e-52FFCP PHASE2:Mm9::chr2:131681357..131681366,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr2:131681357..131681366, -
1.64e-52FFCP PHASE1:Mm9::chr6:121306916..121306921,+#_0d29bc3c775b78acc948bc5c81ca9f25p12@Slc6a12
1.64e-52FFCP PHASE1:Mm9::chr14:14765101..14765107,+#_0d29bc3c775b78acc948bc5c81ca9f25p1@ENSMUST00000159275, p1@uc007sgd.1
1.64e-52FFCP PHASE1:Mm9::chr6:97777247..97777258,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr6:97777247..97777258, +
1.64e-52FFCP PHASE1:Mm9::chr4:140462693..140462700,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr4:140462693..140462700, -
1.64e-52FFCP PHASE2:Mm9::chr17:29601992..29602002,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr17:29601992..29602002, +
1.64e-52FFCP PHASE2:Mm9::chr2:131685562..131685563,-#_0d29bc3c775b78acc948bc5c81ca9f25p2@Erv3
1.64e-52FFCP PHASE1:Mm9::chrX:51027816..51027821,+#_0d29bc3c775b78acc948bc5c81ca9f25p2@4930502E18Rik
1.64e-52FFCP PHASE2:Mm9::chr5:112904886..112904895,-#_0d29bc3c775b78acc948bc5c81ca9f25p6@Sez6l
1.64e-52FFCP PHASE1:Mm9::chr7:150952861..150952867,-#_0d29bc3c775b78acc948bc5c81ca9f25p4@Mrgprg
1.64e-52FFCP PHASE2:Mm9::chr9:40297334..40297345,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr9:40297334..40297345, -
1.64e-52FFCP PHASE1:Mm9::chr16:20316875..20316878,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr16:20316875..20316878, -
1.64e-52FFCP PHASE2:Mm9::chr6:48855132..48855142,+#_0d29bc3c775b78acc948bc5c81ca9f25p11@Abp1
1.64e-52FFCP PHASE1:Mm9::chr6:48854959..48854972,+#_0d29bc3c775b78acc948bc5c81ca9f25p6@Abp1
1.64e-52FFCP PHASE1:Mm9::chr12:8339024..8339034,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr12:8339024..8339034, +
1.64e-52FFCP PHASE2:Mm9::chr7:150952890..150952901,-#_0d29bc3c775b78acc948bc5c81ca9f25p2@Mrgprg
1.64e-52FFCP PHASE2:Mm9::chr2:131681543..131681554,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr2:131681543..131681554, -
1.64e-52FFCP PHASE1:Mm9::chr2:169512387..169512392,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr2:169512387..169512392, -
1.64e-52FFCP PHASE1:Mm9::chr9:40297262..40297271,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr9:40297262..40297271, -
1.64e-52FFCP PHASE1:Mm9::chr2:131680870..131680891,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr2:131680870..131680891, -
1.64e-52FFCP PHASE2:Mm9::chr5:112905373..112905419,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr5:112905373..112905419, +
1.64e-52FFCP PHASE2:Mm9::chr6:97777247..97777258,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr6:97777247..97777258, +
1.64e-52FFCP PHASE2:Mm9::chrX:51027816..51027821,+#_0d29bc3c775b78acc948bc5c81ca9f25p2@4930502E18Rik
1.64e-52FFCP PHASE1:Mm9::chr7:150952890..150952901,-#_0d29bc3c775b78acc948bc5c81ca9f25p2@Mrgprg
1.64e-52FFCP PHASE2:Mm9::chr9:40297346..40297350,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr9:40297346..40297350, -
1.64e-52FFCP PHASE1:Mm9::chr5:112904886..112904895,-#_0d29bc3c775b78acc948bc5c81ca9f25p6@Sez6l
1.64e-52FFCP PHASE2:Mm9::chr14:56857569..56857584,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr14:56857569..56857584, -
1.64e-52FFCP PHASE1:Mm9::chr13:27434787..27434799,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr13:27434787..27434799, -
1.64e-52FFCP PHASE2:Mm9::chr6:121306916..121306921,+#_0d29bc3c775b78acc948bc5c81ca9f25p12@Slc6a12
1.64e-52FFCP PHASE2:Mm9::chr7:150952911..150952917,-#_0d29bc3c775b78acc948bc5c81ca9f25p3@Mrgprg
1.64e-52FFCP PHASE1:Mm9::chr10:21130385..21130393,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr10:21130385..21130393, -
1.64e-52FFCP PHASE1:Mm9::chr7:129057811..129057817,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr7:129057811..129057817, +
1.64e-52FFCP PHASE2:Mm9::chr2:131680870..131680891,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr2:131680870..131680891, -
1.64e-52FFCP PHASE2:Mm9::chr2:124475078..124475084,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr2:124475078..124475084, +
1.64e-52FFCP PHASE2:Mm9::chr6:48854959..48854972,+#_0d29bc3c775b78acc948bc5c81ca9f25p6@Abp1
1.64e-52FFCP PHASE1:Mm9::chr9:40297312..40297323,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr9:40297312..40297323, -
1.64e-52FFCP PHASE1:Mm9::chr2:131681104..131681114,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr2:131681104..131681114, +
1.64e-52FFCP PHASE1:Mm9::chr10:115614018..115614024,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr10:115614018..115614024, -
1.64e-52FFCP PHASE1:Mm9::chr13:61036161..61036172,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr13:61036161..61036172, -
1.64e-52FFCP PHASE2:Mm9::chr7:129057811..129057817,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr7:129057811..129057817, +
1.64e-52FFCP PHASE1:Mm9::chr7:150952911..150952917,-#_0d29bc3c775b78acc948bc5c81ca9f25p3@Mrgprg
1.64e-52FFCP PHASE1:Mm9::chr5:112905373..112905419,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr5:112905373..112905419, +
1.64e-52FFCP PHASE2:Mm9::chr13:27437553..27437554,+#_0d29bc3c775b78acc948bc5c81ca9f25p3@Prl8a2
1.64e-52FFCP PHASE2:Mm9::chr2:169512387..169512392,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr2:169512387..169512392, -
1.64e-52FFCP PHASE1:Mm9::chr6:48855132..48855142,+#_0d29bc3c775b78acc948bc5c81ca9f25p11@Abp1
1.64e-52FFCP PHASE1:Mm9::chr6:121306890..121306895,+#_0d29bc3c775b78acc948bc5c81ca9f25p11@Slc6a12
1.64e-52FFCP PHASE1:Mm9::chr2:131681357..131681366,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr2:131681357..131681366, -
1.64e-52FFCP PHASE2:Mm9::chr12:8339007..8339020,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr12:8339007..8339020, +
1.64e-52FFCP PHASE2:Mm9::chr10:115614018..115614024,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr10:115614018..115614024, -
1.64e-52FFCP PHASE1:Mm9::chr11:46564064..46564079,+#_0d29bc3c775b78acc948bc5c81ca9f25p2@Havcr1
1.64e-52FFCP PHASE2:Mm9::chr2:131681104..131681114,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr2:131681104..131681114, +
1.64e-52FFCP PHASE2:Mm9::chr9:40297262..40297271,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr9:40297262..40297271, -
1.64e-52FFCP PHASE1:Mm9::chr16:92596391..92596400,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr16:92596391..92596400, -
1.64e-52FFCP PHASE1:Mm9::chr2:131685562..131685563,-#_0d29bc3c775b78acc948bc5c81ca9f25p2@Erv3
1.64e-52FFCP PHASE2:Mm9::chr13:61036161..61036172,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr13:61036161..61036172, -
1.64e-52FFCP PHASE2:Mm9::chr13:27434787..27434799,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr13:27434787..27434799, -
1.64e-52FFCP PHASE1:Mm9::chr9:40297334..40297345,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr9:40297334..40297345, -
1.64e-52FFCP PHASE2:Mm9::chr6:121306890..121306895,+#_0d29bc3c775b78acc948bc5c81ca9f25p11@Slc6a12
1.64e-52FFCP PHASE1:Mm9::chr10:115614273..115614299,+#_0d29bc3c775b78acc948bc5c81ca9f25p17@Ptprr
1.64e-52FFCP PHASE2:Mm9::chr2:166407469..166407519,-#_0d29bc3c775b78acc948bc5c81ca9f25p4@Prex1
1.64e-52FFCP PHASE1:Mm9::chr13:61036176..61036186,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr13:61036176..61036186, -
1.64e-52FFCP PHASE2:Mm9::chr11:46564064..46564079,+#_0d29bc3c775b78acc948bc5c81ca9f25p2@Havcr1
1.64e-52FFCP PHASE1:Mm9::chr13:27437553..27437554,+#_0d29bc3c775b78acc948bc5c81ca9f25p3@Prl8a2
1.64e-52FFCP PHASE1:Mm9::chr2:131681543..131681554,-#_0d29bc3c775b78acc948bc5c81ca9f25p@chr2:131681543..131681554, -
1.64e-52FFCP PHASE2:Mm9::chr12:8339024..8339034,+#_0d29bc3c775b78acc948bc5c81ca9f25p@chr12:8339024..8339034, +
3.83e-49FFCP PHASE1:Mm9::chr6:97777273..97777296,+#_5d718256161a7a5891090a0242aa0ab6p@chr6:97777273..97777296, +
3.83e-49FFCP PHASE2:Mm9::chr6:97777273..97777296,+#_5d718256161a7a5891090a0242aa0ab6p@chr6:97777273..97777296, +
4.8e-49FFCP PHASE2:Mm9::chr9:8900490..8900502,+#_ed8710026df5196fce6f14cc07004bbbp4@Pgr
4.8e-49FFCP PHASE1:Mm9::chr9:8900490..8900502,+#_ed8710026df5196fce6f14cc07004bbbp4@Pgr
8.33e-47FFCP PHASE2:Mm9::chr10:97030695..97030725,+#_6e0e48b2b4de4454a52901046cbb1cd8p@chr10:97030695..97030725, +
8.33e-47FFCP PHASE1:Mm9::chr10:97030695..97030725,+#_6e0e48b2b4de4454a52901046cbb1cd8p@chr10:97030695..97030725, +
1.86e-44FFCP PHASE2:Mm9::chr10:120813509..120813534,+#_689e7f478d24a3d74373bd358e097207p@chr10:120813509..120813534, +
1.86e-44FFCP PHASE1:Mm9::chr10:120813509..120813534,+#_689e7f478d24a3d74373bd358e097207p@chr10:120813509..120813534, +
5.82e-44FFCP PHASE1:Hg19::chr22:44708774..44708788,-#_0112ea55266ecba9d4f87122f42b3a52p3@KIAA1644
5.82e-44FFCP PHASE2:Hg19::chr22:44708774..44708788,-#_0112ea55266ecba9d4f87122f42b3a52p3@KIAA1644
9.17e-41FFCP PHASE2:Mm9::chr14:56853487..56853492,-#_99d324a3c02765c65641a20c8cb0432ap1@Gzmc, p2@Gzmf
9.17e-41FFCP PHASE1:Mm9::chr14:56853487..56853492,-#_99d324a3c02765c65641a20c8cb0432ap1@Gzmc, p2@Gzmf
1.16e-40FFCP PHASE2:Mm9::chr9:8900563..8900574,+#_48aa253b2d7f0bff32af1c41c842825ap5@Pgr
1.16e-40FFCP PHASE1:Mm9::chr9:8900563..8900574,+#_48aa253b2d7f0bff32af1c41c842825ap5@Pgr
1.28e-40FFCP PHASE1:Mm9::chr9:8899828..8899855,+#_0756df442731ac70e9c3e8e72a688986p3@Pgr
1.28e-40FFCP PHASE2:Mm9::chr9:8899828..8899855,+#_0756df442731ac70e9c3e8e72a688986p3@Pgr
1.54e-40FFCP PHASE1:Mm9::chr9:8900409..8900425,+#_bf83e3ae280c62b9eacadf8b45ac3ba7p2@Pgr
1.54e-40FFCP PHASE2:Mm9::chr9:8900409..8900425,+#_bf83e3ae280c62b9eacadf8b45ac3ba7p2@Pgr

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003975&oldid=3274288"