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{{UBERON
{{UBERON
|id=UBERON:0004815
|alt_id=
|name=lower respiratory tract epithelium
|namespace=
|def="An epithelium that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
|xref=MA:0001481
|is_a=UBERON:0004802
|synonym="epithelial tissue of lower respiratory tract" EXACT [OBOL:automatic];;"epithelium of lower respiratory tract" EXACT [OBOL:automatic];;"lower respiratory tract epithelial tissue" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelium that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004815
|is_a=UBERON:0004802
|is_obsolete=
|located_in=
|located_in=
|name=lower respiratory tract epithelium
|namespace=
|obo_creation_date=
|part_of=UBERON:0001558
|part_of=UBERON:0001558
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="epithelial tissue of lower respiratory tract" EXACT [OBOL:automatic];;"epithelium of lower respiratory tract" EXACT [OBOL:automatic];;"lower respiratory tract epithelial tissue" EXACT [OBOL:automatic]
|union_of=
|xref=MA:0001481
}}
}}

Revision as of 11:32, 12 September 2014

Name:lower respiratory tract epithelium
Definition:"An epithelium that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0001481
Synonyms: "epithelial tissue of lower respiratory tract" EXACT [OBOL:automatic]
"epithelium of lower respiratory tract" EXACT [OBOL:automatic]
"lower respiratory tract epithelial tissue" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004802(respiratory tract epithelium)
part_of:UBERON:0001558(lower respiratory tract)



Children

is a:UBERON:0000115 (lung epithelium),UBERON:0002031 (epithelium of bronchus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004815 (lower respiratory tract epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.71e-84FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_573bd993da986877914f93c488773d4bp@chr3:189632708..189632721, -
1.71e-84FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_573bd993da986877914f93c488773d4bp@chr3:189632708..189632721, -
2.4e-66FFCP PHASE1:Hg19::chr1:209823455..209823467,-#_ef183a1c44d2e14f91b27d164d3fa279p@chr1:209823455..209823467, -
2.4e-66FFCP PHASE2:Hg19::chr1:209823455..209823467,-#_ef183a1c44d2e14f91b27d164d3fa279p@chr1:209823455..209823467, -
3.13e-50FFCP PHASE2:Hg19::chr1:95088552..95088567,+#_430825e3eec9366cca8ba7e8e72e2e65p@chr1:95088552..95088567, +
3.13e-50FFCP PHASE1:Hg19::chr1:95088552..95088567,+#_430825e3eec9366cca8ba7e8e72e2e65p@chr1:95088552..95088567, +
1.03e-46FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_33b8f433cecddeb83901f4d032087985p@chr1:3591362..3591369, -
1.03e-46FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_33b8f433cecddeb83901f4d032087985p@chr1:3591362..3591369, -
5.0e-45FFCP PHASE2:Hg19::chr2:113830230..113830233,-#_e621ce44b012d2b358bc7b9ad9514510p@chr2:113830230..113830233, -
5.0e-45FFCP PHASE1:Hg19::chr2:113830230..113830233,-#_e621ce44b012d2b358bc7b9ad9514510p@chr2:113830230..113830233, -
1.92e-43FFCP PHASE2:Hg19::chr10:73679250..73679255,-#_eea354103f482d267176768678fbe606p@chr10:73679250..73679255, -
1.92e-43FFCP PHASE1:Hg19::chr10:73679250..73679255,-#_eea354103f482d267176768678fbe606p@chr10:73679250..73679255, -
7.6e-41FFCP PHASE2:Hg19::chr1:9953308..9953320,-#_66345f06eeff3533c33ba81920245cf7p9@CTNNBIP1
7.6e-41FFCP PHASE1:Hg19::chr1:9953308..9953320,-#_66345f06eeff3533c33ba81920245cf7p9@CTNNBIP1
1.49e-38FFCP PHASE1:Hg19::chr17:48611912..48611919,+#_95307278a377a4b7bcee29e147fe97e3p7@EPN3
1.49e-38FFCP PHASE2:Hg19::chr17:48611912..48611919,+#_95307278a377a4b7bcee29e147fe97e3p7@EPN3
1.62e-38FFCP PHASE1:Hg19::chr1:95089255..95089279,-#_d9cb2a9485c1978e9386bdc3d19acacap1@ENST00000435559
1.62e-38FFCP PHASE2:Hg19::chr1:95089255..95089279,-#_d9cb2a9485c1978e9386bdc3d19acacap1@ENST00000435559
1.8e-38FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_9c0828c473c381b8a9a066f1a063508cp@chr7:135018332..135018336, +
1.8e-38FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_9c0828c473c381b8a9a066f1a063508cp@chr7:135018332..135018336, +
3.06e-38FFCP PHASE2:Hg19::chr17:48611940..48611947,+#_a66bd034d7cac1b389b22f1f870eaad4p5@EPN3
3.06e-38FFCP PHASE1:Hg19::chr17:48611940..48611947,+#_a66bd034d7cac1b389b22f1f870eaad4p5@EPN3
5.76e-38FFCP PHASE2:Hg19::chr2:74211227..74211238,+#_06b9a32c89aedee6aeaa2877012998ddp@chr2:74211227..74211238, +
5.76e-38FFCP PHASE1:Hg19::chr2:74211227..74211238,+#_06b9a32c89aedee6aeaa2877012998ddp@chr2:74211227..74211238, +
2.35e-36FFCP PHASE1:Hg19::chr17:38179639..38179652,-#_6b6d1c8facf516d2d2e2ba53ca90d9abp7@MED24
2.35e-36FFCP PHASE2:Hg19::chr17:38179639..38179652,-#_6b6d1c8facf516d2d2e2ba53ca90d9abp7@MED24
2.53e-35FFCP PHASE1:Hg19::chr20:14248741..14248745,-#_08a7dda7462f464762331f63806916d1p@chr20:14248741..14248745, -
2.53e-35FFCP PHASE2:Hg19::chr20:14248741..14248745,-#_08a7dda7462f464762331f63806916d1p@chr20:14248741..14248745, -
1.96e-34FFCP PHASE2:Hg19::chr17:38652393..38652403,-#_f6818f78feab4c1fb156850984c160bbp16@TNS4
1.96e-34FFCP PHASE1:Hg19::chr17:38652393..38652403,-#_f6818f78feab4c1fb156850984c160bbp16@TNS4
2.75e-34FFCP PHASE1:Hg19::chr1:153540420..153540455,+#_b7d630aa18fdfee0f0f3c644153b02fap@chr1:153540420..153540455, +
2.75e-34FFCP PHASE2:Hg19::chr1:153540420..153540455,+#_b7d630aa18fdfee0f0f3c644153b02fap@chr1:153540420..153540455, +
3.07e-34FFCP PHASE2:Hg19::chr12:52844247..52844256,-#_5ce53ad9f4be87e2801d093a37c60777p@chr12:52844247..52844256, -
3.07e-34FFCP PHASE1:Hg19::chr12:52844247..52844256,-#_5ce53ad9f4be87e2801d093a37c60777p@chr12:52844247..52844256, -
5.51e-34FFCP PHASE2:Hg19::chr11:94427497..94427507,-#_d67363130bf94f0a791a1aa013aa4a31p@chr11:94427497..94427507, -
5.51e-34FFCP PHASE1:Hg19::chr11:94427497..94427507,-#_d67363130bf94f0a791a1aa013aa4a31p@chr11:94427497..94427507, -
5.96e-34FFCP PHASE1:Hg19::chr1:27181551..27181558,-#_cc02ebb8482f471a428a9ae0d813c275p@chr1:27181551..27181558, -
5.96e-34FFCP PHASE2:Hg19::chr1:27181551..27181558,-#_cc02ebb8482f471a428a9ae0d813c275p@chr1:27181551..27181558, -
6.76e-34FFCP PHASE1:Hg19::chr1:183133608..183133625,-#_6ce68a85036ed2079b1ca079faad5abcp@chr1:183133608..183133625, -
6.76e-34FFCP PHASE2:Hg19::chr1:183133608..183133625,-#_6ce68a85036ed2079b1ca079faad5abcp@chr1:183133608..183133625, -
1.27e-33FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_a97b843e2d8f156758b853b892b42db4p@chr3:190252374..190252383, -
1.27e-33FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_a97b843e2d8f156758b853b892b42db4p@chr3:190252374..190252383, -
1.5e-33FFCP PHASE1:Hg19::chr8:29414184..29414190,+#_bdd0d84535be5d32cbe908c2ff276837p@chr8:29414184..29414190, +
1.5e-33FFCP PHASE2:Hg19::chr8:29414184..29414190,+#_bdd0d84535be5d32cbe908c2ff276837p@chr8:29414184..29414190, +
6.66e-33FFCP PHASE2:Hg19::chr14:67879076..67879080,+#_790d5bd0d0889a41dadfb61550789a4bp@chr14:67879076..67879080, +
6.66e-33FFCP PHASE1:Hg19::chr14:67879076..67879080,+#_790d5bd0d0889a41dadfb61550789a4bp@chr14:67879076..67879080, +
1.14e-32FFCP PHASE1:Hg19::chr1:209807970..209807983,-#_e3a8235b57add855685d1715767cffd3p@chr1:209807970..209807983, -
1.14e-32FFCP PHASE2:Hg19::chr1:209807970..209807983,-#_e3a8235b57add855685d1715767cffd3p@chr1:209807970..209807983, -
2.68e-32FFCP PHASE2:Hg19::chr6:83075367..83075383,-#_f4f4c67c8d1ed1b37524fa29d7dfec9ap@chr6:83075367..83075383, -
2.68e-32FFCP PHASE1:Hg19::chr6:83075367..83075383,-#_f4f4c67c8d1ed1b37524fa29d7dfec9ap@chr6:83075367..83075383, -
2.95e-31FFCP PHASE1:Hg19::chr4:15937715..15937733,-#_16159742f0847505706e495e7716e18ep@chr4:15937715..15937733, -
2.95e-31FFCP PHASE2:Hg19::chr4:15937715..15937733,-#_16159742f0847505706e495e7716e18ep@chr4:15937715..15937733, -
6.66e-31FFCP PHASE2:Hg19::chr9:26747081..26747110,+#_39aeb7675bcae5058454b009d442dc29p@chr9:26747081..26747110, +
6.66e-31FFCP PHASE1:Hg19::chr9:26747081..26747110,+#_39aeb7675bcae5058454b009d442dc29p@chr9:26747081..26747110, +
1.0e-30FFCP PHASE2:Hg19::chr11:120008883..120008884,-#_beb63da6bd87cfbb49c9f9145a747dd7p16@TRIM29
1.0e-30FFCP PHASE1:Hg19::chr11:120008883..120008884,-#_beb63da6bd87cfbb49c9f9145a747dd7p16@TRIM29
1.09e-30FFCP PHASE2:Hg19::chr13:61507880..61507904,-#_36136bb008254e1fe83531ae165f6d9ap@chr13:61507880..61507904, -
1.09e-30FFCP PHASE1:Hg19::chr13:61507880..61507904,-#_36136bb008254e1fe83531ae165f6d9ap@chr13:61507880..61507904, -
1.47e-30FFCP PHASE2:Hg19::chr1:152475755..152475761,+#_c77c1aa2aa0bf4e6bfb79ba698dacf80p@chr1:152475755..152475761, +
1.47e-30FFCP PHASE1:Hg19::chr1:152475755..152475761,+#_c77c1aa2aa0bf4e6bfb79ba698dacf80p@chr1:152475755..152475761, +
1.66e-30FFCP PHASE2:Hg19::chr17:39777017..39777027,+#_b87665c8a75d4c193f15887730da401bp@chr17:39777017..39777027, +
1.66e-30FFCP PHASE1:Hg19::chr17:39777017..39777027,+#_b87665c8a75d4c193f15887730da401bp@chr17:39777017..39777027, +
1.71e-30FFCP PHASE1:Hg19::chr4:82554167..82554171,+#_5f7b02f52b07d262498d57054b97ffb3p@chr4:82554167..82554171, +
1.71e-30FFCP PHASE2:Hg19::chr4:82554167..82554171,+#_5f7b02f52b07d262498d57054b97ffb3p@chr4:82554167..82554171, +
2.24e-30FFCP PHASE1:Hg19::chr1:209825932..209825936,-#_d56bd0e0a2b99350632bd95cec61b0a8p10@LAMB3
2.24e-30FFCP PHASE2:Hg19::chr1:209825932..209825936,-#_d56bd0e0a2b99350632bd95cec61b0a8p10@LAMB3
3.1e-30FFCP PHASE1:Hg19::chr15:76443020..76443024,-#_ce34d35b84a47a9f57e45ee535810969p@chr15:76443020..76443024, -
3.1e-30FFCP PHASE2:Hg19::chr15:76443020..76443024,-#_ce34d35b84a47a9f57e45ee535810969p@chr15:76443020..76443024, -
3.11e-30FFCP PHASE1:Hg19::chr17:39780624..39780631,-#_d6d91d5b25d2c9748d54c88c5469253cp8@KRT17
3.11e-30FFCP PHASE2:Hg19::chr17:39780624..39780631,-#_d6d91d5b25d2c9748d54c88c5469253cp8@KRT17
5.61e-30FFCP PHASE2:Hg19::chr1:156720278..156720286,+#_1e52c31ae24bacdfe72d04f7a3e97d14p15@PRCC
5.61e-30FFCP PHASE1:Hg19::chr1:156720278..156720286,+#_1e52c31ae24bacdfe72d04f7a3e97d14p15@PRCC
8.74e-30FFCP PHASE1:Hg19::chr14:94426721..94426726,+#_db23e99118ca50525a68f15914aa7829p@chr14:94426721..94426726, +
8.74e-30FFCP PHASE2:Hg19::chr14:94426721..94426726,+#_db23e99118ca50525a68f15914aa7829p@chr14:94426721..94426726, +
1.34e-29FFCP PHASE1:Hg19::chr12:52913881..52913889,+#_fe3cab2be3a29f90e223b578a858c733p@chr12:52913881..52913889, +
1.34e-29FFCP PHASE2:Hg19::chr12:52913881..52913889,+#_fe3cab2be3a29f90e223b578a858c733p@chr12:52913881..52913889, +
1.63e-29FFCP PHASE1:Hg19::chr17:73719483..73719489,-#_b1110e16685b1b488b8ff8a2b26f38afp@chr17:73719483..73719489, -
1.63e-29FFCP PHASE2:Hg19::chr17:73719483..73719489,-#_b1110e16685b1b488b8ff8a2b26f38afp@chr17:73719483..73719489, -
1.98e-29FFCP PHASE1:Hg19::chr1:209827520..209827532,-#_ecc243f118a6c8540085404f5151e84ap@chr1:209827520..209827532, -
1.98e-29FFCP PHASE2:Hg19::chr1:209827520..209827532,-#_ecc243f118a6c8540085404f5151e84ap@chr1:209827520..209827532, -
2.64e-29FFCP PHASE2:Hg19::chr12:56332022..56332030,+#_6a8d86672bd062373eeb8f12c1f06804p17@DGKA
2.64e-29FFCP PHASE1:Hg19::chr12:56332022..56332030,+#_6a8d86672bd062373eeb8f12c1f06804p17@DGKA
3.27e-28FFCP PHASE1:Hg19::chr17:38657781..38657786,-#_478dcef6724c7e1d44007e9d73578293p15@TNS4
3.27e-28FFCP PHASE2:Hg19::chr17:38657781..38657786,-#_478dcef6724c7e1d44007e9d73578293p15@TNS4
4.32e-28FFCP PHASE1:Hg19::chr1:55436540..55436544,-#_01b75dd814a8a0297d369b33f943fa17p@chr1:55436540..55436544, -
4.32e-28FFCP PHASE2:Hg19::chr1:55436540..55436544,-#_01b75dd814a8a0297d369b33f943fa17p@chr1:55436540..55436544, -
6.24e-28FFCP PHASE1:Hg19::chr1:153534013..153534025,+#_04832319c4051075baf1d78f5459bddap@chr1:153534013..153534025, +
6.24e-28FFCP PHASE2:Hg19::chr1:153534013..153534025,+#_04832319c4051075baf1d78f5459bddap@chr1:153534013..153534025, +
8.22e-28FFCP PHASE2:Hg19::chr17:39768786..39768828,-#_91f90588bc06d3456e6a36322bbb0f59p2@KRT16
8.22e-28FFCP PHASE1:Hg19::chr17:39768786..39768828,-#_91f90588bc06d3456e6a36322bbb0f59p2@KRT16
1.22e-27FFCP PHASE2:Hg19::chr1:153587360..153587377,-#_bb22a2cb508d9009d431f2f6b1e1e1a8p@chr1:153587360..153587377, -
1.22e-27FFCP PHASE2:Hg19::chr1:44446555..44446566,+#_bb22a2cb508d9009d431f2f6b1e1e1a8p16@B4GALT2
1.22e-27FFCP PHASE2:Hg19::chr19:48101913..48101916,-#_bb22a2cb508d9009d431f2f6b1e1e1a8p@chr19:48101913..48101916, -
1.22e-27FFCP PHASE1:Hg19::chr2:70581573..70581577,-#_bb22a2cb508d9009d431f2f6b1e1e1a8p@chr2:70581573..70581577, -
1.22e-27FFCP PHASE2:Hg19::chr2:70581573..70581577,-#_bb22a2cb508d9009d431f2f6b1e1e1a8p@chr2:70581573..70581577, -
1.22e-27FFCP PHASE1:Hg19::chr1:153587360..153587377,-#_bb22a2cb508d9009d431f2f6b1e1e1a8p@chr1:153587360..153587377, -
1.22e-27FFCP PHASE1:Hg19::chr1:44446555..44446566,+#_bb22a2cb508d9009d431f2f6b1e1e1a8p16@B4GALT2
1.22e-27FFCP PHASE1:Hg19::chr19:48101913..48101916,-#_bb22a2cb508d9009d431f2f6b1e1e1a8p@chr19:48101913..48101916, -
1.39e-27FFCP PHASE1:Hg19::chr1:46647115..46647118,-#_da0653beb08d2876eb726a398611accfp@chr1:46647115..46647118, -
1.39e-27FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_da0653beb08d2876eb726a398611accfp@chr2:20402306..20402318, -

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