Personal tools

UBERON:0005085: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005085
|alt_id=
|name=ectodermal placode
|namespace=
|def="An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]" [GO:0060788]
|xref=
|is_a=UBERON:0001048
|synonym=
|comment=Homology: With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates. Editor notes: consder adding placodal ectoderm as a distinct class? Also place placodal ectoderm as develops_from ectoderm
|comment=Homology: With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates. Editor notes: consder adding placodal ectoderm as a distinct class? Also place placodal ectoderm as develops_from ectoderm
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]" [GO:0060788]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005085
|is_a=UBERON:0001048
|is_obsolete=
|located_in=
|located_in=
|name=ectodermal placode
|namespace=
|obo_creation_date=
|part_of=UBERON:0000924
|part_of=UBERON:0000924
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 11:33, 12 September 2014

Name:ectodermal placode
Definition:"An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]" [GO:0060788]
Comments:Homology: With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates. Editor notes: consder adding placodal ectoderm as a distinct class? Also place placodal ectoderm as develops_from ectoderm

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001048(primordium)
part_of:UBERON:0000924(ectoderm)



Children

is a:UBERON:0002546 (cranial placode),UBERON:0011814 (non-neurogenic ectodermal placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005085 (ectodermal placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.21e-60FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_319474fd79d06e4a21a03269347f2259p8@Osbp2
5.21e-60FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_319474fd79d06e4a21a03269347f2259p@chr17:31817987..31818013, +
5.21e-60FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_319474fd79d06e4a21a03269347f2259p1@Mir184
5.21e-60FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_319474fd79d06e4a21a03269347f2259p@chr10:127668442..127668453, +
5.21e-60FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_319474fd79d06e4a21a03269347f2259p@chr17:31818106..31818119, +
5.21e-60FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_319474fd79d06e4a21a03269347f2259p@chr10:127668442..127668453, +
5.21e-60FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_319474fd79d06e4a21a03269347f2259p@chr3:129525389..129525400, -
5.21e-60FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_319474fd79d06e4a21a03269347f2259p4@Dct
5.21e-60FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_319474fd79d06e4a21a03269347f2259p3@Osbp2
5.21e-60FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_319474fd79d06e4a21a03269347f2259p3@Osbp2
5.21e-60FFCP PHASE2:Mm9::chr11:5876195..5876219,-#_319474fd79d06e4a21a03269347f2259p@chr11:5876195..5876219, -
5.21e-60FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_319474fd79d06e4a21a03269347f2259p5@Zfp365
5.21e-60FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_319474fd79d06e4a21a03269347f2259p1@E130218I03Rik
5.21e-60FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_319474fd79d06e4a21a03269347f2259p@chr11:77532391..77532408, -
5.21e-60FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_319474fd79d06e4a21a03269347f2259p@chr17:31818263..31818276, +
5.21e-60FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_319474fd79d06e4a21a03269347f2259p@chr17:31815126..31815139, -
5.21e-60FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_319474fd79d06e4a21a03269347f2259p@chr11:77532391..77532408, -
5.21e-60FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_319474fd79d06e4a21a03269347f2259p1@Mir184
5.21e-60FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_319474fd79d06e4a21a03269347f2259p6@Celf1
5.21e-60FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_319474fd79d06e4a21a03269347f2259p5@Zfp365
5.21e-60FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_319474fd79d06e4a21a03269347f2259p@chr3:129525389..129525400, -
5.21e-60FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_319474fd79d06e4a21a03269347f2259p@chr17:31815126..31815139, -
5.21e-60FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_319474fd79d06e4a21a03269347f2259p@chr17:31817987..31818013, +
5.21e-60FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_319474fd79d06e4a21a03269347f2259p@chr11:77532283..77532316, -
5.21e-60FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_319474fd79d06e4a21a03269347f2259p@chr17:31818106..31818119, +
5.21e-60FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_319474fd79d06e4a21a03269347f2259p4@Dct
5.21e-60FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_319474fd79d06e4a21a03269347f2259p@chr17:31818263..31818276, +
5.21e-60FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_319474fd79d06e4a21a03269347f2259p8@Osbp2
5.21e-60FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_319474fd79d06e4a21a03269347f2259p@chr11:77532283..77532316, -
5.21e-60FFCP PHASE1:Mm9::chr11:5876195..5876219,-#_319474fd79d06e4a21a03269347f2259p@chr11:5876195..5876219, -
5.21e-60FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_319474fd79d06e4a21a03269347f2259p6@Celf1
5.21e-60FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_319474fd79d06e4a21a03269347f2259p1@E130218I03Rik
5.21e-60FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_319474fd79d06e4a21a03269347f2259p@chr16:21743134..21743139, -
5.21e-60FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_319474fd79d06e4a21a03269347f2259p@chr16:21743134..21743139, -
3.12e-54FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_1fa336b024598f5e686f63499f1589a0p@chr7:64675015..64675028, +
3.12e-54FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_1fa336b024598f5e686f63499f1589a0p@chr7:64675015..64675028, +
3.12e-54FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_1fa336b024598f5e686f63499f1589a0p3@LOC100504989, p3@Timeless
3.12e-54FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_1fa336b024598f5e686f63499f1589a0p3@LOC100504989, p3@Timeless
3.6e-54FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_10d84c1da81736d7dfe79bc4851dd78ep@chr6:97891135..97891147, +
3.6e-54FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_10d84c1da81736d7dfe79bc4851dd78ep@chr6:97891135..97891147, +
3.6e-54FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_10d84c1da81736d7dfe79bc4851dd78ep6@Pax6
3.6e-54FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_10d84c1da81736d7dfe79bc4851dd78ep6@Pax6
4.15e-54FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_df2d40a560b649e4126033a7f548d404p1@4933429O19Rik
4.15e-54FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_df2d40a560b649e4126033a7f548d404p1@4933429O19Rik
1.94e-53FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_e2893feaec9dd349ee48f2e56700d837p@chr1:65147201..65147212, -
1.94e-53FFCP PHASE1:Mm9::chr14:49501519..49501530,-#_e2893feaec9dd349ee48f2e56700d837p@chr14:49501519..49501530, -
1.94e-53FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_e2893feaec9dd349ee48f2e56700d837p@chr1:38092538..38092550, +
1.94e-53FFCP PHASE1:Mm9::chr5:112690963..112690994,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112690963..112690994, +
1.94e-53FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112686483..112686494, +
1.94e-53FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_e2893feaec9dd349ee48f2e56700d837p@chr17:31816514..31816526, +
1.94e-53FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_e2893feaec9dd349ee48f2e56700d837p3@Rrh
1.94e-53FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_e2893feaec9dd349ee48f2e56700d837p1@Pdc
1.94e-53FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112692580..112692595, +
1.94e-53FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_e2893feaec9dd349ee48f2e56700d837p11@Rnf123
1.94e-53FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_e2893feaec9dd349ee48f2e56700d837p@chr1:65146997..65147021, -
1.94e-53FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_e2893feaec9dd349ee48f2e56700d837p3@Gngt2
1.94e-53FFCP PHASE1:Mm9::chr3:129525435..129525448,-#_e2893feaec9dd349ee48f2e56700d837p2@Rrh
1.94e-53FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_e2893feaec9dd349ee48f2e56700d837p@chr8:77582172..77582183, +
1.94e-53FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:113507470..113507483, -
1.94e-53FFCP PHASE1:Mm9::chr17:31818629..31818644,+#_e2893feaec9dd349ee48f2e56700d837p@chr17:31818629..31818644, +
1.94e-53FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_e2893feaec9dd349ee48f2e56700d837p@chr7:28282354..28282365, +
1.94e-53FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_e2893feaec9dd349ee48f2e56700d837p11@Rnf123
1.94e-53FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_e2893feaec9dd349ee48f2e56700d837p2@Hsd17b12
1.94e-53FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:113506006..113506025, -
1.94e-53FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_e2893feaec9dd349ee48f2e56700d837p6@Fbxo27
1.94e-53FFCP PHASE2:Mm9::chr5:112675556..112675574,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:112675556..112675574, -
1.94e-53FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_e2893feaec9dd349ee48f2e56700d837p1@Gm4792
1.94e-53FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_e2893feaec9dd349ee48f2e56700d837p5@LOC100504989, p5@Timeless
1.94e-53FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_e2893feaec9dd349ee48f2e56700d837p1@ENSMUST00000173365
1.94e-53FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_e2893feaec9dd349ee48f2e56700d837p@chr8:77582194..77582219, +
1.94e-53FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_e2893feaec9dd349ee48f2e56700d837p@chr1:65147224..65147236, -
1.94e-53FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_e2893feaec9dd349ee48f2e56700d837p@chr6:115162924..115162933, +
1.94e-53FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_e2893feaec9dd349ee48f2e56700d837p@chr17:31816584..31816600, +
1.94e-53FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112686483..112686494, +
1.94e-53FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_e2893feaec9dd349ee48f2e56700d837p3@Rrh
1.94e-53FFCP PHASE2:Mm9::chr2:93906955..93906973,-#_e2893feaec9dd349ee48f2e56700d837p2@Hsd17b12
1.94e-53FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_e2893feaec9dd349ee48f2e56700d837p@chr10:127668480..127668491, +
1.94e-53FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_e2893feaec9dd349ee48f2e56700d837p@chr8:77582194..77582219, +
1.94e-53FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:112696408..112696421, -
1.94e-53FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_e2893feaec9dd349ee48f2e56700d837p1@Impg2
1.94e-53FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_e2893feaec9dd349ee48f2e56700d837p@chr17:31816514..31816526, +
1.94e-53FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:113507470..113507483, -
1.94e-53FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:113504891..113504916, -
1.94e-53FFCP PHASE1:Mm9::chr17:31818215..31818239,-#_e2893feaec9dd349ee48f2e56700d837p@chr17:31818215..31818239, -
1.94e-53FFCP PHASE2:Mm9::chr5:112681470..112681483,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:112681470..112681483, -
1.94e-53FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_e2893feaec9dd349ee48f2e56700d837p@chr10:127668480..127668491, +
1.94e-53FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:112675556..112675574, -
1.94e-53FFCP PHASE2:Mm9::chr5:112691047..112691066,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112691047..112691066, +
1.94e-53FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_e2893feaec9dd349ee48f2e56700d837p@chr6:115162924..115162933, +
1.94e-53FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_e2893feaec9dd349ee48f2e56700d837p@chr17:31816584..31816600, +
1.94e-53FFCP PHASE2:Mm9::chr5:112690729..112690741,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112690729..112690741, +
1.94e-53FFCP PHASE1:Mm9::chr15:36655026..36655032,+#_e2893feaec9dd349ee48f2e56700d837p@chr15:36655026..36655032, +
1.94e-53FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112691047..112691066, +
1.94e-53FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:113506190..113506202, -
1.94e-53FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_e2893feaec9dd349ee48f2e56700d837p@chr5:113506190..113506202, -
1.94e-53FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_e2893feaec9dd349ee48f2e56700d837p1@Rrh
1.94e-53FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_e2893feaec9dd349ee48f2e56700d837p1@Cngb3
1.94e-53FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_e2893feaec9dd349ee48f2e56700d837p@chr5:112690729..112690741, +
1.94e-53FFCP PHASE2:Mm9::chr1:65146997..65147021,-#_e2893feaec9dd349ee48f2e56700d837p@chr1:65146997..65147021, -
1.94e-53FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_e2893feaec9dd349ee48f2e56700d837p@chr17:31817947..31817965, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005085&oldid=3274407"