UBERON:0005428: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives[ZFA]." [ZFIN:curator] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005428 | |||
|is_a=UBERON:0004121 ;;UBERON:0005291 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=vagal neural crest | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0002342 | |part_of=UBERON:0002342 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives.[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives.[TAO]" xsd:string | ||
| | |subset=vertebrate_core | ||
| | |synonym="post-otic neural crest" EXACT [ZFA:0000818] | ||
|union_of= | |||
|xref=EHDAA2:0002156;;EHDAA:669;;TAO:0000818;;VHOG:0001208;;XAO:0004191;;ZFA:0000818 | |||
}} | }} | ||
Revision as of 11:36, 12 September 2014
| Name: | vagal neural crest | ||
|---|---|---|---|
| Definition: | "Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives[ZFA]." [ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: | "post-otic neural crest" EXACT [ZFA:0000818] | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0005291(embryonic tissue) |
|---|---|
| part_of: | UBERON:0002342(neural crest) |
Children
| develops from: | UBERON:0002005 (enteric nervous system) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005428 (vagal neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:52158594..52158603,-#_89c72bd5a98e952a8fc8003a417d1e10 | p@chr6:52158594..52158603, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:52158594..52158603,-#_89c72bd5a98e952a8fc8003a417d1e10 | p@chr6:52158594..52158603, - |
| 6.04e-65 | FFCP PHASE1:Mm9::chr4:152858080..152858084,-#_8a91fcfafc727ffb1e9910d7045eb73b | p@chr4:152858080..152858084, - |
| 6.04e-65 | FFCP PHASE2:Mm9::chr4:152858080..152858084,-#_8a91fcfafc727ffb1e9910d7045eb73b | p@chr4:152858080..152858084, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr7:143239748..143239753,+#_4f87dc3010366a331a0333cf03997cc9 | p@chr7:143239748..143239753, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr7:143239748..143239753,+#_4f87dc3010366a331a0333cf03997cc9 | p@chr7:143239748..143239753, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr1:88008549..88008559,-#_66bad8e94ffc42df5e46414218393752 | p4@Htr2b |
| 1.18e-44 | FFCP PHASE1:Mm9::chr1:88008549..88008559,-#_66bad8e94ffc42df5e46414218393752 | p4@Htr2b |
| 3.27e-44 | FFCP PHASE2:Mm9::chr2:74583733..74583738,+#_a8416a0dd040e6bb56cfe13778034acb | p13@Hoxd3 |
| 3.27e-44 | FFCP PHASE1:Mm9::chr2:74583733..74583738,+#_a8416a0dd040e6bb56cfe13778034acb | p13@Hoxd3 |
| 4.58e-44 | FFCP PHASE1:Mm9::chr13:96388617..96388624,-#_275ca3b6d6739077afb437785920d1cd | p4@F2r |
| 4.58e-44 | FFCP PHASE2:Mm9::chr13:96388617..96388624,-#_275ca3b6d6739077afb437785920d1cd | p4@F2r |
| 8.97e-44 | FFCP PHASE2:Mm9::chr5:88358803..88358820,+#_6ab279c7f6069716194237f1c35d4c43 | p@chr5:88358803..88358820, + |
| 8.97e-44 | FFCP PHASE1:Mm9::chr5:88358803..88358820,+#_6ab279c7f6069716194237f1c35d4c43 | p@chr5:88358803..88358820, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr11:4397590..4397595,-#_f9d6aa92f20996e0a042e99579aff684 | p@chr11:4397590..4397595, - |
| 4.15e-39 | FFCP PHASE1:Mm9::chr11:4397590..4397595,-#_f9d6aa92f20996e0a042e99579aff684 | p@chr11:4397590..4397595, - |
| 1.17e-38 | FFCP PHASE2:Mm9::chr9:35352286..35352290,-#_8ec495b5ad566e7fba67583c7c17cbbf | p@chr9:35352286..35352290, - |
| 1.17e-38 | FFCP PHASE1:Mm9::chr9:35352286..35352290,-#_8ec495b5ad566e7fba67583c7c17cbbf | p@chr9:35352286..35352290, - |
| 1.56e-38 | FFCP PHASE2:Mm9::chr15:102928215..102928218,-#_a9188c4443a5f539153ed5c2cc7c83d4 | p@chr15:102928215..102928218, - |
| 1.56e-38 | FFCP PHASE1:Mm9::chr15:102928215..102928218,-#_a9188c4443a5f539153ed5c2cc7c83d4 | p@chr15:102928215..102928218, - |
| 3.73e-38 | FFCP PHASE2:Mm9::chr11:96164868..96164875,+#_f0f4d188f761066804abae49b6e64c9f | p5@Hoxb5 |
| 3.73e-38 | FFCP PHASE1:Mm9::chr11:96164868..96164875,+#_f0f4d188f761066804abae49b6e64c9f | p5@Hoxb5 |
| 4.98e-38 | FFCP PHASE2:Mm9::chr11:96176093..96176104,+#_4e940bad2ded93fb3c5bc88ff4a7da40 | p@chr11:96176093..96176104, + |
| 4.98e-38 | FFCP PHASE1:Mm9::chr11:96176093..96176104,+#_4e940bad2ded93fb3c5bc88ff4a7da40 | p@chr11:96176093..96176104, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr8:11952680..11952690,+#_03336e3e9352f72a4f83ec34105fc42d | p@chr8:11952680..11952690, + |
| 3.67e-34 | FFCP PHASE1:Mm9::chr8:11952680..11952690,+#_03336e3e9352f72a4f83ec34105fc42d | p@chr8:11952680..11952690, + |
| 4.74e-34 | FFCP PHASE2:Mm9::chr16:5855821..5855836,+#_218020c519a0e133bf598def34f646a5 | p@chr16:5855821..5855836, + |
| 4.74e-34 | FFCP PHASE2:Mm9::chr10:90644180..90644195,-#_218020c519a0e133bf598def34f646a5 | p@chr10:90644180..90644195, - |
| 4.74e-34 | FFCP PHASE1:Mm9::chr16:5855821..5855836,+#_218020c519a0e133bf598def34f646a5 | p@chr16:5855821..5855836, + |
| 4.74e-34 | FFCP PHASE1:Mm9::chr10:90644180..90644195,-#_218020c519a0e133bf598def34f646a5 | p@chr10:90644180..90644195, - |
| 6.12e-34 | FFCP PHASE1:Mm9::chr2:31305411..31305419,+#_75d58b906619716caa97abcb68372fa2 | p@chr2:31305411..31305419, + |
| 6.12e-34 | FFCP PHASE2:Mm9::chr2:31305411..31305419,+#_75d58b906619716caa97abcb68372fa2 | p@chr2:31305411..31305419, + |
| 1.69e-33 | FFCP PHASE2:Mm9::chr16:5855860..5855872,+#_476d24dd2355920a9240dd5fc405081b | p@chr16:5855860..5855872, + |
| 1.69e-33 | FFCP PHASE1:Mm9::chr16:5855860..5855872,+#_476d24dd2355920a9240dd5fc405081b | p@chr16:5855860..5855872, + |
| 9.86e-33 | FFCP PHASE1:Mm9::chr12:88020400..88020411,+#_6c7085c0ebd12b1879ff6b5eb3c98570 | p@chr12:88020400..88020411, + |
| 9.86e-33 | FFCP PHASE2:Mm9::chr12:88020400..88020411,+#_6c7085c0ebd12b1879ff6b5eb3c98570 | p@chr12:88020400..88020411, + |
| 1.16e-30 | FFCP PHASE1:Mm9::chr6:52158693..52158704,-#_aca926e7c508c00d4db9b40efe4f1c45 | p3@Hoxa6 |
| 1.16e-30 | FFCP PHASE2:Mm9::chr6:52158693..52158704,-#_aca926e7c508c00d4db9b40efe4f1c45 | p3@Hoxa6 |
| 4.54e-30 | FFCP PHASE2:Mm9::chr11:96168366..96168369,+#_4f25c63127e0afc7fd14d9ce18e50702 | p@chr11:96168366..96168369, + |
| 4.54e-30 | FFCP PHASE1:Mm9::chr11:96168366..96168369,+#_4f25c63127e0afc7fd14d9ce18e50702 | p@chr11:96168366..96168369, + |
| 4.54e-30 | FFCP PHASE2:Mm9::chr11:113795301..113795315,+#_4f25c63127e0afc7fd14d9ce18e50702 | p@chr11:113795301..113795315, + |
| 4.54e-30 | FFCP PHASE1:Mm9::chr11:113795301..113795315,+#_4f25c63127e0afc7fd14d9ce18e50702 | p@chr11:113795301..113795315, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr14:20570183..20570190,+#_406e42c4a907edb4a36786af1b069949 | p3@Nid2 |
| 5.61e-30 | FFCP PHASE1:Mm9::chr14:20570183..20570190,+#_406e42c4a907edb4a36786af1b069949 | p3@Nid2 |
| 5.7e-30 | FFCP PHASE1:Mm9::chr8:11782453..11782481,+#_29b7dd66fc292b9da8bb634849cec2ac | p25@Arhgef7 |
| 5.7e-30 | FFCP PHASE2:Mm9::chr8:11782453..11782481,+#_29b7dd66fc292b9da8bb634849cec2ac | p25@Arhgef7 |
| 7.14e-30 | FFCP PHASE2:Mm9::chr7:98820891..98820900,+#_5a3cea0772a738e98750b5d1597e7277 | p34@Dlg2 |
| 7.14e-30 | FFCP PHASE1:Mm9::chr7:98820891..98820900,+#_5a3cea0772a738e98750b5d1597e7277 | p34@Dlg2 |
| 1.12e-29 | FFCP PHASE1:Mm9::chr6:118116455..118116458,-#_d3b74809e2c6087195ec6464d4db340b | p@chr6:118116455..118116458, - |
| 1.12e-29 | FFCP PHASE2:Mm9::chr6:118116455..118116458,-#_d3b74809e2c6087195ec6464d4db340b | p@chr6:118116455..118116458, - |
| 1.4e-29 | FFCP PHASE1:Mm9::chr2:119624214..119624225,+#_639dc1233d29399dfb97a79c3dbed821 | p7@Tyro3 |
| 1.4e-29 | FFCP PHASE2:Mm9::chr2:119624214..119624225,+#_639dc1233d29399dfb97a79c3dbed821 | p7@Tyro3 |
| 1.54e-29 | FFCP PHASE1:Mm9::chr1:88007341..88007350,-#_dc8213fe51728d070d6cedb02fdacbbd | p7@Htr2b |
| 1.54e-29 | FFCP PHASE2:Mm9::chr5:88358878..88358890,+#_dc8213fe51728d070d6cedb02fdacbbd | p@chr5:88358878..88358890, + |
| 1.54e-29 | FFCP PHASE1:Mm9::chr5:88358878..88358890,+#_dc8213fe51728d070d6cedb02fdacbbd | p@chr5:88358878..88358890, + |
| 1.54e-29 | FFCP PHASE2:Mm9::chr1:88007341..88007350,-#_dc8213fe51728d070d6cedb02fdacbbd | p7@Htr2b |
| 2.19e-29 | FFCP PHASE2:Mm9::chr15:90848413..90848436,-#_92966c00140aac260affb926fa8e6415 | p@chr15:90848413..90848436, - |
| 2.19e-29 | FFCP PHASE1:Mm9::chr15:90848413..90848436,-#_92966c00140aac260affb926fa8e6415 | p@chr15:90848413..90848436, - |
| 3.42e-29 | FFCP PHASE1:Mm9::chr9:20777404..20777418,+#_f482764d60e839ec13c2e84edf1fbc24 | p@chr9:20777404..20777418, + |
| 3.42e-29 | FFCP PHASE2:Mm9::chr9:20777404..20777418,+#_f482764d60e839ec13c2e84edf1fbc24 | p@chr9:20777404..20777418, + |
| 7.38e-28 | FFCP PHASE2:Mm9::chr6:52134126..52134150,-#_9b71565ef4b7a8a5e2e2a0a8f100bab2 | p3@Hoxa3 |
| 7.38e-28 | FFCP PHASE1:Mm9::chr6:52134126..52134150,-#_9b71565ef4b7a8a5e2e2a0a8f100bab2 | p3@Hoxa3 |
| 9.07e-28 | FFCP PHASE2:Mm9::chr11:106874215..106874219,+#_ce433702a04463223be4f26281843a8c | p@chr11:106874215..106874219, + |
| 9.07e-28 | FFCP PHASE1:Mm9::chr11:106874215..106874219,+#_ce433702a04463223be4f26281843a8c | p@chr11:106874215..106874219, + |
| 1.11e-27 | FFCP PHASE2:Mm9::chr5:46030754..46030764,-#_c0bdeb625e091d8e26668bfbac28397c | p9@Fam184b |
| 1.11e-27 | FFCP PHASE1:Mm9::chr5:46030754..46030764,-#_c0bdeb625e091d8e26668bfbac28397c | p9@Fam184b |
| 1.37e-27 | FFCP PHASE2:Mm9::chr11:96175972..96175978,+#_595c3eb439d97647967a4d3fa21345a3 | p@chr11:96175972..96175978, + |
| 1.37e-27 | FFCP PHASE1:Mm9::chr11:96175972..96175978,+#_595c3eb439d97647967a4d3fa21345a3 | p@chr11:96175972..96175978, + |
| 2.06e-27 | FFCP PHASE2:Mm9::chr5:67486110..67486118,-#_e1f0e509839fd2bbfc2f18b19551f97a | p@chr5:67486110..67486118, - |
| 2.06e-27 | FFCP PHASE1:Mm9::chr5:67486110..67486118,-#_e1f0e509839fd2bbfc2f18b19551f97a | p@chr5:67486110..67486118, - |
| 5.7e-27 | FFCP PHASE2:Mm9::chr1:65358027..65358031,+#_69552ed19a4bdba9422d9edcaa2ddb8c | p1@Pth2r |
| 5.7e-27 | FFCP PHASE1:Mm9::chr1:65358027..65358031,+#_69552ed19a4bdba9422d9edcaa2ddb8c | p1@Pth2r |
| 8.55e-27 | FFCP PHASE1:Mm9::chr3:59108872..59108875,+#_73cdc8ce27d2d49078fd92254ac5c613 | p@chr3:59108872..59108875, + |
| 8.55e-27 | FFCP PHASE2:Mm9::chr3:59108872..59108875,+#_73cdc8ce27d2d49078fd92254ac5c613 | p@chr3:59108872..59108875, + |
| 3.49e-26 | FFCP PHASE1:Mm9::chr1:94648758..94648763,+#_bcd3fef84c885386fedb0dad9f74f929 | p@chr1:94648758..94648763, + |
| 3.49e-26 | FFCP PHASE2:Mm9::chr1:94648758..94648763,+#_bcd3fef84c885386fedb0dad9f74f929 | p@chr1:94648758..94648763, + |
| 5.19e-26 | FFCP PHASE1:Mm9::chr1:112856387..112856393,-#_18f6e94397be61627d9bca81066338a1 | p@chr1:112856387..112856393, - |
| 5.19e-26 | FFCP PHASE2:Mm9::chr1:112856387..112856393,-#_18f6e94397be61627d9bca81066338a1 | p@chr1:112856387..112856393, - |
| 1.46e-25 | FFCP PHASE1:Mm9::chr11:96164887..96164894,+#_3aebd940b641d26b46eeb5e37372a31e | p4@Hoxb5 |
| 1.46e-25 | FFCP PHASE2:Mm9::chr11:96164887..96164894,+#_3aebd940b641d26b46eeb5e37372a31e | p4@Hoxb5 |
| 4.47e-25 | FFCP PHASE2:Mm9::chr2:67492047..67492052,+#_17fef2ace03e272b17fd485ad77e27ae | p@chr2:67492047..67492052, + |
| 4.47e-25 | FFCP PHASE1:Mm9::chr2:67492047..67492052,+#_17fef2ace03e272b17fd485ad77e27ae | p@chr2:67492047..67492052, + |
| 6.49e-25 | FFCP PHASE2:Mm9::chr2:74583741..74583750,+#_1002a4387ae773569b5e224ec021c2a0 | p10@Hoxd3 |
| 6.49e-25 | FFCP PHASE1:Mm9::chr2:74583741..74583750,+#_1002a4387ae773569b5e224ec021c2a0 | p10@Hoxd3 |
| 7.81e-25 | FFCP PHASE1:Mm9::chr2:119586145..119586157,-#_9ab4a869e5ec093a9cc671974b9a9998 | p2@Ltk |
| 7.81e-25 | FFCP PHASE2:Mm9::chr2:119586145..119586157,-#_9ab4a869e5ec093a9cc671974b9a9998 | p2@Ltk |
| 1.13e-24 | FFCP PHASE2:Mm9::chr11:96165338..96165355,+#_454afc776771dc9d260d1791221d28b4 | p@chr11:96165338..96165355, + |
| 1.13e-24 | FFCP PHASE1:Mm9::chr11:96165338..96165355,+#_454afc776771dc9d260d1791221d28b4 | p@chr11:96165338..96165355, + |
| 1.63e-24 | FFCP PHASE1:Mm9::chr7:38151719..38151721,-#_1c544a645bbd8660515d869ec958159f | p@chr7:38151719..38151721, - |
| 1.63e-24 | FFCP PHASE2:Mm9::chr7:38151719..38151721,-#_1c544a645bbd8660515d869ec958159f | p@chr7:38151719..38151721, - |
| 4.9e-24 | FFCP PHASE1:Mm9::chr12:100139521..100139532,-#_b49623208d60cc7ae476d6af32680f5c | p4@Eml5 |
| 4.9e-24 | FFCP PHASE2:Mm9::chr12:100139521..100139532,-#_b49623208d60cc7ae476d6af32680f5c | p4@Eml5 |
| 5.11e-24 | FFCP PHASE1:Mm9::chr8:26610056..26610057,-#_e43fcaebd3f137838953ef9d94cd7017 | p@chr8:26610056..26610057, - |
| 5.11e-24 | FFCP PHASE2:Mm9::chr8:26610056..26610057,-#_e43fcaebd3f137838953ef9d94cd7017 | p@chr8:26610056..26610057, - |
| 6.68e-24 | FFCP PHASE2:Mm9::chr5:88358947..88358973,+#_e2c924d442f1aa3dca67f1359442fa0e | p@chr5:88358947..88358973, + |
| 6.68e-24 | FFCP PHASE1:Mm9::chr5:88358947..88358973,+#_e2c924d442f1aa3dca67f1359442fa0e | p@chr5:88358947..88358973, + |
| 1.19e-23 | FFCP PHASE2:Mm9::chr8:11913012..11913024,+#_82a7dcfa99516e31371e380cc0dc5da5 | p@chr8:11913012..11913024, + |
| 1.19e-23 | FFCP PHASE1:Mm9::chr8:11913012..11913024,+#_82a7dcfa99516e31371e380cc0dc5da5 | p@chr8:11913012..11913024, + |
| 1.21e-23 | FFCP PHASE2:Mm9::chr9:42209759..42209780,-#_b22fc76b9062a14f3441498c765ca84e | p@chr9:42209759..42209780, - |
| 1.21e-23 | FFCP PHASE1:Mm9::chr9:42209759..42209780,-#_b22fc76b9062a14f3441498c765ca84e | p@chr9:42209759..42209780, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
