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{{UBERON
{{UBERON
|id=UBERON:0005728
|alt_id=
|name=extraembryonic mesoderm
|namespace=
|def="." [http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm]
|xref=EHDAA2:0000474;;VHOG:0000616
|is_a=UBERON:0000478;;UBERON:0004120
|synonym="extra-embryonic mesoderm" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="." [http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0003081;;UBERON:0008780
|develops_from=UBERON:0003081;;UBERON:0008780
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005728
|is_a=UBERON:0004120 ;;UBERON:0005292 ;;UBERON:0007524
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=extraembryonic mesoderm
|namespace=
|obo_creation_date=
|part_of=UBERON:0016887
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="extra-embryonic mesoderm" EXACT []
|union_of=
|xref=EHDAA2:0000474;;VHOG:0000616
}}
}}

Revision as of 11:37, 12 September 2014

Name:extraembryonic mesoderm
Definition:"." [1]
Xrefs:
links:

EHDAA2:0000474

VHOG:0000616
Synonyms: "extra-embryonic mesoderm" EXACT []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005292(extraembryonic tissue),UBERON:0007524(dense mesenchyme tissue)
develops_from:UBERON:0003081(lateral plate mesoderm),UBERON:0008780(inner cell mass derived epiblast)
part_of:UBERON:0016887(entire extraembryonic component)



Children

develops from:UBERON:0007806 (connecting stalk)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005728 (extraembryonic mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.79e-79FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr7:135931480..135931486, +
5.79e-79FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr10:120921270..120921282, -
5.79e-79FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148p@chr7:135931480..135931486, +
2.16e-63FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04abp8@RAB7L1
2.16e-63FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04abp8@RAB7L1
1.1e-59FFCP PHASE1:Hg19::chr7:135735084..135735112,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135735084..135735112, +
1.1e-59FFCP PHASE1:Hg19::chr21:18180126..18180130,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18180126..18180130, -
1.1e-59FFCP PHASE2:Hg19::chr2:53245239..53245255,-#_f1700f6fa279d66bc6746540ac32fc48p@chr2:53245239..53245255, -
1.1e-59FFCP PHASE1:Hg19::chr9:74997054..74997058,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74997054..74997058, -
1.1e-59FFCP PHASE2:Hg19::chr3:180050773..180050786,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:180050773..180050786, +
1.1e-59FFCP PHASE2:Hg19::chr21:18170731..18170736,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18170731..18170736, -
1.1e-59FFCP PHASE2:Hg19::chr11:128154946..128154955,+#_f1700f6fa279d66bc6746540ac32fc48p@chr11:128154946..128154955, +
1.1e-59FFCP PHASE1:Hg19::chr2:228216642..228216661,+#_f1700f6fa279d66bc6746540ac32fc48p11@MFF
1.1e-59FFCP PHASE1:Hg19::chr22:37484406..37484413,+#_f1700f6fa279d66bc6746540ac32fc48p@chr22:37484406..37484413, +
1.1e-59FFCP PHASE2:Hg19::chr9:74986248..74986275,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74986248..74986275, -
1.1e-59FFCP PHASE1:Hg19::chr15:43323772..43323785,-#_f1700f6fa279d66bc6746540ac32fc48p@chr15:43323772..43323785, -
1.1e-59FFCP PHASE1:Hg19::chr20:38442102..38442111,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:38442102..38442111, +
1.1e-59FFCP PHASE1:Hg19::chr3:111319059..111319101,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:111319059..111319101, -
1.1e-59FFCP PHASE1:Hg19::chr1:207617923..207617929,-#_f1700f6fa279d66bc6746540ac32fc48p@chr1:207617923..207617929, -
1.1e-59FFCP PHASE2:Hg19::chr17:1985278..1985290,-#_f1700f6fa279d66bc6746540ac32fc48p@chr17:1985278..1985290, -
1.1e-59FFCP PHASE1:Hg19::chr7:17543537..17543548,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:17543537..17543548, -
1.1e-59FFCP PHASE1:Hg19::chr14:76957827..76957835,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957827..76957835, +
1.1e-59FFCP PHASE2:Hg19::chr4:167983163..167983209,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167983163..167983209, -
1.1e-59FFCP PHASE1:Hg19::chr19:49488921..49488932,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:49488921..49488932, -
1.1e-59FFCP PHASE2:Hg19::chr19:40074306..40074328,+#_f1700f6fa279d66bc6746540ac32fc48p@chr19:40074306..40074328, +
1.1e-59FFCP PHASE2:Hg19::chr10:120921395..120921406,-#_f1700f6fa279d66bc6746540ac32fc48p@chr10:120921395..120921406, -
1.1e-59FFCP PHASE1:Hg19::chr6:87324164..87324175,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:87324164..87324175, +
1.1e-59FFCP PHASE1:Hg19::chr6:149490934..149490939,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:149490934..149490939, -
1.1e-59FFCP PHASE2:Hg19::chr6:42362820..42362827,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:42362820..42362827, -
1.1e-59FFCP PHASE2:Hg19::chr4:167932279..167932291,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167932279..167932291, -
1.1e-59FFCP PHASE1:Hg19::chr2:2930946..2930963,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:2930946..2930963, +
1.1e-59FFCP PHASE2:Hg19::chr3:119281371..119281382,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:119281371..119281382, -
1.1e-59FFCP PHASE2:Hg19::chr22:37484379..37484392,+#_f1700f6fa279d66bc6746540ac32fc48p@chr22:37484379..37484392, +
1.1e-59FFCP PHASE1:Hg19::chr2:148293141..148293150,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148293141..148293150, +
1.1e-59FFCP PHASE2:Hg19::chr7:102945487..102945492,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:102945487..102945492, +
1.1e-59FFCP PHASE2:Hg19::chr3:75655787..75655802,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:75655787..75655802, -
1.1e-59FFCP PHASE2:Hg19::chr14:76017386..76017395,-#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76017386..76017395, -
1.1e-59FFCP PHASE1:Hg19::chr3:119279036..119279047,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:119279036..119279047, +
1.1e-59FFCP PHASE2:Hg19::chr21:18180062..18180079,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18180062..18180079, -
1.1e-59FFCP PHASE1:Hg19::chr5:28145264..28145272,-#_f1700f6fa279d66bc6746540ac32fc48p@chr5:28145264..28145272, -
1.1e-59FFCP PHASE2:Hg19::chr9:74996801..74996811,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74996801..74996811, -
1.1e-59FFCP PHASE2:Hg19::chr10:31996512..31996530,-#_f1700f6fa279d66bc6746540ac32fc48p5@ENST00000433770
1.1e-59FFCP PHASE1:Hg19::chr7:106363860..106363870,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106363860..106363870, -
1.1e-59FFCP PHASE2:Hg19::chr3:45926401..45926410,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:45926401..45926410, -
1.1e-59FFCP PHASE1:Hg19::chr19:53511711..53511720,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:53511711..53511720, -
1.1e-59FFCP PHASE1:Hg19::chr7:135705366..135705371,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135705366..135705371, +
1.1e-59FFCP PHASE1:Hg19::chr21:18179708..18179733,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18179708..18179733, -
1.1e-59FFCP PHASE2:Hg19::chr2:11264766..11264775,-#_f1700f6fa279d66bc6746540ac32fc48p@chr2:11264766..11264775, -
1.1e-59FFCP PHASE2:Hg19::chr19:49488905..49488920,-#_f1700f6fa279d66bc6746540ac32fc48p@chr19:49488905..49488920, -
1.1e-59FFCP PHASE1:Hg19::chr9:74995216..74995247,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74995216..74995247, -
1.1e-59FFCP PHASE2:Hg19::chr12:129054695..129054717,-#_f1700f6fa279d66bc6746540ac32fc48p@chr12:129054695..129054717, -
1.1e-59FFCP PHASE1:Hg19::chr2:228216535..228216554,+#_f1700f6fa279d66bc6746540ac32fc48p14@MFF
1.1e-59FFCP PHASE2:Hg19::chr6:138023078..138023089,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:138023078..138023089, -
1.1e-59FFCP PHASE1:Hg19::chrX:109653507..109653518,+#_f1700f6fa279d66bc6746540ac32fc48p@chrX:109653507..109653518, +
1.1e-59FFCP PHASE2:Hg19::chr3:195306434..195306439,-#_f1700f6fa279d66bc6746540ac32fc48p10@APOD
1.1e-59FFCP PHASE2:Hg19::chr20:38442102..38442111,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:38442102..38442111, +
1.1e-59FFCP PHASE1:Hg19::chr14:76957754..76957760,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957754..76957760, +
1.1e-59FFCP PHASE1:Hg19::chrX:10129292..10129306,+#_f1700f6fa279d66bc6746540ac32fc48p@chrX:10129292..10129306, +
1.1e-59FFCP PHASE1:Hg19::chr10:120924761..120924770,-#_f1700f6fa279d66bc6746540ac32fc48p10@SFXN4
1.1e-59FFCP PHASE1:Hg19::chr6:150322254..150322291,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:150322254..150322291, -
1.1e-59FFCP PHASE2:Hg19::chr4:167957459..167957470,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167957459..167957470, -
1.1e-59FFCP PHASE2:Hg19::chr21:43934923..43934932,+#_f1700f6fa279d66bc6746540ac32fc48p@chr21:43934923..43934932, +
1.1e-59FFCP PHASE1:Hg19::chr12:24889813..24889821,-#_f1700f6fa279d66bc6746540ac32fc48p@chr12:24889813..24889821, -
1.1e-59FFCP PHASE1:Hg19::chr5:77713534..77713543,+#_f1700f6fa279d66bc6746540ac32fc48p@chr5:77713534..77713543, +
1.1e-59FFCP PHASE2:Hg19::chr9:94933452..94933457,+#_f1700f6fa279d66bc6746540ac32fc48p@chr9:94933452..94933457, +
1.1e-59FFCP PHASE2:Hg19::chr2:228216642..228216661,+#_f1700f6fa279d66bc6746540ac32fc48p11@MFF
1.1e-59FFCP PHASE1:Hg19::chr6:135486487..135486491,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:135486487..135486491, +
1.1e-59FFCP PHASE1:Hg19::chr5:146717844..146717861,+#_f1700f6fa279d66bc6746540ac32fc48p@chr5:146717844..146717861, +
1.1e-59FFCP PHASE1:Hg19::chr2:74682916..74682923,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:74682916..74682923, +
1.1e-59FFCP PHASE1:Hg19::chr2:15651894..15651904,-#_f1700f6fa279d66bc6746540ac32fc48p4@NBAS
1.1e-59FFCP PHASE1:Hg19::chr4:167944606..167944610,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167944606..167944610, -
1.1e-59FFCP PHASE2:Hg19::chr2:148284480..148284484,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148284480..148284484, +
1.1e-59FFCP PHASE2:Hg19::chr14:76957782..76957792,+#_f1700f6fa279d66bc6746540ac32fc48p@chr14:76957782..76957792, +
1.1e-59FFCP PHASE2:Hg19::chr4:167791926..167791930,-#_f1700f6fa279d66bc6746540ac32fc48p@chr4:167791926..167791930, -
1.1e-59FFCP PHASE1:Hg19::chr8:59970765..59970787,-#_f1700f6fa279d66bc6746540ac32fc48p@chr8:59970765..59970787, -
1.1e-59FFCP PHASE1:Hg19::chr7:106397597..106397610,+#_f1700f6fa279d66bc6746540ac32fc48p@chr7:106397597..106397610, +
1.1e-59FFCP PHASE1:Hg19::chr6:31150998..31151005,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:31150998..31151005, -
1.1e-59FFCP PHASE1:Hg19::chr3:153038353..153038371,+#_f1700f6fa279d66bc6746540ac32fc48p@chr3:153038353..153038371, +
1.1e-59FFCP PHASE1:Hg19::chr2:148278743..148278751,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:148278743..148278751, +
1.1e-59FFCP PHASE2:Hg19::chr2:2930946..2930963,+#_f1700f6fa279d66bc6746540ac32fc48p@chr2:2930946..2930963, +
1.1e-59FFCP PHASE2:Hg19::chr1:234765062..234765067,+#_f1700f6fa279d66bc6746540ac32fc48p6@LINC00184
1.1e-59FFCP PHASE1:Hg19::chr7:135738522..135738525,-#_f1700f6fa279d66bc6746540ac32fc48p@chr7:135738522..135738525, -
1.1e-59FFCP PHASE2:Hg19::chr19:53510877..53510886,+#_f1700f6fa279d66bc6746540ac32fc48p2@uc002qao.2
1.1e-59FFCP PHASE2:Hg19::chr13:102271725..102271736,+#_f1700f6fa279d66bc6746540ac32fc48p@chr13:102271725..102271736, +
1.1e-59FFCP PHASE1:Hg19::chr9:75001932..75001956,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:75001932..75001956, -
1.1e-59FFCP PHASE2:Hg19::chr21:18178842..18178867,-#_f1700f6fa279d66bc6746540ac32fc48p@chr21:18178842..18178867, -
1.1e-59FFCP PHASE1:Hg19::chr16:86326031..86326033,+#_f1700f6fa279d66bc6746540ac32fc48p@chr16:86326031..86326033, +
1.1e-59FFCP PHASE1:Hg19::chr19:3149800..3149805,+#_f1700f6fa279d66bc6746540ac32fc48p@chr19:3149800..3149805, +
1.1e-59FFCP PHASE2:Hg19::chr9:74995205..74995211,-#_f1700f6fa279d66bc6746540ac32fc48p@chr9:74995205..74995211, -
1.1e-59FFCP PHASE1:Hg19::chr15:43323789..43323811,-#_f1700f6fa279d66bc6746540ac32fc48p@chr15:43323789..43323811, -
1.1e-59FFCP PHASE1:Hg19::chr20:38442120..38442126,+#_f1700f6fa279d66bc6746540ac32fc48p@chr20:38442120..38442126, +
1.1e-59FFCP PHASE2:Hg19::chr6:87324164..87324175,+#_f1700f6fa279d66bc6746540ac32fc48p@chr6:87324164..87324175, +
1.1e-59FFCP PHASE2:Hg19::chr5:28145264..28145272,-#_f1700f6fa279d66bc6746540ac32fc48p@chr5:28145264..28145272, -
1.1e-59FFCP PHASE1:Hg19::chr3:169775687..169775690,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:169775687..169775690, -
1.1e-59FFCP PHASE2:Hg19::chr2:45063061..45063082,-#_f1700f6fa279d66bc6746540ac32fc48p@chr2:45063061..45063082, -
1.1e-59FFCP PHASE1:Hg19::chr6:138023154..138023161,-#_f1700f6fa279d66bc6746540ac32fc48p@chr6:138023154..138023161, -
1.1e-59FFCP PHASE1:Hg19::chr5:162742836..162742845,-#_f1700f6fa279d66bc6746540ac32fc48p@chr5:162742836..162742845, -
1.1e-59FFCP PHASE1:Hg19::chr3:111331533..111331540,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:111331533..111331540, -
1.1e-59FFCP PHASE2:Hg19::chr3:157301317..157301362,-#_f1700f6fa279d66bc6746540ac32fc48p@chr3:157301317..157301362, -

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