CL:0000066: Difference between revisions
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|located_in= | |located_in= | ||
|name=epithelial cell | |name=epithelial cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:29, 12 September 2014
| Name: | epithelial cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:A.11.436] | ||
| Xrefs: |
| ||
| Synonyms: | "epitheliocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000548(animal cell) |
|---|
Children
| is a: | CL:0000068 (duct epithelial cell),CL:0000075 (columnar/cuboidal epithelial cell),CL:0000076 (squamous epithelial cell),CL:0000079 (stratified epithelial cell),CL:0000082 (epithelial cell of lung),CL:0000083 (epithelial cell of pancreas),CL:0000098 (sensory epithelial cell),CL:0000150 (glandular epithelial cell),CL:0000182 (hepatocyte),CL:0000244 (transitional epithelial cell),CL:0000666 (fenestrated cell),CL:0002076 (endo-epithelial cell),CL:0002077 (ecto-epithelial cell),CL:0002078 (meso-epithelial cell),CL:0002222 (vertebrate lens cell),CL:0002327 (mammary gland epithelial cell),CL:0002518 (kidney epithelial cell),CL:0002535 (epithelial cell of cervix),CL:0002536 (amniotic epithelial cell),CL:0002565 (iris pigment epithelial cell),CL:0002577 (placental epithelial cell),CL:0002586 (retinal pigment epithelial cell),CL:0005012 (multi-ciliated epithelial cell),CL:1000415 (epithelial cell of gall bladder) |
|---|---|
| derives from: | FF:0101120 (epithelial cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10412-106B7 (malignant trichilemmal cyst cell line:DJM-1)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10428-106D5 (anaplastic carcinoma cell line:8305C)
... further results Mouse (Mus musculus)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10412-106B7 (malignant trichilemmal cyst cell line:DJM-1)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10428-106D5 (anaplastic carcinoma cell line:8305C)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000066 (epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.35e-72 | FFCP PHASE1:Hg19::chr19:38794797..38794810,+#_4e6ded3e4b8c013f62042ce6d2ce9cd9 | p2@C19orf33 |
| 9.35e-72 | FFCP PHASE2:Hg19::chr19:38794797..38794810,+#_4e6ded3e4b8c013f62042ce6d2ce9cd9 | p2@C19orf33 |
| 4.87e-66 | FFCP PHASE2:Hg19::chr8:144815966..144815986,-#_f83836debae0e7b7ebf007f003390786 | p2@FAM83H |
| 4.87e-66 | FFCP PHASE1:Hg19::chr8:144815966..144815986,-#_f83836debae0e7b7ebf007f003390786 | p2@FAM83H |
| 4.44e-63 | FFCP PHASE2:Hg19::chr18:47376197..47376227,-#_dc4b45f9b4ec57d7eb4fab164cf0b487 | p2@MYO5B |
| 4.44e-63 | FFCP PHASE1:Hg19::chr18:47376197..47376227,-#_dc4b45f9b4ec57d7eb4fab164cf0b487 | p2@MYO5B |
| 1.05e-60 | FFCP PHASE2:Hg19::chr16:1728305..1728324,+#_74b15a328f47dc368f25c08e2f1c3c49 | p2@HN1L |
| 1.05e-60 | FFCP PHASE1:Hg19::chr16:1728305..1728324,+#_74b15a328f47dc368f25c08e2f1c3c49 | p2@HN1L |
| 3.33e-60 | FFCP PHASE1:Hg19::chr1:16482527..16482546,-#_e7ce4805f8483365662978052fc79562 | p2@EPHA2 |
| 3.33e-60 | FFCP PHASE2:Hg19::chr1:16482527..16482546,-#_e7ce4805f8483365662978052fc79562 | p2@EPHA2 |
| 4.95e-60 | FFCP PHASE2:Hg19::chr5:68710906..68710983,+#_4e73b16520adb091f3f9b5082146e1da | p1@MARVELD2 |
| 4.95e-60 | FFCP PHASE1:Hg19::chr5:68710906..68710983,+#_4e73b16520adb091f3f9b5082146e1da | p1@MARVELD2 |
| 2.28e-59 | FFCP PHASE2:Hg19::chr19:751122..751139,+#_00f5700f51d5ceb473819ba12963104a | p1@C19orf21 |
| 2.28e-59 | FFCP PHASE1:Hg19::chr19:751122..751139,+#_00f5700f51d5ceb473819ba12963104a | p1@C19orf21 |
| 2.41e-59 | FFCP PHASE1:Hg19::chr1:955448..955508,+#_f7e49d9a54ef1ee7c8f3a36df7ac1f38 | p1@AGRN |
| 2.41e-59 | FFCP PHASE2:Hg19::chr1:955448..955508,+#_f7e49d9a54ef1ee7c8f3a36df7ac1f38 | p1@AGRN |
| 4.14e-59 | FFCP PHASE2:Hg19::chr2:54784868..54784919,+#_4110e6a44f834cee3fa1eebd3a573e6c | p@chr2:54784868..54784919, + |
| 4.14e-59 | FFCP PHASE1:Hg19::chr2:54784868..54784919,+#_4110e6a44f834cee3fa1eebd3a573e6c | p@chr2:54784868..54784919, + |
| 5.64e-59 | FFCP PHASE1:Hg19::chr16:1728272..1728296,+#_a5b6da62e334961a74c477a19e2caf41 | p1@HN1L |
| 5.64e-59 | FFCP PHASE2:Hg19::chr16:1728272..1728296,+#_a5b6da62e334961a74c477a19e2caf41 | p1@HN1L |
| 8.84e-59 | FFCP PHASE2:Hg19::chr1:6479968..6479986,-#_a6404775c6d50314120b1a0a5763fbbb | p1@HES2 |
| 8.84e-59 | FFCP PHASE1:Hg19::chr1:6479968..6479986,-#_a6404775c6d50314120b1a0a5763fbbb | p1@HES2 |
| 1.35e-58 | FFCP PHASE1:Hg19::chr8:144815914..144815961,-#_73048bb8d734464ea87b06a8e9634759 | p1@FAM83H |
| 1.35e-58 | FFCP PHASE2:Hg19::chr8:144815914..144815961,-#_73048bb8d734464ea87b06a8e9634759 | p1@FAM83H |
| 7.96e-58 | FFCP PHASE2:Hg19::chr19:38794829..38794901,+#_06b08002f08f08022dd1a8b6e431a813 | p1@C19orf33 |
| 7.96e-58 | FFCP PHASE1:Hg19::chr19:38794829..38794901,+#_06b08002f08f08022dd1a8b6e431a813 | p1@C19orf33 |
| 1.93e-57 | FFCP PHASE2:Hg19::chr12:53342893..53342911,+#_9d5ed3da7726713689c80eaedd8755c3 | p1@KRT18 |
| 1.93e-57 | FFCP PHASE1:Hg19::chr12:53342893..53342911,+#_9d5ed3da7726713689c80eaedd8755c3 | p1@KRT18 |
| 2.5e-57 | FFCP PHASE1:Hg19::chr19:751104..751121,+#_fed9af0b99d62ccef444e3e477d3d4e5 | p2@C19orf21 |
| 2.5e-57 | FFCP PHASE2:Hg19::chr19:751104..751121,+#_fed9af0b99d62ccef444e3e477d3d4e5 | p2@C19orf21 |
| 7.82e-57 | FFCP PHASE2:Hg19::chr1:33207381..33207471,+#_5ebb019dbab99ea949bee3bbee1a5ec6 | p2@KIAA1522 |
| 7.82e-57 | FFCP PHASE1:Hg19::chr1:33207381..33207471,+#_5ebb019dbab99ea949bee3bbee1a5ec6 | p2@KIAA1522 |
| 2.03e-56 | FFCP PHASE2:Hg19::chr12:52585791..52585806,-#_5d8af02eb9168b9229b01a55ccfe8bfa | p1@KRT80 |
| 2.03e-56 | FFCP PHASE1:Hg19::chr12:52585791..52585806,-#_5d8af02eb9168b9229b01a55ccfe8bfa | p1@KRT80 |
| 3.8e-56 | FFCP PHASE1:Hg19::chr16:68679173..68679184,+#_571d22303402803a8bfe213bddbdd143 | p2@CDH3 |
| 3.8e-56 | FFCP PHASE2:Hg19::chr16:68679173..68679184,+#_571d22303402803a8bfe213bddbdd143 | p2@CDH3 |
| 6.8e-56 | FFCP PHASE2:Hg19::chr1:27189631..27189648,+#_15e3f6478c0a0ba6bbf09b166c648cfc | p1@SFN |
| 6.8e-56 | FFCP PHASE1:Hg19::chr1:27189631..27189648,+#_15e3f6478c0a0ba6bbf09b166c648cfc | p1@SFN |
| 4.25e-55 | FFCP PHASE2:Hg19::chr1:16482554..16482576,-#_f19e11100e6b67c090b23d5fe794835e | p1@EPHA2 |
| 4.25e-55 | FFCP PHASE1:Hg19::chr1:16482554..16482576,-#_f19e11100e6b67c090b23d5fe794835e | p1@EPHA2 |
| 8.93e-55 | FFCP PHASE2:Hg19::chr20:361391..361410,+#_172728af2ffe8c28d7538ebdfe75f627 | p2@TRIB3 |
| 8.93e-55 | FFCP PHASE1:Hg19::chr20:361391..361410,+#_172728af2ffe8c28d7538ebdfe75f627 | p2@TRIB3 |
| 1.64e-54 | FFCP PHASE2:Hg19::chr17:75277512..75277592,+#_abcc8ae8933ba1d17edb068a2b1e6fab | p2@SEPT9 |
| 1.64e-54 | FFCP PHASE1:Hg19::chr17:75277512..75277592,+#_abcc8ae8933ba1d17edb068a2b1e6fab | p2@SEPT9 |
| 1.98e-54 | FFCP PHASE1:Hg19::chr1:160990954..160990973,-#_d22b9db85cc1532e7e147e735726a8ca | p3@F11R |
| 1.98e-54 | FFCP PHASE2:Hg19::chr1:160990954..160990973,-#_d22b9db85cc1532e7e147e735726a8ca | p3@F11R |
| 4.24e-54 | FFCP PHASE2:Hg19::chr1:35246775..35246797,+#_0c616103451b23e4c413429ac475fca8 | p2@GJB3 |
| 4.24e-54 | FFCP PHASE1:Hg19::chr1:35246775..35246797,+#_0c616103451b23e4c413429ac475fca8 | p2@GJB3 |
| 6.39e-54 | FFCP PHASE2:Hg19::chr17:4843943..4843963,+#_4fa268db98f5d95cd346020b4f24f14d | p3@RNF167 |
| 6.39e-54 | FFCP PHASE1:Hg19::chr17:4843943..4843963,+#_4fa268db98f5d95cd346020b4f24f14d | p3@RNF167 |
| 6.87e-53 | FFCP PHASE2:Hg19::chr22:46933332..46933398,-#_acf4a0d8829870c459678f576af67392 | p2@CELSR1 |
| 6.87e-53 | FFCP PHASE1:Hg19::chr22:46933332..46933398,-#_acf4a0d8829870c459678f576af67392 | p2@CELSR1 |
| 1.17e-52 | FFCP PHASE1:Hg19::chr8:128306960..128306989,-#_2e95e2340481ef1667d0d6609a637973 | p@chr8:128306960..128306989, - |
| 1.17e-52 | FFCP PHASE2:Hg19::chr8:128306960..128306989,-#_2e95e2340481ef1667d0d6609a637973 | p@chr8:128306960..128306989, - |
| 1.44e-52 | FFCP PHASE2:Hg19::chr6:10415484..10415508,-#_35c3a3d69e404541ba946347202ca20c | p3@TFAP2A |
| 1.44e-52 | FFCP PHASE1:Hg19::chr6:10415484..10415508,-#_35c3a3d69e404541ba946347202ca20c | p3@TFAP2A |
| 1.83e-52 | FFCP PHASE1:Hg19::chr6:30851840..30851902,+#_43b6c92e80b2926decba16128bfb76ff | p4@DDR1 |
| 1.83e-52 | FFCP PHASE2:Hg19::chr6:30851840..30851902,+#_43b6c92e80b2926decba16128bfb76ff | p4@DDR1 |
| 1.91e-52 | FFCP PHASE1:Hg19::chr8:82644741..82644791,+#_4fd23d3cd57f536dcaa7935143b5e55d | p2@CHMP4C |
| 1.91e-52 | FFCP PHASE2:Hg19::chr8:82644741..82644791,+#_4fd23d3cd57f536dcaa7935143b5e55d | p2@CHMP4C |
| 2.25e-52 | FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_feb260772e480adecc88c62581caa3a0 | p1@ESRP2 |
| 2.25e-52 | FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_feb260772e480adecc88c62581caa3a0 | p1@ESRP2 |
| 2.38e-52 | FFCP PHASE2:Hg19::chr12:80084737..80084763,-#_c8823ca06fb3afb6a78f7ff1c83c5280 | p3@PAWR |
| 2.38e-52 | FFCP PHASE1:Hg19::chr12:80084737..80084763,-#_c8823ca06fb3afb6a78f7ff1c83c5280 | p3@PAWR |
| 2.82e-52 | FFCP PHASE2:Hg19::chr8:144815895..144815912,-#_5a8bb3f8ba5d599d34f9cf46a64adfc5 | p4@FAM83H |
| 2.82e-52 | FFCP PHASE1:Hg19::chr8:144815895..144815912,-#_5a8bb3f8ba5d599d34f9cf46a64adfc5 | p4@FAM83H |
| 7.56e-52 | FFCP PHASE2:Hg19::chr1:35246802..35246823,+#_e72a66c2d677709ab550f4364c5bbd56 | p1@GJB3 |
| 7.56e-52 | FFCP PHASE1:Hg19::chr1:35246802..35246823,+#_e72a66c2d677709ab550f4364c5bbd56 | p1@GJB3 |
| 1.08e-51 | FFCP PHASE2:Mm9::chr2:167904248..167904260,+#_8de8dcfb47d691695b68213348e7fa79 | p@chr2:167904248..167904260, + |
| 1.08e-51 | FFCP PHASE1:Mm9::chr2:167904248..167904260,+#_8de8dcfb47d691695b68213348e7fa79 | p@chr2:167904248..167904260, + |
| 1.74e-51 | FFCP PHASE1:Hg19::chr1:24127235..24127253,-#_817e2cf411579a70db262b48bbf5ccf9 | p1@GALE |
| 1.74e-51 | FFCP PHASE2:Hg19::chr1:24127235..24127253,-#_817e2cf411579a70db262b48bbf5ccf9 | p1@GALE |
| 1.86e-51 | FFCP PHASE1:Hg19::chr22:46933490..46933535,-#_dbf285db2aab3509ca0d0121fb02a303 | p1@CELSR1 |
| 1.86e-51 | FFCP PHASE2:Hg19::chr22:46933490..46933535,-#_dbf285db2aab3509ca0d0121fb02a303 | p1@CELSR1 |
| 3.79e-51 | FFCP PHASE2:Hg19::chr12:80084768..80084821,-#_f66a966d45e1d6af3d4590650b9ecfd4 | p2@PAWR |
| 3.79e-51 | FFCP PHASE1:Hg19::chr12:80084768..80084821,-#_f66a966d45e1d6af3d4590650b9ecfd4 | p2@PAWR |
| 4.19e-51 | FFCP PHASE1:Hg19::chr20:361506..361517,+#_0b2a8b1767d510df5e783a2e111849a9 | p4@TRIB3 |
| 4.19e-51 | FFCP PHASE2:Hg19::chr20:361506..361517,+#_0b2a8b1767d510df5e783a2e111849a9 | p4@TRIB3 |
| 5.4e-51 | FFCP PHASE1:Hg19::chr20:361478..361491,+#_33e97809d9d37928168333b59edae118 | p5@TRIB3 |
| 5.4e-51 | FFCP PHASE2:Hg19::chr20:361478..361491,+#_33e97809d9d37928168333b59edae118 | p5@TRIB3 |
| 1.19e-50 | FFCP PHASE2:Hg19::chr19:36001122..36001196,-#_71a0a005cca29b5f8be320369e9f15f5 | p6@DMKN |
| 1.19e-50 | FFCP PHASE1:Hg19::chr19:36001122..36001196,-#_71a0a005cca29b5f8be320369e9f15f5 | p6@DMKN |
| 1.51e-50 | FFCP PHASE1:Hg19::chr2:27975692..27975750,+#_839437b0b3fb1e1c6f8f3362256ca26a | p@chr2:27975692..27975750, + |
| 1.51e-50 | FFCP PHASE2:Hg19::chr2:27975692..27975750,+#_839437b0b3fb1e1c6f8f3362256ca26a | p@chr2:27975692..27975750, + |
| 1.65e-50 | FFCP PHASE1:Hg19::chr11:394196..394258,+#_133f9c5e398af2f1aca7b3970779cf88 | p1@PKP3 |
| 1.65e-50 | FFCP PHASE2:Hg19::chr11:394196..394258,+#_133f9c5e398af2f1aca7b3970779cf88 | p1@PKP3 |
| 3.48e-50 | FFCP PHASE2:Hg19::chr20:60942361..60942376,-#_04d452389a9c0b823e811ee1032e8b88 | p1@LAMA5 |
| 3.48e-50 | FFCP PHASE1:Hg19::chr20:60942361..60942376,-#_04d452389a9c0b823e811ee1032e8b88 | p1@LAMA5 |
| 6.26e-50 | FFCP PHASE2:Hg19::chr22:46373034..46373058,-#_38b347a05b4a556862e4a685284c2b75 | p1@WNT7B |
| 6.26e-50 | FFCP PHASE1:Hg19::chr22:46373034..46373058,-#_38b347a05b4a556862e4a685284c2b75 | p1@WNT7B |
| 6.63e-50 | FFCP PHASE1:Hg19::chr17:7284402..7284414,+#_746f33edee2f8da7c136242ceab2b471 | p1@TNK1 |
| 6.63e-50 | FFCP PHASE2:Hg19::chr17:7284402..7284414,+#_746f33edee2f8da7c136242ceab2b471 | p1@TNK1 |
| 7.47e-50 | FFCP PHASE1:Hg19::chr14:23451753..23451767,-#_f0c1f61c4d3122e2ece0dde3fd121526 | p2@AJUBA |
| 7.47e-50 | FFCP PHASE2:Hg19::chr14:23451753..23451767,-#_f0c1f61c4d3122e2ece0dde3fd121526 | p2@AJUBA |
| 2.33e-49 | FFCP PHASE1:Hg19::chr1:155100387..155100398,+#_831482b15b8501e52ef771614c7aea1c | p3@EFNA1 |
| 2.33e-49 | FFCP PHASE2:Hg19::chr1:155100387..155100398,+#_831482b15b8501e52ef771614c7aea1c | p3@EFNA1 |
| 2.38e-49 | FFCP PHASE2:Hg19::chr14:71275492..71275543,+#_6138d1897235c219007784e52bb71305 | p@chr14:71275492..71275543, + |
| 2.38e-49 | FFCP PHASE1:Hg19::chr14:71275492..71275543,+#_6138d1897235c219007784e52bb71305 | p@chr14:71275492..71275543, + |
| 2.92e-49 | FFCP PHASE2:Hg19::chr4:79472888..79472970,+#_346bbbafc54aa15c3e5e532706499401 | p1@ANXA3 |
| 2.92e-49 | FFCP PHASE1:Hg19::chr4:79472888..79472970,+#_346bbbafc54aa15c3e5e532706499401 | p1@ANXA3 |
