UBERON:0002216: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=symphysis | |name=symphysis | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:28, 12 September 2014
| Name: | symphysis | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint.[FMA]" [FMA:FMA, Wikipedia:Symphysis] | ||
| Xrefs: |
| ||
| Synonyms: | "secondary cartilaginous joint" EXACT [FMA:7498] | ||
| Comments: | Editors note: consider adding fibrocartilage class | ||
| Alt_id: | UBERON:FMA_7498-MA_0001504 | ||
| Subset: | uberon_slim |
Gray298.png]
200px-Gray298.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002209(fibrous joint),UBERON:0002213(cartilaginous joint) |
|---|
Children
| is a: | UBERON:0001468 (intervertebral joint) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11409-118E5 (Nucleus Pulposus Cell, donor2)
- 11462-119B4 (Nucleus Pulposus Cell, donor3)
- 11463-119B5 (Anulus Pulposus Cell, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002216 (symphysis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.25e-162 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_9497bc51a5fc6fa19c084821d907085c | p@chr3:174737010..174737023, + |
| 1.25e-162 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_9497bc51a5fc6fa19c084821d907085c | p@chr3:174737010..174737023, + |
| 3.92e-140 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_6b315ea9160fd879dab3856669ace29a | p4@PAX1 |
| 3.92e-140 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_6b315ea9160fd879dab3856669ace29a | p4@PAX1 |
| 4.22e-99 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_43ba5a0086a9003415873d144b74dd34 | p@chr5:30104176..30104187, - |
| 4.22e-99 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_43ba5a0086a9003415873d144b74dd34 | p@chr5:30104176..30104187, - |
| 1.06e-78 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_cf33170bfc8d40a8b7846c9e056c4cb1 | p4@NKX3-2 |
| 1.06e-78 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_cf33170bfc8d40a8b7846c9e056c4cb1 | p4@NKX3-2 |
| 2.52e-71 | FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_4182e575d9ff186fa3455b7d6971889f | p@chr9:114135497..114135526, - |
| 2.52e-71 | FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_4182e575d9ff186fa3455b7d6971889f | p@chr9:114135497..114135526, - |
| 7.4e-71 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_cb2ae7ddc853c985f9d189b3378bac12 | p@chr2:241897125..241897142, - |
| 7.4e-71 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_cb2ae7ddc853c985f9d189b3378bac12 | p@chr2:241897125..241897142, - |
| 6.33e-70 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_6aa5dddf88c4f14e0ee2cb14bf057b3e | p@chr3:80727046..80727051, - |
| 6.33e-70 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_6aa5dddf88c4f14e0ee2cb14bf057b3e | p@chr3:80727046..80727051, - |
| 4.8e-67 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_2255c584a0170f7a3671f39ae9069b5f | p15@SNED1 |
| 4.8e-67 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_2255c584a0170f7a3671f39ae9069b5f | p15@SNED1 |
| 1.24e-66 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_98189b6bdaf35ac2c2bd56e9a566a5e4 | p20@CAPZB |
| 1.24e-66 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_98189b6bdaf35ac2c2bd56e9a566a5e4 | p20@CAPZB |
| 1.26e-62 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_12fa3960387665108099afa6606b081d | p@chr1:19778678..19778689, - |
| 1.26e-62 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_12fa3960387665108099afa6606b081d | p@chr1:19778678..19778689, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_e0caf1d5a15e6c2a5ef8a2ef84131ba6 | p@chr2:241897189..241897221, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_e0caf1d5a15e6c2a5ef8a2ef84131ba6 | p@chr2:241897189..241897221, - |
| 1.55e-57 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_8a2abbb0cf962cbc55472374c07ef392 | p1@uc010aki.1 |
| 1.55e-57 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_8a2abbb0cf962cbc55472374c07ef392 | p1@uc010aki.1 |
| 4.09e-56 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_d1df2f275cf06a5df237d2bff1a36475 | p6@SIX4 |
| 4.09e-56 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_d1df2f275cf06a5df237d2bff1a36475 | p6@SIX4 |
| 3.74e-53 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_2edc1430becee26d9073e963b3d72b55 | p3@uc010aki.1 |
| 3.74e-53 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_2edc1430becee26d9073e963b3d72b55 | p3@uc010aki.1 |
| 1.15e-51 | FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_38b4691fe54f81f35f1ed749e0c53000 | p3@PAX1 |
| 1.15e-51 | FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_38b4691fe54f81f35f1ed749e0c53000 | p3@PAX1 |
| 2.3e-51 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_2af4413276ba3843e9fc0ca2f75de311 | p@chr10:81923378..81923389, - |
| 2.3e-51 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_2af4413276ba3843e9fc0ca2f75de311 | p@chr10:81923378..81923389, - |
| 3.24e-51 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_de641a3678e61a142c1e9855847fc774 | p@chr2:12248310..12248334, - |
| 3.24e-51 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_de641a3678e61a142c1e9855847fc774 | p@chr2:12248310..12248334, - |
| 8.0e-51 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_46b33ea5dc95bb9130e2f67dbd60c744 | p19@HDAC9 |
| 8.0e-51 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_46b33ea5dc95bb9130e2f67dbd60c744 | p19@HDAC9 |
| 5.06e-49 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_33973505cd6a0b3986b500dc96aa732e | p@chr7:158224707..158224729, - |
| 5.06e-49 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_33973505cd6a0b3986b500dc96aa732e | p@chr7:158224707..158224729, - |
| 5.24e-48 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_266c61bccfe1b5b4e2b8565e1b92b1ed | p@chr1:65888177..65888194, + |
| 5.24e-48 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_266c61bccfe1b5b4e2b8565e1b92b1ed | p@chr1:65888177..65888194, + |
| 2.98e-45 | FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_ca1677e5877f4de7836d3a92eecd310d | p3@NKX3-2 |
| 2.98e-45 | FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_ca1677e5877f4de7836d3a92eecd310d | p3@NKX3-2 |
| 2.92e-44 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_0a8dbd13dbbcf771debb49244060d8d7 | p1@MGC27382 |
| 2.92e-44 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_0a8dbd13dbbcf771debb49244060d8d7 | p1@MGC27382 |
| 1.71e-43 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_d2175dbf9d6df19701add6493451dea0 | p18@HDAC9 |
| 1.71e-43 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_d2175dbf9d6df19701add6493451dea0 | p18@HDAC9 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_99613de788038e92683a0f68cdc8bc05 | p@chr9:33028063..33028067, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_99613de788038e92683a0f68cdc8bc05 | p@chr9:33028063..33028067, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_99613de788038e92683a0f68cdc8bc05 | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_99613de788038e92683a0f68cdc8bc05 | p@chr13:24914614..24914622, - |
| 1.64e-40 | FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_3d7747ee8ad632d6032719a9078c3726 | p1@PAX1 |
| 1.64e-40 | FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_3d7747ee8ad632d6032719a9078c3726 | p1@PAX1 |
| 1.81e-40 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_8f7978f957e4a5db87f85a8ea7ab202d | p5@PTGFR |
| 1.81e-40 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_8f7978f957e4a5db87f85a8ea7ab202d | p5@PTGFR |
| 2.13e-40 | FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_6baaeae9a25abe7f34071cc87e20bdae | p@chr2:241897363..241897398, + |
| 2.13e-40 | FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_6baaeae9a25abe7f34071cc87e20bdae | p@chr2:241897363..241897398, + |
| 3.04e-39 | FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_aa0af121c7e1d3eee45732325b9d4b91 | p2@PAX1 |
| 3.04e-39 | FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_aa0af121c7e1d3eee45732325b9d4b91 | p2@PAX1 |
| 7.19e-39 | FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_e31e779f0d38d38b324b0213c6490469 | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_e31e779f0d38d38b324b0213c6490469 | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_e31e779f0d38d38b324b0213c6490469 | p@chr5:140887761..140887777, + |
| 7.19e-39 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_e31e779f0d38d38b324b0213c6490469 | p@chr5:140887761..140887777, + |
| 1.24e-38 | FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_84ffefda6cd9e3ca034a19012632be08 | p4@NUP54 |
| 1.24e-38 | FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_84ffefda6cd9e3ca034a19012632be08 | p4@NUP54 |
| 2.08e-38 | FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_cd5116e5fc26162b239b4f30786f9ace | p@chr2:241938405..241938416, + |
| 2.08e-38 | FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_cd5116e5fc26162b239b4f30786f9ace | p@chr2:241938405..241938416, + |
| 3.34e-38 | FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_7159243b64863346b91a51797366cf93 | p1@NKX3-2 |
| 3.34e-38 | FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_7159243b64863346b91a51797366cf93 | p1@NKX3-2 |
| 3.68e-38 | FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_4a2d170441bb53f72dc4377f27d8cedb | p10@SYNJ2 |
| 3.68e-38 | FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_4a2d170441bb53f72dc4377f27d8cedb | p10@SYNJ2 |
| 5.39e-38 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_ad7addbd5ae0c8aa80cb0bb12f901bc8 | p@chr9:16138889..16138902, - |
| 5.39e-38 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_ad7addbd5ae0c8aa80cb0bb12f901bc8 | p@chr9:16138889..16138902, - |
| 8.66e-38 | FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_eca63a8813b43968f7e010c4c7871792 | p2@ENST00000518706 |
| 8.66e-38 | FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_eca63a8813b43968f7e010c4c7871792 | p2@ENST00000518706 |
| 2.96e-37 | FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_3d63dd29dbbf363d1de3317969d7530a | p1@ENST00000436845 |
| 2.96e-37 | FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_3d63dd29dbbf363d1de3317969d7530a | p1@ENST00000436845 |
| 6.92e-37 | FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_e4f147fbc40e7d9b485601a7c74d1032 | p12@CDK5RAP2 |
| 6.92e-37 | FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_e4f147fbc40e7d9b485601a7c74d1032 | p12@CDK5RAP2 |
| 3.28e-36 | FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_f38d8bfb4470aa9e2566adb069b6b832 | p1@ENST00000413519 |
| 3.28e-36 | FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_f38d8bfb4470aa9e2566adb069b6b832 | p1@ENST00000413519 |
| 9.62e-35 | FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_c6d431f37f6337a7f017f8fde6f7fe60 | p4@PAX9 |
| 9.62e-35 | FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_c6d431f37f6337a7f017f8fde6f7fe60 | p4@PAX9 |
| 1.8e-34 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_6f5bfdeedc3c6e3806b3dc4f9a57aa1d | p@chr7:100202784..100202796, - |
| 1.8e-34 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_6f5bfdeedc3c6e3806b3dc4f9a57aa1d | p@chr7:100202784..100202796, - |
| 3.69e-34 | FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_d60eaaab39b3f26aaab0b411c3c3d177 | p8@HOXC6 |
| 3.69e-34 | FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_d60eaaab39b3f26aaab0b411c3c3d177 | p8@HOXC6 |
| 5.52e-34 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_810aa964f715330c1ceba16847ee93fe | p6@CCDC86 |
| 5.52e-34 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_810aa964f715330c1ceba16847ee93fe | p6@CCDC86 |
| 1.43e-33 | FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_9931ad6c6c94ccaaa8acf31921ad28ec | p@chr20:21695435..21695452, + |
| 1.43e-33 | FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_9931ad6c6c94ccaaa8acf31921ad28ec | p@chr20:21695435..21695452, + |
| 5.36e-33 | FFCP PHASE1:Hg19::chr16:70795228..70795237,+#_98205bef30d707c34766d4bcb943a1f8 | p@chr16:70795228..70795237, + |
| 5.36e-33 | FFCP PHASE2:Hg19::chr16:70795228..70795237,+#_98205bef30d707c34766d4bcb943a1f8 | p@chr16:70795228..70795237, + |
| 1.05e-32 | FFCP PHASE1:Hg19::chr3:158384350..158384362,-#_a836964b45a1f9592ffbdc88173fc5e3 | p@chr3:158384350..158384362, - |
| 1.05e-32 | FFCP PHASE2:Hg19::chr3:158384350..158384362,-#_a836964b45a1f9592ffbdc88173fc5e3 | p@chr3:158384350..158384362, - |
| 1.7e-32 | FFCP PHASE2:Hg19::chr2:158345440..158345449,-#_77e9a41c893c98b817639cb76b4489d5 | p9@CYTIP |
| 1.7e-32 | FFCP PHASE1:Hg19::chr2:158345440..158345449,-#_77e9a41c893c98b817639cb76b4489d5 | p9@CYTIP |
| 2.34e-32 | FFCP PHASE1:Hg19::chr18:12012068..12012098,+#_feaa3a57b42530feb1610a6baf77f313 | p@chr18:12012068..12012098, + |
| 2.34e-32 | FFCP PHASE2:Hg19::chr18:12012068..12012098,+#_feaa3a57b42530feb1610a6baf77f313 | p@chr18:12012068..12012098, + |
| 2.79e-31 | FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_208060921f9c55248c0022f5cc94813c | p1@ENST00000555639 |
| 2.79e-31 | FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_208060921f9c55248c0022f5cc94813c | p1@ENST00000555639 |
