UBERON:0002784: Difference between revisions
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|located_in= | |located_in= | ||
|name=regional part of diencephalon | |name=regional part of diencephalon | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001894 | |part_of=UBERON:0001894 |
Latest revision as of 17:35, 12 September 2014
Name: | regional part of diencephalon | ||
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Namespace: | FANTOM | ||
Definition: | "A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic] | ||
Xrefs: |
| ||
Synonyms: |
"anatomical structure of brain of between brain" EXACT [OBOL:automatic] "anatomical structure of brain of diencephalon" EXACT [OBOL:automatic] "anatomical structure of brain of interbrain" EXACT [OBOL:automatic] "anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic] "between brain anatomical structure of brain" EXACT [OBOL:automatic] "between brain biological structure of brain" EXACT [OBOL:automatic] "between brain brain anatomical structure" EXACT [OBOL:automatic] "between brain brain biological structure" EXACT [OBOL:automatic] "between brain neuraxis segment" EXACT [OBOL:automatic] "between brain regional part of brain" EXACT [OBOL:automatic] "between brain segment of brain" EXACT [OBOL:automatic] "biological structure of brain of between brain" EXACT [OBOL:automatic] "biological structure of brain of diencephalon" EXACT [OBOL:automatic] "biological structure of brain of interbrain" EXACT [OBOL:automatic] "biological structure of brain of mature diencephalon" EXACT [OBOL:automatic] "brain anatomical structure of between brain" EXACT [OBOL:automatic] "brain anatomical structure of diencephalon" EXACT [OBOL:automatic] "brain anatomical structure of interbrain" EXACT [OBOL:automatic] "brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic] "brain biological structure of between brain" EXACT [OBOL:automatic] "brain biological structure of diencephalon" EXACT [OBOL:automatic] "brain biological structure of interbrain" EXACT [OBOL:automatic] "brain biological structure of mature diencephalon" EXACT [OBOL:automatic] "diencephalon anatomical structure of brain" EXACT [OBOL:automatic] "diencephalon biological structure of brain" EXACT [OBOL:automatic] "diencephalon brain anatomical structure" EXACT [OBOL:automatic] "diencephalon brain biological structure" EXACT [OBOL:automatic] "diencephalon neuraxis segment" EXACT [OBOL:automatic] "diencephalon regional part of brain" EXACT [OBOL:automatic] "diencephalon segment" EXACT [FMA:62005] "diencephalon segment of brain" EXACT [OBOL:automatic] "interbrain anatomical structure of brain" EXACT [OBOL:automatic] "interbrain biological structure of brain" EXACT [OBOL:automatic] "interbrain brain anatomical structure" EXACT [OBOL:automatic] "interbrain brain biological structure" EXACT [OBOL:automatic] "interbrain neuraxis segment" EXACT [OBOL:automatic] "interbrain regional part of brain" EXACT [OBOL:automatic] "interbrain segment of brain" EXACT [OBOL:automatic] "mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic] "mature diencephalon biological structure of brain" EXACT [OBOL:automatic] "mature diencephalon brain anatomical structure" EXACT [OBOL:automatic] "mature diencephalon brain biological structure" EXACT [OBOL:automatic] "mature diencephalon neuraxis segment" EXACT [OBOL:automatic] "mature diencephalon regional part of brain" EXACT [OBOL:automatic] "mature diencephalon segment of brain" EXACT [OBOL:automatic] "neuraxis segment of between brain" EXACT [OBOL:automatic] "neuraxis segment of diencephalon" EXACT [OBOL:automatic] "neuraxis segment of interbrain" EXACT [OBOL:automatic] "neuraxis segment of mature diencephalon" EXACT [OBOL:automatic] "regional part of brain of between brain" EXACT [OBOL:automatic] "regional part of brain of diencephalon" EXACT [OBOL:automatic] "regional part of brain of interbrain" EXACT [OBOL:automatic] "regional part of brain of mature diencephalon" EXACT [OBOL:automatic] "segment of brain of between brain" EXACT [OBOL:automatic] "segment of brain of diencephalon" EXACT [OBOL:automatic] "segment of brain of interbrain" EXACT [OBOL:automatic] "segment of brain of mature diencephalon" EXACT [OBOL:automatic] "segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685] | ||
Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002780(regional part of forebrain) |
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part_of: | UBERON:0001894(diencephalon) |
Children
is a: | UBERON:0001897 (dorsal plus ventral thalamus),UBERON:0001899 (epithalamus),UBERON:0002757 (regional part of epithalamus),UBERON:0010225 (thalamic complex) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10154-103A1 (thalamus, adult, donor10252)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10168-103B6 (thalamus - adult, donor10196)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10366-105F6 (thalamus, newborn, donor10223)
- 10370-105G1 (thalamus, adult, donor10258)
- 10377-105G8 (pineal gland, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002784 (regional part of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
2.76e-110 | FFCP PHASE2:Hg19::chr15:75122737..75122741,+#_79d90823136ff9090c698e3c2def78c6 | p@chr15:75122737..75122741, + |
2.76e-110 | FFCP PHASE1:Hg19::chr15:75122737..75122741,+#_79d90823136ff9090c698e3c2def78c6 | p@chr15:75122737..75122741, + |
1.55e-98 | FFCP PHASE2:Hg19::chr1:99860883..99860921,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:99860883..99860921, - |
1.55e-98 | FFCP PHASE2:Hg19::chr5:119867229..119867240,+#_d4b612b81135e7d6f100ad68e256a789 | p9@PRR16 |
1.55e-98 | FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr7:129084265..129084288, - |
1.55e-98 | FFCP PHASE1:Hg19::chr8:135522475..135522486,-#_d4b612b81135e7d6f100ad68e256a789 | p16@ZFAT |
1.55e-98 | FFCP PHASE2:Hg19::chr8:135473748..135473753,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135473748..135473753, - |
1.55e-98 | FFCP PHASE2:Hg19::chr11:18067959..18067962,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18067959..18067962, - |
1.55e-98 | FFCP PHASE1:Hg19::chr3:100942645..100942655,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:100942645..100942655, - |
1.55e-98 | FFCP PHASE1:Hg19::chr8:99033409..99033415,+#_d4b612b81135e7d6f100ad68e256a789 | p16@MATN2 |
1.55e-98 | FFCP PHASE2:Hg19::chr4:20985967..20985972,-#_d4b612b81135e7d6f100ad68e256a789 | p28@KCNIP4 |
1.55e-98 | FFCP PHASE1:Hg19::chr13:52650541..52650548,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr13:52650541..52650548, - |
1.55e-98 | FFCP PHASE1:Hg19::chr2:216447404..216447411,-#_d4b612b81135e7d6f100ad68e256a789 | p1@ENST00000457625 |
1.55e-98 | FFCP PHASE1:Hg19::chr8:135504353..135504365,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135504353..135504365, - |
1.55e-98 | FFCP PHASE2:Hg19::chr16:18066392..18066397,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:18066392..18066397, - |
1.55e-98 | FFCP PHASE2:Hg19::chrX:146290937..146290942,+#_d4b612b81135e7d6f100ad68e256a789 | p@chrX:146290937..146290942, + |
1.55e-98 | FFCP PHASE2:Hg19::chr6:13009334..13009341,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr6:13009334..13009341, - |
1.55e-98 | FFCP PHASE1:Hg19::chr14:55282406..55282415,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr14:55282406..55282415, - |
1.55e-98 | FFCP PHASE2:Hg19::chr6:33087873..33087886,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr6:33087873..33087886, - |
1.55e-98 | FFCP PHASE2:Hg19::chr3:54952420..54952425,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:54952420..54952425, - |
1.55e-98 | FFCP PHASE1:Hg19::chr11:18067959..18067962,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18067959..18067962, - |
1.55e-98 | FFCP PHASE1:Hg19::chr8:135473063..135473075,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135473063..135473075, - |
1.55e-98 | FFCP PHASE1:Hg19::chr5:119799539..119799543,+#_d4b612b81135e7d6f100ad68e256a789 | p13@PRR16 |
1.55e-98 | FFCP PHASE1:Hg19::chr9:37692930..37692936,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr9:37692930..37692936, + |
1.55e-98 | FFCP PHASE1:Hg19::chr1:57914395..57914398,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:57914395..57914398, + |
1.55e-98 | FFCP PHASE1:Hg19::chr11:84530787..84530803,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:84530787..84530803, + |
1.55e-98 | FFCP PHASE1:Hg19::chr1:204667243..204667248,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:204667243..204667248, + |
1.55e-98 | FFCP PHASE1:Hg19::chr1:13820103..13820109,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:13820103..13820109, + |
1.55e-98 | FFCP PHASE2:Hg19::chr7:9202487..9202498,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr7:9202487..9202498, - |
1.55e-98 | FFCP PHASE1:Hg19::chr12:121088132..121088135,+#_d4b612b81135e7d6f100ad68e256a789 | p15@CABP1 |
1.55e-98 | FFCP PHASE2:Hg19::chr3:100942376..100942381,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:100942376..100942381, - |
1.55e-98 | FFCP PHASE1:Hg19::chr8:135473748..135473753,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135473748..135473753, - |
1.55e-98 | FFCP PHASE2:Hg19::chr14:55282406..55282415,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr14:55282406..55282415, - |
1.55e-98 | FFCP PHASE2:Hg19::chr17:74463567..74463574,+#_d4b612b81135e7d6f100ad68e256a789 | p4@AANAT |
1.55e-98 | FFCP PHASE2:Hg19::chr2:108602341..108602352,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr2:108602341..108602352, + |
1.55e-98 | FFCP PHASE1:Hg19::chr12:49621658..49621666,+#_d4b612b81135e7d6f100ad68e256a789 | p21@TUBA1C |
1.55e-98 | FFCP PHASE1:Hg19::chr12:99734965..99734976,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr12:99734965..99734976, - |
1.55e-98 | FFCP PHASE1:Hg19::chr11:18041194..18041197,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18041194..18041197, - |
1.55e-98 | FFCP PHASE1:Hg19::chr3:139938385..139938390,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:139938385..139938390, + |
1.55e-98 | FFCP PHASE2:Hg19::chr13:52650541..52650548,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr13:52650541..52650548, - |
1.55e-98 | FFCP PHASE2:Hg19::chr12:6954834..6954841,+#_d4b612b81135e7d6f100ad68e256a789 | p9@GNB3 |
1.55e-98 | FFCP PHASE2:Hg19::chr8:116085391..116085419,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:116085391..116085419, + |
1.55e-98 | FFCP PHASE2:Hg19::chr1:240177602..240177607,+#_d4b612b81135e7d6f100ad68e256a789 | p17@FMN2 |
1.55e-98 | FFCP PHASE2:Hg19::chr18:56962131..56962138,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr18:56962131..56962138, - |
1.55e-98 | FFCP PHASE2:Hg19::chr12:121088121..121088131,+#_d4b612b81135e7d6f100ad68e256a789 | p11@CABP1 |
1.55e-98 | FFCP PHASE2:Hg19::chr11:18041199..18041200,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18041199..18041200, - |
1.55e-98 | FFCP PHASE2:Hg19::chr8:99033417..99033423,+#_d4b612b81135e7d6f100ad68e256a789 | p17@MATN2 |
1.55e-98 | FFCP PHASE2:Hg19::chr11:18063669..18063678,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18063669..18063678, - |
1.55e-98 | FFCP PHASE1:Hg19::chrX:146290937..146290942,+#_d4b612b81135e7d6f100ad68e256a789 | p@chrX:146290937..146290942, + |
1.55e-98 | FFCP PHASE2:Hg19::chr9:88661694..88661709,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr9:88661694..88661709, - |
1.55e-98 | FFCP PHASE1:Hg19::chr1:99860786..99860791,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:99860786..99860791, - |
1.55e-98 | FFCP PHASE2:Hg19::chr13:21399081..21399087,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr13:21399081..21399087, + |
1.55e-98 | FFCP PHASE1:Hg19::chr7:9202487..9202498,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr7:9202487..9202498, - |
1.55e-98 | FFCP PHASE1:Hg19::chr7:120842768..120842790,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr7:120842768..120842790, - |
1.55e-98 | FFCP PHASE2:Hg19::chr8:87751918..87751928,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:87751918..87751928, - |
1.55e-98 | FFCP PHASE2:Hg19::chr12:49621641..49621650,+#_d4b612b81135e7d6f100ad68e256a789 | p22@TUBA1C |
1.55e-98 | FFCP PHASE2:Hg19::chr16:51174216..51174239,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:51174216..51174239, - |
1.55e-98 | FFCP PHASE1:Hg19::chr10:80984180..80984190,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr10:80984180..80984190, - |
1.55e-98 | FFCP PHASE2:Hg19::chr12:99734965..99734976,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr12:99734965..99734976, - |
1.55e-98 | FFCP PHASE2:Hg19::chr7:9228468..9228494,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr7:9228468..9228494, - |
1.55e-98 | FFCP PHASE1:Hg19::chr2:17185958..17185998,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr2:17185958..17185998, + |
1.55e-98 | FFCP PHASE1:Hg19::chr11:18063669..18063678,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18063669..18063678, - |
1.55e-98 | FFCP PHASE2:Hg19::chr3:101038595..101038604,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:101038595..101038604, - |
1.55e-98 | FFCP PHASE2:Hg19::chr8:135504405..135504410,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135504405..135504410, - |
1.55e-98 | FFCP PHASE1:Hg19::chr3:54952462..54952471,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:54952462..54952471, - |
1.55e-98 | FFCP PHASE1:Hg19::chr14:49512240..49512248,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr14:49512240..49512248, - |
1.55e-98 | FFCP PHASE1:Hg19::chr8:116085391..116085419,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:116085391..116085419, + |
1.55e-98 | FFCP PHASE2:Hg19::chr3:17085717..17085733,-#_d4b612b81135e7d6f100ad68e256a789 | p2@PLCL2-AS1 |
1.55e-98 | FFCP PHASE2:Hg19::chr12:55422858..55422866,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr12:55422858..55422866, + |
1.55e-98 | FFCP PHASE1:Hg19::chr16:18066399..18066411,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:18066399..18066411, - |
1.55e-98 | FFCP PHASE2:Hg19::chr2:17064630..17064651,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr2:17064630..17064651, + |
1.55e-98 | FFCP PHASE1:Hg19::chr12:56582028..56582062,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr12:56582028..56582062, + |
1.55e-98 | FFCP PHASE1:Hg19::chr1:154540028..154540037,+#_d4b612b81135e7d6f100ad68e256a789 | p4@CHRNB2 |
1.55e-98 | FFCP PHASE1:Hg19::chr5:135732714..135732721,-#_d4b612b81135e7d6f100ad68e256a789 | p2@ENST00000514282 |
1.55e-98 | FFCP PHASE2:Hg19::chr7:32468385..32468392,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr7:32468385..32468392, - |
1.55e-98 | FFCP PHASE1:Hg19::chr9:88661694..88661709,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr9:88661694..88661709, - |
1.55e-98 | FFCP PHASE2:Hg19::chr5:119868809..119868839,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr5:119868809..119868839, + |
1.55e-98 | FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:107545606..107545631, - |
1.55e-98 | FFCP PHASE2:Hg19::chr4:1188439..1188454,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr4:1188439..1188454, - |
1.55e-98 | FFCP PHASE1:Hg19::chr16:17930871..17930877,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:17930871..17930877, - |
1.55e-98 | FFCP PHASE1:Hg19::chr8:99033417..99033423,+#_d4b612b81135e7d6f100ad68e256a789 | p17@MATN2 |
1.55e-98 | FFCP PHASE1:Hg19::chr7:9228468..9228494,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr7:9228468..9228494, - |
1.55e-98 | FFCP PHASE2:Hg19::chr1:45782001..45782009,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:45782001..45782009, + |
1.55e-98 | FFCP PHASE1:Hg19::chr2:216447425..216447432,-#_d4b612b81135e7d6f100ad68e256a789 | p2@ENST00000457625 |
1.55e-98 | FFCP PHASE1:Hg19::chr8:135504405..135504410,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135504405..135504410, - |
1.55e-98 | FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:18066399..18066411, - |
1.55e-98 | FFCP PHASE2:Hg19::chr11:18039672..18039678,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr11:18039672..18039678, - |
1.55e-98 | FFCP PHASE1:Hg19::chr3:192894646..192894653,-#_d4b612b81135e7d6f100ad68e256a789 | p2@ENST00000414895 |
1.55e-98 | FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:87751918..87751928, - |
1.55e-98 | FFCP PHASE1:Hg19::chr6:158734173..158734183,+#_d4b612b81135e7d6f100ad68e256a789 | p7@TULP4 |
1.55e-98 | FFCP PHASE2:Hg19::chr5:135732675..135732680,-#_d4b612b81135e7d6f100ad68e256a789 | p3@ENST00000514282 |
1.55e-98 | FFCP PHASE2:Hg19::chr3:54952432..54952459,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:54952432..54952459, - |
1.55e-98 | FFCP PHASE2:Hg19::chr14:49512240..49512248,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr14:49512240..49512248, - |
1.55e-98 | FFCP PHASE2:Hg19::chr8:135520309..135520324,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135520309..135520324, - |
1.55e-98 | FFCP PHASE2:Hg19::chr16:17930871..17930877,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr16:17930871..17930877, - |
1.55e-98 | FFCP PHASE1:Hg19::chr5:119799576..119799585,+#_d4b612b81135e7d6f100ad68e256a789 | p10@PRR16 |
1.55e-98 | FFCP PHASE1:Hg19::chr1:57914399..57914402,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr1:57914399..57914402, + |
1.55e-98 | FFCP PHASE2:Hg19::chr8:135472861..135472868,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr8:135472861..135472868, - |
1.55e-98 | FFCP PHASE1:Hg19::chr2:17141934..17141935,+#_d4b612b81135e7d6f100ad68e256a789 | p@chr2:17141934..17141935, + |
1.55e-98 | FFCP PHASE2:Hg19::chr3:100942645..100942655,-#_d4b612b81135e7d6f100ad68e256a789 | p@chr3:100942645..100942655, - |