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|located_in=
|located_in=
|name=subdivision of digestive tract
|name=subdivision of digestive tract
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001555
|part_of=UBERON:0001555

Latest revision as of 17:49, 12 September 2014

Name:subdivision of digestive tract
Namespace:FANTOM
Xrefs:
links:

FBbt:00100315

FMA:71131
Synonyms: "alimentary system subdivision" EXACT [FMA:71131]
"subdivision of alimentary system" EXACT [FMA:71131]
Comments:intended to denote both embryonic and adult structures. Note the FMA grouping here is not quite correct. we include pharynx, esophagus here, we may want an additional term for major subdivisions (fore/mid/hind vs upper/lower)

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0013522(subdivision of tube)
part_of:UBERON:0001555(digestive tract)



Children

is a:UBERON:0000059 (large intestine),UBERON:0000160 (intestine),UBERON:0000945 (stomach),UBERON:0001041 (foregut),UBERON:0001043 (esophagus),UBERON:0001045 (midgut),UBERON:0001046 (hindgut),UBERON:0001052 (rectum),UBERON:0001155 (colon),UBERON:0002108 (small intestine),UBERON:0002114 (duodenum),UBERON:0002116 (ileum),UBERON:0004185 (endodermal part of digestive tract),UBERON:0004906 (ectodermal part of digestive tract),UBERON:0004907 (lower digestive tract),UBERON:0004908 (upper digestive tract),UBERON:0006562 (pharynx),UBERON:0006866 (terminal part of digestive tract),UBERON:0009854 (digestive tract diverticulum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004921 (subdivision of digestive tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.06e-41FFCP PHASE2:Hg19::chr14:38064429..38064486,-#_6f80dc799f9475b3d34115fee71fd756p1@FOXA1
8.06e-41FFCP PHASE1:Hg19::chr14:38064429..38064486,-#_6f80dc799f9475b3d34115fee71fd756p1@FOXA1
1.9e-32FFCP PHASE2:Hg19::chr18:47721315..47721430,-#_4cb280729f881741170bcfadb4aa5be2p1@MYO5B
1.9e-32FFCP PHASE1:Hg19::chr18:47721315..47721430,-#_4cb280729f881741170bcfadb4aa5be2p1@MYO5B
7.16e-32FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_e8fbd12f7cf8515253b6e696acc7e2adp1@ESRP2
7.16e-32FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_e8fbd12f7cf8515253b6e696acc7e2adp1@ESRP2
9.13e-31FFCP PHASE1:Hg19::chr5:134369879..134369898,-#_93f2ea9446725c5fcb7d1fa06e5cc03cp2@PITX1
9.13e-31FFCP PHASE2:Hg19::chr5:134369879..134369898,-#_93f2ea9446725c5fcb7d1fa06e5cc03cp2@PITX1
9.38e-31FFCP PHASE1:Hg19::chr10:114133905..114133922,+#_707579b540632efed555e884e6d522e8p2@ACSL5
9.38e-31FFCP PHASE2:Hg19::chr10:114133905..114133922,+#_707579b540632efed555e884e6d522e8p2@ACSL5
1.23e-30FFCP PHASE1:Hg19::chr14:38064590..38064606,-#_e96569e1e0a63c05b8f641c2e0909166p2@FOXA1
1.23e-30FFCP PHASE2:Hg19::chr14:38064590..38064606,-#_e96569e1e0a63c05b8f641c2e0909166p2@FOXA1
4.56e-30FFCP PHASE2:Hg19::chr19:42212526..42212575,+#_28d456fc6d5b4e4a493ad497e25967b6p1@CEACAM5
4.56e-30FFCP PHASE1:Hg19::chr19:42212526..42212575,+#_28d456fc6d5b4e4a493ad497e25967b6p1@CEACAM5
5.55e-30FFCP PHASE2:Hg19::chr12:71551772..71551786,-#_4d2db0590f43171fd1a8f4139cf71cd7p2@TSPAN8
5.55e-30FFCP PHASE1:Hg19::chr12:71551772..71551786,-#_4d2db0590f43171fd1a8f4139cf71cd7p2@TSPAN8
1.29e-29FFCP PHASE1:Hg19::chr7:1595831..1595858,-#_1d352fa7e86b1d7ee6d590e215233b6fp1@TMEM184A
1.29e-29FFCP PHASE2:Hg19::chr7:1595831..1595858,-#_1d352fa7e86b1d7ee6d590e215233b6fp1@TMEM184A
3.25e-29FFCP PHASE2:Hg19::chr7:120498357..120498395,-#_4f4cc05752e2996cfa3584abe23d6df7p3@TSPAN12
3.25e-29FFCP PHASE1:Hg19::chr7:120498357..120498395,-#_4f4cc05752e2996cfa3584abe23d6df7p3@TSPAN12
3.54e-29FFCP PHASE2:Hg19::chr14:65409452..65409479,-#_c20ea416d94af341fda7d19a1b02ac84p1@GPX2
3.54e-29FFCP PHASE1:Hg19::chr14:65409452..65409479,-#_c20ea416d94af341fda7d19a1b02ac84p1@GPX2
5.41e-29FFCP PHASE2:Hg19::chr6:80340818..80340825,+#_00d32fadc8858507f753bda7428b990cp7@SH3BGRL2
5.41e-29FFCP PHASE1:Hg19::chr6:80340818..80340825,+#_00d32fadc8858507f753bda7428b990cp7@SH3BGRL2
5.54e-29FFCP PHASE2:Hg19::chr8:128231080..128231222,-#_ec68ccc8db11d18eb0fa1f291e108e69p1@ENST00000500112, p1@uc003ysa.1
5.54e-29FFCP PHASE1:Hg19::chr8:128231080..128231222,-#_ec68ccc8db11d18eb0fa1f291e108e69p1@ENST00000500112, p1@uc003ysa.1
6.22e-29FFCP PHASE2:Hg19::chr16:19422035..19422090,+#_eeabb3d1959d6f1072f976e6a26a416dp3@TMC5
6.22e-29FFCP PHASE1:Hg19::chr16:19422035..19422090,+#_eeabb3d1959d6f1072f976e6a26a416dp3@TMC5
8.03e-29FFCP PHASE1:Mm9::chr12:58646974..58647003,-#_e63337a365860fd0b7ec73d9d65b0710p1@Foxa1
8.03e-29FFCP PHASE2:Mm9::chr12:58646974..58647003,-#_e63337a365860fd0b7ec73d9d65b0710p1@Foxa1
8.45e-29FFCP PHASE1:Hg19::chr1:201979743..201979762,+#_efb298d0bdae85ceb0a66d5ab88d995dp1@ELF3
8.45e-29FFCP PHASE2:Hg19::chr1:201979743..201979762,+#_efb298d0bdae85ceb0a66d5ab88d995dp1@ELF3
1.02e-28FFCP PHASE2:Hg19::chr5:125706998..125707018,+#_fca66067f9b14b4038db16c621c5bffbp4@GRAMD3
1.02e-28FFCP PHASE1:Hg19::chr5:125706998..125707018,+#_fca66067f9b14b4038db16c621c5bffbp4@GRAMD3
2.23e-28FFCP PHASE1:Hg19::chr10:114133868..114133893,+#_c5ff3f811e564edf06ee4c22b5bc1379p3@ACSL5
2.23e-28FFCP PHASE2:Hg19::chr10:114133868..114133893,+#_c5ff3f811e564edf06ee4c22b5bc1379p3@ACSL5
3.01e-28FFCP PHASE1:Hg19::chr20:62168672..62168713,-#_b71dffe1fbfc2cba8750ff62fdf630a3p1@PTK6
3.01e-28FFCP PHASE2:Hg19::chr20:62168672..62168713,-#_b71dffe1fbfc2cba8750ff62fdf630a3p1@PTK6
3.68e-28FFCP PHASE1:Hg19::chr19:3708338..3708374,+#_3fd997659369c2117491a852060d45ddp2@TJP3
3.68e-28FFCP PHASE2:Hg19::chr19:3708338..3708374,+#_3fd997659369c2117491a852060d45ddp2@TJP3
4.24e-28FFCP PHASE1:Mm9::chr2:180976725..180976753,-#_8a0985784ae686d60d89fa5fdf1faddep2@BC006779
4.24e-28FFCP PHASE2:Mm9::chr2:180976725..180976753,-#_8a0985784ae686d60d89fa5fdf1faddep2@BC006779
9.33e-28FFCP PHASE2:Mm9::chr13:4190454..4190472,+#_fc13d60c2e94f6d9e4e06da43abb105ep2@Akr1c13
9.33e-28FFCP PHASE1:Mm9::chr13:4190454..4190472,+#_fc13d60c2e94f6d9e4e06da43abb105ep2@Akr1c13
1.98e-27FFCP PHASE2:Hg19::chr3:142315294..142315315,+#_9e71340b52332945ef5b5b76ee6c272ep3@PLS1
1.98e-27FFCP PHASE1:Hg19::chr3:142315294..142315315,+#_9e71340b52332945ef5b5b76ee6c272ep3@PLS1
3.34e-27FFCP PHASE1:Hg19::chr17:7164410..7164457,-#_0a321e49fc58c9febcdf9a0485af837dp3@CLDN7
3.34e-27FFCP PHASE2:Hg19::chr17:7164410..7164457,-#_0a321e49fc58c9febcdf9a0485af837dp3@CLDN7
5.93e-27FFCP PHASE2:Hg19::chr13:76334824..76334862,+#_e6212fe0cf1ba0278762fa3f843c0a51p2@LMO7
5.93e-27FFCP PHASE1:Hg19::chr13:76334824..76334862,+#_e6212fe0cf1ba0278762fa3f843c0a51p2@LMO7
9.05e-27FFCP PHASE1:Mm9::chr5:65194752..65194769,+#_7231d79e4186619bf030b8cc68327dbap1@Klf3
9.05e-27FFCP PHASE2:Mm9::chr5:65194752..65194769,+#_7231d79e4186619bf030b8cc68327dbap1@Klf3
1.34e-26FFCP PHASE1:Hg19::chr10:101690650..101690683,-#_645fb10100394b0525f16423eb333776p2@DNMBP
1.34e-26FFCP PHASE2:Hg19::chr10:101690650..101690683,-#_645fb10100394b0525f16423eb333776p2@DNMBP
1.43e-26FFCP PHASE1:Hg19::chr3:185046677..185046694,+#_a0f8d7fb9218261556fc22f2b38095b9p3@MAP3K13
1.43e-26FFCP PHASE2:Hg19::chr3:185046677..185046694,+#_a0f8d7fb9218261556fc22f2b38095b9p3@MAP3K13
2.3e-26FFCP PHASE1:Mm9::chr8:70018742..70018782,+#_c4d8ad7a910cf59b72edffc331a928a2p1@Nat2
2.3e-26FFCP PHASE2:Mm9::chr8:70018742..70018782,+#_c4d8ad7a910cf59b72edffc331a928a2p1@Nat2
3.22e-26FFCP PHASE2:Hg19::chr2:233320827..233320853,+#_f7db6f3b4e893101a1f0198129de852bp2@ALPI
3.22e-26FFCP PHASE1:Hg19::chr2:233320827..233320853,+#_f7db6f3b4e893101a1f0198129de852bp2@ALPI
3.46e-26FFCP PHASE2:Hg19::chr2:233320855..233320886,+#_7d88db18b467dbc849a0add2a917634ap1@ALPI
3.46e-26FFCP PHASE1:Hg19::chr2:233320855..233320886,+#_7d88db18b467dbc849a0add2a917634ap1@ALPI
5.63e-26FFCP PHASE1:Hg19::chr16:68260798..68260800,-#_3fd0e3122ea70599141595beec341a18p@chr16:68260798..68260800, -
5.63e-26FFCP PHASE2:Hg19::chr16:68260798..68260800,-#_3fd0e3122ea70599141595beec341a18p@chr16:68260798..68260800, -
7.37e-26FFCP PHASE1:Hg19::chr1:201979703..201979721,+#_f5135f2798c10581569794865b26b13dp2@ELF3
7.37e-26FFCP PHASE2:Hg19::chr1:201979703..201979721,+#_f5135f2798c10581569794865b26b13dp2@ELF3
8.51e-26FFCP PHASE1:Mm9::chr2:51828449..51828501,-#_0f3a3769dd66e60272c72a048f8568ffp1@Nmi
8.51e-26FFCP PHASE2:Mm9::chr2:51828449..51828501,-#_0f3a3769dd66e60272c72a048f8568ffp1@Nmi
1.36e-25FFCP PHASE2:Hg19::chr6:116381918..116381977,-#_ee06ec1e0f5bf698e5cdbabb449059e0p1@FRK
1.36e-25FFCP PHASE1:Hg19::chr6:116381918..116381977,-#_ee06ec1e0f5bf698e5cdbabb449059e0p1@FRK
1.37e-25FFCP PHASE1:Hg19::chr19:17905938..17905980,+#_7f4fabf2bb611be671efb22216bac06dp1@B3GNT3
1.37e-25FFCP PHASE2:Hg19::chr19:17905938..17905980,+#_7f4fabf2bb611be671efb22216bac06dp1@B3GNT3
1.42e-25FFCP PHASE2:Hg19::chr1:110306531..110306553,-#_19809578565c4dd713a4caf4ee5313f0p1@EPS8L3
1.42e-25FFCP PHASE1:Hg19::chr1:110306531..110306553,-#_19809578565c4dd713a4caf4ee5313f0p1@EPS8L3
2.13e-25FFCP PHASE2:Hg19::chr7:87856303..87856312,-#_5a9146bdec1b352e32166ac596503bc3p3@SRI
2.13e-25FFCP PHASE1:Hg19::chr7:87856303..87856312,-#_5a9146bdec1b352e32166ac596503bc3p3@SRI
2.93e-25FFCP PHASE1:Hg19::chr2:238499337..238499408,-#_29f2ffe7b9a27a3d2833b35896109b72p1@RAB17
2.93e-25FFCP PHASE2:Hg19::chr2:238499337..238499408,-#_29f2ffe7b9a27a3d2833b35896109b72p1@RAB17
3.01e-25FFCP PHASE2:Mm9::chr1:58852306..58852403,+#_5a2171e178165b6f5eb36101d8811152p2@Casp8
3.01e-25FFCP PHASE1:Mm9::chr1:58852306..58852403,+#_5a2171e178165b6f5eb36101d8811152p2@Casp8
3.44e-25FFCP PHASE2:Hg19::chr5:134375415..134375475,-#_1d3215b8a108e1a4030df6775a65883fp1@ENST00000511256
3.44e-25FFCP PHASE1:Hg19::chr5:134375415..134375475,-#_1d3215b8a108e1a4030df6775a65883fp1@ENST00000511256
3.48e-25FFCP PHASE1:Mm9::chr9:110782790..110782819,+#_f17bc665dd90337b38f26c8abdcca4a3p1@Als2cl
3.48e-25FFCP PHASE2:Mm9::chr9:110782790..110782819,+#_f17bc665dd90337b38f26c8abdcca4a3p1@Als2cl
4.22e-25FFCP PHASE2:Hg19::chr5:134369905..134369972,-#_c9b8af693cd4098d22d09acafc312570p1@PITX1
4.22e-25FFCP PHASE1:Hg19::chr5:134369905..134369972,-#_c9b8af693cd4098d22d09acafc312570p1@PITX1
4.79e-25FFCP PHASE2:Mm9::chr6:7795251..7795299,+#_f52f42b8b5c5e94630e99a80aa0dcbe3p1@C1galt1
4.79e-25FFCP PHASE1:Mm9::chr6:7795251..7795299,+#_f52f42b8b5c5e94630e99a80aa0dcbe3p1@C1galt1
4.88e-25FFCP PHASE1:Mm9::chr1:37722539..37722560,-#_f585ebdf0286d3fdb8ee816f79befc54p@chr1:37722539..37722560, -
4.88e-25FFCP PHASE2:Mm9::chr1:37722539..37722560,-#_f585ebdf0286d3fdb8ee816f79befc54p@chr1:37722539..37722560, -
5.1e-25FFCP PHASE1:Mm9::chr4:124428852..124428893,+#_252d05bd4eedb6994a450b4d34ce4cdbp1@Inpp5b
5.1e-25FFCP PHASE2:Mm9::chr4:124428852..124428893,+#_252d05bd4eedb6994a450b4d34ce4cdbp1@Inpp5b
5.74e-25FFCP PHASE1:Hg19::chr9:86571432..86571453,-#_64e436d0ec6e1176ed9e1e4ad9952f22p5@C9orf64
5.74e-25FFCP PHASE2:Hg19::chr9:86571432..86571453,-#_64e436d0ec6e1176ed9e1e4ad9952f22p5@C9orf64
5.77e-25FFCP PHASE2:Hg19::chr2:241544866..241544882,+#_38de73bef9abc6f33ea8aa3a2554c902p4@GPR35
5.77e-25FFCP PHASE1:Hg19::chr2:241544866..241544882,+#_38de73bef9abc6f33ea8aa3a2554c902p4@GPR35
5.83e-25FFCP PHASE1:Hg19::chr15:65337716..65337742,+#_7fe3e2c22570b9897e2a082e0032bef0p1@OSTBETA
5.83e-25FFCP PHASE2:Hg19::chr15:65337716..65337742,+#_7fe3e2c22570b9897e2a082e0032bef0p1@OSTBETA
6.58e-25FFCP PHASE2:Hg19::chr9:123812542..123812560,-#_13b158a159bbbd499093261d3277b2a9p1@C5
6.58e-25FFCP PHASE1:Hg19::chr9:123812542..123812560,-#_13b158a159bbbd499093261d3277b2a9p1@C5

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