UBERON:0009749: Difference between revisions
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|located_in= | |located_in= | ||
|name=limb mesenchyme | |name=limb mesenchyme | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002101 | |part_of=UBERON:0002101 | ||
Latest revision as of 18:06, 12 September 2014
| Name: | limb mesenchyme |
|---|---|
| Namespace: | FANTOM |
| Definition: | "the primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells." [MP:0011261] |
| Synonyms: | "limb mesoderm" RELATED [Geisha:syn] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003104(mesenchyme) |
|---|---|
| part_of: | UBERON:0002101(limb) |
Children
| is a: | UBERON:0003860 (hindlimb mesenchyme),UBERON:0010881 (limb cartilage element),UBERON:0010882 (limb bone pre-cartilage condensation) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009749 (limb mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_b49cdd3eccb816c29ec3df181b795b0b | p26@Myo18a |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_b49cdd3eccb816c29ec3df181b795b0b | p26@Myo18a |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_4cb7c9e083f30a1101ddafc1e16f6ec4 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_4cb7c9e083f30a1101ddafc1e16f6ec4 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_4cb7c9e083f30a1101ddafc1e16f6ec4 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_4cb7c9e083f30a1101ddafc1e16f6ec4 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_4cb7c9e083f30a1101ddafc1e16f6ec4 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_4cb7c9e083f30a1101ddafc1e16f6ec4 | p@chr8:75097542..75097549, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_fc113c199a4333d062935f020996fa6e | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_fc113c199a4333d062935f020996fa6e | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_4ace04ff76c4e23a48cbd136a37d3d2e | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_4ace04ff76c4e23a48cbd136a37d3d2e | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_9619f287df14e0487786f8d4f931eed5 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_9619f287df14e0487786f8d4f931eed5 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_9619f287df14e0487786f8d4f931eed5 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_9619f287df14e0487786f8d4f931eed5 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_9619f287df14e0487786f8d4f931eed5 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_9619f287df14e0487786f8d4f931eed5 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_9619f287df14e0487786f8d4f931eed5 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_9619f287df14e0487786f8d4f931eed5 | p@chr1:174140324..174140335, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_f748bbf6117223d9b4276fc9d1c72ca7 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_f748bbf6117223d9b4276fc9d1c72ca7 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_0c6dd23d127f074dc5b2e71d90ff927b | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_0c6dd23d127f074dc5b2e71d90ff927b | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_cc17dc5cabe903f55ecaaedab2a39962 | p3@Asb16 |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_cc17dc5cabe903f55ecaaedab2a39962 | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_451bc83e119215a25a8f07c186dd7cf1 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_451bc83e119215a25a8f07c186dd7cf1 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_8acdc23ae462b550d9ec59494874ef8b | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_8acdc23ae462b550d9ec59494874ef8b | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_14bad38b451ea17213ee2d1cc51dfc7b | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_14bad38b451ea17213ee2d1cc51dfc7b | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_94f2b481b07a888bd1001017cdd9d888 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_94f2b481b07a888bd1001017cdd9d888 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_91d9a4dd1c391c908a7859baf3c9d2c1 | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_91d9a4dd1c391c908a7859baf3c9d2c1 | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_91d9a4dd1c391c908a7859baf3c9d2c1 | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_91d9a4dd1c391c908a7859baf3c9d2c1 | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_38fcadab582aefaf1c6260ffda21b02f | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_38fcadab582aefaf1c6260ffda21b02f | p4@Lipc |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_38fcadab582aefaf1c6260ffda21b02f | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_38fcadab582aefaf1c6260ffda21b02f | p@chr11:75409652..75409664, + |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_1da7f08a575076be2b7d35bd3a1f6f73 | p6@Sp7 |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_1da7f08a575076be2b7d35bd3a1f6f73 | p6@Sp7 |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_fa28761bde65b17e2294d35f1dc1f2cf | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_fa28761bde65b17e2294d35f1dc1f2cf | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_fa28761bde65b17e2294d35f1dc1f2cf | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_fa28761bde65b17e2294d35f1dc1f2cf | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_baf290fa952e480f01c9b51f507a7986 | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_baf290fa952e480f01c9b51f507a7986 | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_19c64873ee2ce10a1a446ce308db7a34 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_19c64873ee2ce10a1a446ce308db7a34 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_19c64873ee2ce10a1a446ce308db7a34 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_19c64873ee2ce10a1a446ce308db7a34 | p@chr15:58649683..58649688, - |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_e37deb5b758db9bae4affec0c6ae0a31 | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_e37deb5b758db9bae4affec0c6ae0a31 | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_26f41ca1df9dc04206a76d89b0db87fe | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_26f41ca1df9dc04206a76d89b0db87fe | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_b8e9b2c8db568ccf7cde999e7d2aec86 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_b8e9b2c8db568ccf7cde999e7d2aec86 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_5a752a938ad809d20244b8f626adf179 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_5a752a938ad809d20244b8f626adf179 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_28bead26cd2c23329ed3467de1401f2c | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_28bead26cd2c23329ed3467de1401f2c | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_28bead26cd2c23329ed3467de1401f2c | p1@Msmp |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_28bead26cd2c23329ed3467de1401f2c | p@chr11:67056544..67056589, - |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_825d698b4d0d7dfdf6ed3fbe763d9dd3 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_825d698b4d0d7dfdf6ed3fbe763d9dd3 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_825d698b4d0d7dfdf6ed3fbe763d9dd3 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_825d698b4d0d7dfdf6ed3fbe763d9dd3 | p@chrY:2858251..2858257, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_091d93d6d733c36a35642b101d77accf | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_091d93d6d733c36a35642b101d77accf | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_149e21d0c33b1b11e2de92537196b265 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_149e21d0c33b1b11e2de92537196b265 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_428a5837b748872592901bf7623e5cee | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_428a5837b748872592901bf7623e5cee | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_652eb9d73c9a1ee6aed17b8c1d2e313e | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_652eb9d73c9a1ee6aed17b8c1d2e313e | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_7967814a08579c865342c392a4b08bac | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_7967814a08579c865342c392a4b08bac | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_2e65e1f28748a57b90180966e907d951 | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_2e65e1f28748a57b90180966e907d951 | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_1160f2b02c6062560ed26fd32d76ac18 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_1160f2b02c6062560ed26fd32d76ac18 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_1160f2b02c6062560ed26fd32d76ac18 | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_1160f2b02c6062560ed26fd32d76ac18 | p@chr7:133592162..133592188, - |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_5c696be91a45cec00cd538c3d431c0c7 | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_5c696be91a45cec00cd538c3d431c0c7 | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_1464a5c5e2ca50b1167e81817b7bbe14 | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_1464a5c5e2ca50b1167e81817b7bbe14 | p1@Mepe |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_f01ecd0bca127b05ec34e673659d8695 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_f01ecd0bca127b05ec34e673659d8695 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_f01ecd0bca127b05ec34e673659d8695 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_f01ecd0bca127b05ec34e673659d8695 | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_5b807db699a08fedcd42b169b92bb0bb | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_5b807db699a08fedcd42b169b92bb0bb | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_5b807db699a08fedcd42b169b92bb0bb | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_5b807db699a08fedcd42b169b92bb0bb | p5@Col11a2 |
| 1.36e-25 | FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_d56ecbd61eacbc515743d772125a5f9e | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_d56ecbd61eacbc515743d772125a5f9e | p@chr2:180890942..180890956, - |
