UBERON:0010708: Difference between revisions
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|located_in= | |located_in= | ||
|name=pectoral complex | |name=pectoral complex | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 18:09, 12 September 2014
| Name: | pectoral complex | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle." [VSAO:0000213] | ||
| Xrefs: |
| ||
| Synonyms: |
"pectoral girdle plus anterior limb or fin" EXACT [UBERON:cjm] "pectoral girdle plus pectoral limb or fin" EXACT [UBERON:cjm] "upper limb" RELATED INCONSISTENT [FMA:7183] | ||
| Comments: | AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region) |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010707(appendage girdle complex) |
|---|
Children
| part of: | UBERON:0001467 (shoulder),UBERON:0002102 (forelimb),UBERON:0004710 (pectoral appendage) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10286-104F7 (Skin - palm, donor1)
- 10314-104I8
- 10342-105C9
- 1063-29H9 (accessory axillary lymph node, adult)
- 1517-43C4 (forelimb, embryo E17)
- 1520-43B5 (forelimb, embryo E18)
- 335-25E2 (forelimb, embryo E11)
- 359-14H2 (forelimb, embryo E12)
- 384-1E2 (forelimb, embryo E13)
... further results Mouse (Mus musculus)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10286-104F7 (Skin - palm, donor1)
- 10314-104I8
- 10342-105C9
- 1063-29H9 (accessory axillary lymph node, adult)
- 1517-43C4 (forelimb, embryo E17)
- 1520-43B5 (forelimb, embryo E18)
- 335-25E2 (forelimb, embryo E11)
- 359-14H2 (forelimb, embryo E12)
- 384-1E2 (forelimb, embryo E13)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010708 (pectoral complex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.4e-76 | FFCP PHASE2:Mm9::chr2:74499300..74499309,-#_cd31931a0915ba08cb345e7f80a0ce6a | p5@Evx2 |
| 7.4e-76 | FFCP PHASE1:Mm9::chr2:74499300..74499309,-#_cd31931a0915ba08cb345e7f80a0ce6a | p5@Evx2 |
| 3.71e-65 | FFCP PHASE2:Mm9::chr5:120256413..120256428,-#_ae0f5faea4b5ac1d66a74038317be8bc | p@chr5:120256413..120256428, - |
| 3.71e-65 | FFCP PHASE2:Mm9::chr2:165983686..165983720,-#_ae0f5faea4b5ac1d66a74038317be8bc | p@chr2:165983686..165983720, - |
| 3.71e-65 | FFCP PHASE1:Mm9::chr5:120256413..120256428,-#_ae0f5faea4b5ac1d66a74038317be8bc | p@chr5:120256413..120256428, - |
| 3.71e-65 | FFCP PHASE1:Mm9::chr15:51484092..51484121,-#_ae0f5faea4b5ac1d66a74038317be8bc | p@chr15:51484092..51484121, - |
| 3.71e-65 | FFCP PHASE2:Mm9::chr15:51484092..51484121,-#_ae0f5faea4b5ac1d66a74038317be8bc | p@chr15:51484092..51484121, - |
| 3.71e-65 | FFCP PHASE1:Mm9::chr2:165983686..165983720,-#_ae0f5faea4b5ac1d66a74038317be8bc | p@chr2:165983686..165983720, - |
| 6.0e-54 | FFCP PHASE2:Mm9::chr2:74505324..74505330,+#_e94231df1e5e8eac2999d14b979f2da1 | p@chr2:74505324..74505330, + |
| 6.0e-54 | FFCP PHASE1:Mm9::chr2:74505324..74505330,+#_e94231df1e5e8eac2999d14b979f2da1 | p@chr2:74505324..74505330, + |
| 1.03e-53 | FFCP PHASE1:Mm9::chr2:74506264..74506286,+#_d088d67746ef1108c2f4c46a60147ffc | p1@Hoxd13 |
| 1.03e-53 | FFCP PHASE2:Mm9::chr2:74506264..74506286,+#_d088d67746ef1108c2f4c46a60147ffc | p1@Hoxd13 |
| 9.59e-46 | FFCP PHASE1:Mm9::chr2:74513064..74513089,+#_6375ed29c996f964c15fc55be0bc55f4 | p2@Hoxd12 |
| 9.59e-46 | FFCP PHASE2:Mm9::chr2:74513064..74513089,+#_6375ed29c996f964c15fc55be0bc55f4 | p2@Hoxd12 |
| 1.19e-45 | FFCP PHASE2:Mm9::chr2:74499251..74499258,-#_d51c3c10c158aabfb91270874622613a | p4@Evx2 |
| 1.19e-45 | FFCP PHASE1:Mm9::chr2:74499251..74499258,-#_d51c3c10c158aabfb91270874622613a | p4@Evx2 |
| 1.46e-45 | FFCP PHASE1:Mm9::chr2:33574246..33574257,-#_ced3f231d071d6d3636ab5676c7ea61e | p3@ENSMUST00000130532 |
| 1.46e-45 | FFCP PHASE2:Mm9::chr2:33574246..33574257,-#_ced3f231d071d6d3636ab5676c7ea61e | p3@ENSMUST00000130532 |
| 6.68e-44 | FFCP PHASE1:Mm9::chr2:74521516..74521525,+#_b99f52eca1b0c38e58c6a6b85f4eccb2 | p1@ENSMUST00000136302 |
| 6.68e-44 | FFCP PHASE2:Mm9::chr2:74521516..74521525,+#_b99f52eca1b0c38e58c6a6b85f4eccb2 | p1@ENSMUST00000136302 |
| 1.41e-43 | FFCP PHASE2:Mm9::chr6:51009701..51009744,-#_7e01f3fb1d0ae08083bbc6a675d03e32 | p@chr6:51009701..51009744, - |
| 1.41e-43 | FFCP PHASE1:Mm9::chr6:51009701..51009744,-#_7e01f3fb1d0ae08083bbc6a675d03e32 | p@chr6:51009701..51009744, - |
| 3.38e-42 | FFCP PHASE1:Mm9::chr10:97069737..97069749,+#_45b13f3390fb2dd5ea751aedc7ef472d | p5@Kera |
| 3.38e-42 | FFCP PHASE2:Mm9::chr10:97069737..97069749,+#_45b13f3390fb2dd5ea751aedc7ef472d | p5@Kera |
| 5.12e-42 | FFCP PHASE1:Mm9::chr6:52210816..52210831,-#_00a5d7434e7f74388abf4166bafbecee | p2@Hoxa13 |
| 5.12e-42 | FFCP PHASE2:Mm9::chr6:52210816..52210831,-#_00a5d7434e7f74388abf4166bafbecee | p2@Hoxa13 |
| 6.76e-42 | FFCP PHASE1:Mm9::chr2:74513149..74513159,+#_a3f5acfece1c723cfc4b42e087a0368a | p@chr2:74513149..74513159, + |
| 6.76e-42 | FFCP PHASE2:Mm9::chr2:74513149..74513159,+#_a3f5acfece1c723cfc4b42e087a0368a | p@chr2:74513149..74513159, + |
| 4.36e-39 | FFCP PHASE1:Mm9::chr1:165288513..165288518,+#_5629bea49dc0337e06fafb210b65a11f | p@chr1:165288513..165288518, + |
| 4.36e-39 | FFCP PHASE2:Mm9::chr1:165288513..165288518,+#_5629bea49dc0337e06fafb210b65a11f | p@chr1:165288513..165288518, + |
| 3.47e-36 | FFCP PHASE1:Mm9::chr1:164064835..164064864,-#_c8abdc1329f57083af4f24db9250f57d | p3@Dnm3 |
| 3.47e-36 | FFCP PHASE2:Mm9::chr1:164064835..164064864,-#_c8abdc1329f57083af4f24db9250f57d | p3@Dnm3 |
| 2.38e-35 | FFCP PHASE1:Mm9::chr2:33574267..33574279,-#_34ced7242a499335d1238ace35b58874 | p1@ENSMUST00000130532 |
| 2.38e-35 | FFCP PHASE2:Mm9::chr2:33574267..33574279,-#_34ced7242a499335d1238ace35b58874 | p1@ENSMUST00000130532 |
| 2.91e-35 | FFCP PHASE2:Mm9::chr2:33574309..33574319,-#_f27fabef94c26571d657a317ce1b540e | p4@ENSMUST00000130532 |
| 2.91e-35 | FFCP PHASE1:Mm9::chr2:33574309..33574319,-#_f27fabef94c26571d657a317ce1b540e | p4@ENSMUST00000130532 |
| 4.64e-34 | FFCP PHASE2:Mm9::chr6:52195000..52195013,+#_d220a6ed62bc42d0afa033b4c2227a22 | p3@Hoxa11as |
| 4.64e-34 | FFCP PHASE1:Mm9::chr6:52195000..52195013,+#_d220a6ed62bc42d0afa033b4c2227a22 | p3@Hoxa11as |
| 2.45e-33 | FFCP PHASE1:Mm9::chr2:74512009..74512012,+#_1b6f5d811974161740b64a28ed32121d | p@chr2:74512009..74512012, + |
| 2.45e-33 | FFCP PHASE2:Mm9::chr2:74512009..74512012,+#_1b6f5d811974161740b64a28ed32121d | p@chr2:74512009..74512012, + |
| 4.67e-31 | FFCP PHASE2:Mm9::chr2:33496847..33496857,+#_bee8f69b76a7edddb6952cd27814df34 | p3@ENSMUST00000147294, p3@uc008jia.1 |
| 4.67e-31 | FFCP PHASE1:Mm9::chr2:33496847..33496857,+#_bee8f69b76a7edddb6952cd27814df34 | p3@ENSMUST00000147294, p3@uc008jia.1 |
| 1.91e-30 | FFCP PHASE2:Mm9::chr13:89680110..89680115,+#_402db87b1684a04712589c9da544be9d | p6@Hapln1 |
| 1.91e-30 | FFCP PHASE1:Mm9::chr13:89680110..89680115,+#_402db87b1684a04712589c9da544be9d | p6@Hapln1 |
| 5.75e-30 | FFCP PHASE2:Mm9::chr9:96754986..96754989,-#_3cb382833a8dd81b031812294e3fa3b6 | p3@Acpl2 |
| 5.75e-30 | FFCP PHASE1:Mm9::chr9:96754986..96754989,-#_3cb382833a8dd81b031812294e3fa3b6 | p3@Acpl2 |
| 8.69e-30 | FFCP PHASE2:Mm9::chr8:23734491..23734495,+#_dfd8f6a1a0273e708d516358d4930b3c | p1@Dkk4 |
| 8.69e-30 | FFCP PHASE1:Mm9::chr8:23734491..23734495,+#_dfd8f6a1a0273e708d516358d4930b3c | p1@Dkk4 |
| 1.03e-29 | FFCP PHASE1:Mm9::chr2:155770985..155770995,-#_b8ae6c4228686768ed69d930062f9cfc | p2@Gdf5 |
| 1.03e-29 | FFCP PHASE2:Mm9::chr2:155770985..155770995,-#_b8ae6c4228686768ed69d930062f9cfc | p2@Gdf5 |
| 2.39e-29 | FFCP PHASE1:Mm9::chr18:80910310..80910329,-#_6e0047ee7f7e8b7eb828212f7f0d02a3 | p@chr18:80910310..80910329, - |
| 2.39e-29 | FFCP PHASE2:Mm9::chr18:80910310..80910329,-#_6e0047ee7f7e8b7eb828212f7f0d02a3 | p@chr18:80910310..80910329, - |
| 2.61e-28 | FFCP PHASE2:Mm9::chr6:52210774..52210787,-#_b52e12fea54ac53daf82998067091d2b | p1@Hoxa13 |
| 2.61e-28 | FFCP PHASE1:Mm9::chr6:52210774..52210787,-#_b52e12fea54ac53daf82998067091d2b | p1@Hoxa13 |
| 5.76e-28 | FFCP PHASE2:Mm9::chr2:33498116..33498124,+#_389c5906cb9ee4197018f0f1ce703753 | p@chr2:33498116..33498124, + |
| 5.76e-28 | FFCP PHASE1:Mm9::chr2:33498116..33498124,+#_389c5906cb9ee4197018f0f1ce703753 | p@chr2:33498116..33498124, + |
| 6.54e-28 | FFCP PHASE2:Mm9::chr2:33496574..33496588,+#_3af9a2c82f9d0b5ad3cb6714dd2a5620 | p4@ENSMUST00000152118, p4@uc008jhz.1 |
| 6.54e-28 | FFCP PHASE1:Mm9::chr2:33496574..33496588,+#_3af9a2c82f9d0b5ad3cb6714dd2a5620 | p4@ENSMUST00000152118, p4@uc008jhz.1 |
| 8.91e-27 | FFCP PHASE1:Mm9::chr2:74520075..74520087,+#_a1a923b5967ec61f9bb8f0fef14d5ee1 | p6@Hoxd11 |
| 8.91e-27 | FFCP PHASE2:Mm9::chr2:74520075..74520087,+#_a1a923b5967ec61f9bb8f0fef14d5ee1 | p6@Hoxd11 |
| 1.7e-26 | FFCP PHASE2:Mm9::chr12:34649201..34649205,+#_ee888290dbe9de45527477da13ee1a38 | p@chr12:34649201..34649205, + |
| 1.7e-26 | FFCP PHASE1:Mm9::chr12:34649201..34649205,+#_ee888290dbe9de45527477da13ee1a38 | p@chr12:34649201..34649205, + |
| 9.51e-26 | FFCP PHASE2:Mm9::chr5:120285104..120285113,+#_869d73a648c6f5f3ba26a855fd0c5fde | p5@Tbx5 |
| 9.51e-26 | FFCP PHASE1:Mm9::chr5:120285104..120285113,+#_869d73a648c6f5f3ba26a855fd0c5fde | p5@Tbx5 |
| 1.47e-25 | FFCP PHASE2:Mm9::chr5:120246556..120246565,+#_3d12ec71a41cbf72b34de9131cece568 | p@chr5:120246556..120246565, + |
| 1.47e-25 | FFCP PHASE1:Mm9::chr5:120246556..120246565,+#_3d12ec71a41cbf72b34de9131cece568 | p@chr5:120246556..120246565, + |
| 2.19e-25 | FFCP PHASE1:Mm9::chr16:77329743..77329754,+#_da78341f794b47ff5c83f0f1213849c7 | p14@2810055G20Rik |
| 2.19e-25 | FFCP PHASE2:Mm9::chr16:77329743..77329754,+#_da78341f794b47ff5c83f0f1213849c7 | p14@2810055G20Rik |
| 2.39e-25 | FFCP PHASE2:Mm9::chr3:29912310..29912321,-#_a4bb984da50373bbd3515797435c14d0 | p23@Mecom |
| 2.39e-25 | FFCP PHASE1:Mm9::chr3:29912310..29912321,-#_a4bb984da50373bbd3515797435c14d0 | p23@Mecom |
| 2.58e-25 | FFCP PHASE2:Mm9::chr5:120246522..120246553,+#_398bef40181a0d395fe2849e6eb3a768 | p@chr5:120246522..120246553, + |
| 2.58e-25 | FFCP PHASE1:Mm9::chr5:120246522..120246553,+#_398bef40181a0d395fe2849e6eb3a768 | p@chr5:120246522..120246553, + |
| 2.13e-24 | FFCP PHASE1:Mm9::chr3:99044251..99044260,+#_799713071b8a0e9dda573beeadadfd68 | p8@Tbx15 |
| 2.13e-24 | FFCP PHASE2:Mm9::chr3:99044251..99044260,+#_799713071b8a0e9dda573beeadadfd68 | p8@Tbx15 |
| 1.18e-23 | FFCP PHASE2:Mm9::chr15:97807283..97807309,-#_34396d7b35dbdd9a9dc8092a990a774a | p@chr15:97807283..97807309, - |
| 1.18e-23 | FFCP PHASE1:Mm9::chr15:97807283..97807309,-#_34396d7b35dbdd9a9dc8092a990a774a | p@chr15:97807283..97807309, - |
| 1.35e-23 | FFCP PHASE2:Mm9::chr1:165244244..165244254,-#_ca4c280b373c83a40d781caeb30f5709 | p8@Prrx1 |
| 1.35e-23 | FFCP PHASE1:Mm9::chr1:165244244..165244254,-#_ca4c280b373c83a40d781caeb30f5709 | p8@Prrx1 |
| 2.8e-23 | FFCP PHASE2:Mm9::chr5:42155277..42155281,-#_06815d3a2a509447f848be9d674238e5 | p2@Nkx3-2 |
| 2.8e-23 | FFCP PHASE1:Mm9::chr5:42155277..42155281,-#_06815d3a2a509447f848be9d674238e5 | p2@Nkx3-2 |
| 3.72e-23 | FFCP PHASE1:Mm9::chr16:95807232..95807250,-#_64ed2bb0f17e15926c5a23514b5f9327 | p@chr16:95807232..95807250, - |
| 3.72e-23 | FFCP PHASE2:Mm9::chr16:95807232..95807250,-#_64ed2bb0f17e15926c5a23514b5f9327 | p@chr16:95807232..95807250, - |
| 8.41e-23 | FFCP PHASE2:Mm9::chr3:86116124..86116132,+#_474012b704b079ab3605f1e99600231a | p@chr3:86116124..86116132, + |
| 8.41e-23 | FFCP PHASE1:Mm9::chr3:86116124..86116132,+#_474012b704b079ab3605f1e99600231a | p@chr3:86116124..86116132, + |
| 8.41e-23 | FFCP PHASE2:Mm9::chr3:37606335..37606337,-#_474012b704b079ab3605f1e99600231a | p@chr3:37606335..37606337, - |
| 8.41e-23 | FFCP PHASE1:Mm9::chr4:125973415..125973418,+#_474012b704b079ab3605f1e99600231a | p@chr4:125973415..125973418, + |
| 8.41e-23 | FFCP PHASE2:Mm9::chr4:125973415..125973418,+#_474012b704b079ab3605f1e99600231a | p@chr4:125973415..125973418, + |
| 8.41e-23 | FFCP PHASE1:Mm9::chr3:37606335..37606337,-#_474012b704b079ab3605f1e99600231a | p@chr3:37606335..37606337, - |
| 1.91e-22 | FFCP PHASE2:Mm9::chr17:68300324..68300336,-#_080057bc5f28f893db849ac4e140f7cc | p5@Arhgap28 |
| 1.91e-22 | FFCP PHASE1:Mm9::chr17:68300324..68300336,-#_080057bc5f28f893db849ac4e140f7cc | p5@Arhgap28 |
| 3.77e-22 | FFCP PHASE1:Mm9::chr7:75096968..75096978,+#_c7d3a2e7b658b94f1ef1b28e10ebe89e | p9@Igf1r |
| 3.77e-22 | FFCP PHASE2:Mm9::chr7:75096968..75096978,+#_c7d3a2e7b658b94f1ef1b28e10ebe89e | p9@Igf1r |
| 4.7e-22 | FFCP PHASE1:Mm9::chr15:101936581..101936594,+#_5f907b2be6bd575d131a757fa3ee667e | p@chr15:101936581..101936594, + |
| 4.7e-22 | FFCP PHASE2:Mm9::chr15:101936581..101936594,+#_5f907b2be6bd575d131a757fa3ee667e | p@chr15:101936581..101936594, + |
| 5.52e-22 | FFCP PHASE2:Mm9::chr17:23882313..23882330,-#_fcfe6a95b7fc4f5151c043b2c4e22b97 | p@chr17:23882313..23882330, - |
| 5.52e-22 | FFCP PHASE1:Mm9::chr17:23882313..23882330,-#_fcfe6a95b7fc4f5151c043b2c4e22b97 | p@chr17:23882313..23882330, - |
| 6.36e-22 | FFCP PHASE1:Mm9::chr2:155771018..155771042,-#_d2ca8ec67715918f31e1bce326ceda76 | p1@Gdf5 |
| 6.36e-22 | FFCP PHASE2:Mm9::chr2:155771018..155771042,-#_d2ca8ec67715918f31e1bce326ceda76 | p1@Gdf5 |
| 3.33e-21 | FFCP PHASE2:Mm9::chr15:77137392..77137399,-#_f80ac68d19b950805ab3f66ae280623f | p16@Rbfox2 |
| 3.33e-21 | FFCP PHASE1:Mm9::chr15:77137392..77137399,-#_f80ac68d19b950805ab3f66ae280623f | p16@Rbfox2 |
