Data source: Difference between revisions
From FANTOM5_SSTAR
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=== Motifs === | === Motifs === | ||
* Novel motifs GREAT analysis results | * Novel motifs GREAT analysis results | ||
** [http://fantom.gsc.riken.jp/5/datafiles/ | ** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_GREAT_analysis_results/hg19.table.txt Human] | ||
** [http://fantom.gsc.riken.jp/5/datafiles/ | ** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_GREAT_analysis_results/mm9.table.txt Mouse] | ||
* Novel motifs Significance of the correlation with CAGE expression | * Novel motifs Significance of the correlation with CAGE expression | ||
** [http://fantom.gsc.riken.jp/5/datafiles/ | ** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_Significance_of_the_correlation_with_CAGE_expression/hg19.pvalues.txt Human] | ||
** [http://fantom.gsc.riken.jp/5/datafiles/ | ** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_Significance_of_the_correlation_with_CAGE_expression/mm9.pvalues.txt Mouse] | ||
* Jaspar motifs Significance of the correlation with CAGE expression | * Jaspar motifs Significance of the correlation with CAGE expression | ||
** [http://fantom.gsc.riken.jp/5/datafiles/ | ** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/jaspar_Significance_of_the_correlation_with_CAGE_expression/hg19.pvalues.txt Human] | ||
** [http://fantom.gsc.riken.jp/5/datafiles/ | ** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/jaspar_Significance_of_the_correlation_with_CAGE_expression/mm9.pvalues.txt Mouse] | ||
=== Sample === | === Sample === | ||
Revision as of 16:56, 12 February 2015
Data sources used in FANTOM5 SSTAR
CAGE peaks
- CAGE peak location (with the robust threshold) , annotation, and expression
- Ontology-based sample term enrichment analysis
Genes
- Gene details (obtained from EntrezGene)
Coexpression module
- FFCP member list
- Sample ontology enrichment analysis
- GOStat results on Coexpression module
- Pathway enrichment analysis
- TFBS overrepresentation
- ENCODE_TF_ChIP-seq_peak enrichment analysis
- Relative expression of the co-expression module
Motifs
- Novel motifs GREAT analysis results
- Novel motifs Significance of the correlation with CAGE expression
- Jaspar motifs Significance of the correlation with CAGE expression
Sample
- sample name and attributes
- Transcription factors, relative expression
- HOMER motifs
- Repeat family, relative expression
