FFCP PHASE1:Hg19::chr1:153534013..153534025,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:153534013..153534025,+ | |||
|coexpression_cluster_id=C688 | |coexpression_cluster_id=C688 | ||
|description=CAGE_peak_at_chr1:153534013..153534025,+ | |description=CAGE_peak_at_chr1:153534013..153534025,+ | ||
Latest revision as of 21:44, 27 July 2015
| Short description: | p@chr1:153534013..153534025, + |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr1:153534013..153534025, + |
| Coexpression cluster: | C688_Bronchial_Tracheal_Corneal_Prostate_Urothelial_Mallassezderived_Sebocyte |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p@chr1:153534013..153534025+ |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endo-epithelial cell | 2.86e-29 | 42 |
| gingival epithelial cell | 3.94e-28 | 3 |
| bronchial epithelial cell | 6.24e-28 | 3 |
| epithelial cell of tracheobronchial tree | 2.72e-25 | 9 |
| epithelial cell of lower respiratory tract | 2.72e-25 | 9 |
| respiratory epithelial cell | 7.76e-25 | 13 |
| general ecto-epithelial cell | 6.14e-23 | 14 |
| endodermal cell | 1.12e-20 | 58 |
| corneal epithelial cell | 2.61e-19 | 2 |
| duct epithelial cell | 2.97e-13 | 3 |
Showing 1 to 10 of 31 entries
| Ontology term | p-value | n |
|---|---|---|
| gingival epithelium | 3.94e-28 | 3 |
| lower respiratory tract epithelium | 6.24e-28 | 3 |
| epithelium of bronchus | 6.24e-28 | 3 |
| bronchus | 5.02e-17 | 5 |
| tracheobronchial tree | 3.73e-15 | 15 |
| lower respiratory tract | 3.73e-15 | 15 |
| surface structure | 2.48e-13 | 99 |
| respiratory system | 3.86e-13 | 74 |
| head | 6.64e-12 | 56 |
| respiratory system epithelium | 2.41e-11 | 28 |
Showing 1 to 10 of 43 entries
| Ontology term | p-value | n |
|---|---|---|
| skin squamous cell carcinoma | 4.75e-10 | 1 |
| keratoacanthoma | 4.75e-10 | 1 |
Showing 1 to 2 of 2 entries
