FFCP PHASE1:Hg19::chr1:223537475..223537547,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=55061 | |EntrezGene=entrezgene:55061 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=25470 | |HGNC=HGNC:25470 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=Q5VX72,Q5VX71,B7Z369,B3KTY0 | |UniProt=uniprot:Q5VX72,uniprot:Q5VX71,uniprot:B7Z369,uniprot:B3KTY0 | ||
|association_with_transcript=0bp_to_ENST00000271787,ENST00000344029,ENST00000366877,ENST00000366878,ENST00000494793,ENST00000542750,NM_001037175,NM_017982,uc001hny.3,uc001hnz.2,uc010puw.1,uc010pux.1_5end | |association_with_transcript=0bp_to_ENST00000271787,ENST00000344029,ENST00000366877,ENST00000366878,ENST00000494793,ENST00000542750,NM_001037175,NM_017982,uc001hny.3,uc001hnz.2,uc010puw.1,uc010pux.1_5end | ||
|cluster_id=chr1:223537475..223537547,- | |||
|coexpression_cluster_id=C3 | |coexpression_cluster_id=C3 | ||
|description=CAGE_peak_1_at_SUSD4_5end | |description=CAGE_peak_1_at_SUSD4_5end | ||
Revision as of 04:19, 28 July 2015
| Short description: | p1@SUSD4 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_SUSD4_5end |
| Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
| Association with transcript: | 0bp_to_ENST00000271787, ENST00000344029, ENST00000366877, ENST00000366878, ENST00000494793, ENST00000542750, NM_001037175, NM_017982, uc001hny.3, uc001hnz.2, uc010puw.1, uc010pux.1_5end |
| EntrezGene: | 55061 |
| HGNC: | 25470 |
| UniProt: | Q5VX72Q5VX71B7Z369B3KTY0 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@SUSD4 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| adult organism | 1.20e-56 | 114 |
| neural tube | 1.43e-48 | 56 |
| neural rod | 1.43e-48 | 56 |
| future spinal cord | 1.43e-48 | 56 |
| neural keel | 1.43e-48 | 56 |
| regional part of nervous system | 6.14e-46 | 53 |
| regional part of brain | 6.14e-46 | 53 |
| regional part of forebrain | 1.01e-40 | 41 |
| forebrain | 1.01e-40 | 41 |
| anterior neural tube | 1.01e-40 | 41 |
Showing 1 to 10 of 58 entries
