FFCP PHASE1:Hg19::chr5:155754113..155754123,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=6444 | |EntrezGene=entrezgene:6444 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=10807 | |HGNC=HGNC:10807 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=E5RI34 | |UniProt=uniprot:E5RI34 | ||
|association_with_transcript=155bp_to_ENST00000524347_5end | |association_with_transcript=155bp_to_ENST00000524347_5end | ||
|cluster_id=chr5:155754113..155754123,+ | |||
|coexpression_cluster_id=C4479 | |coexpression_cluster_id=C4479 | ||
|description=CAGE_peak_4_at_SGCD_5end | |description=CAGE_peak_4_at_SGCD_5end | ||
Revision as of 12:13, 30 July 2015
| Short description: | p4@SGCD |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_4_at_SGCD_5end |
| Coexpression cluster: | C4479_Fibroblast_basal_normal_Chondrocyte_heart_diaphragm_tongue |
| Association with transcript: | 155bp_to_ENST00000524347_5end |
| EntrezGene: | 6444 |
| HGNC: | 10807 |
| UniProt: | E5RI34 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p4@SGCD |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| skin fibroblast | 3.71e-17 | 23 |
| fibroblast | 8.84e-12 | 76 |
| GAG secreting cell | 4.09e-11 | 9 |
| carbohydrate secreting cell | 4.09e-11 | 9 |
| extracellular matrix secreting cell | 4.69e-10 | 15 |
| stromal cell | 5.15e-10 | 28 |
| chondroblast | 2.53e-09 | 6 |
| chondrocyte | 2.53e-09 | 6 |
| fat cell | 4.03e-07 | 15 |
Showing 1 to 9 of 9 entries
| Ontology term | p-value | n |
|---|---|---|
| skin of body | 2.95e-17 | 41 |
| integument | 9.62e-15 | 46 |
| integumental system | 9.62e-15 | 46 |
| surface structure | 3.98e-12 | 99 |
Showing 1 to 4 of 4 entries
| Ontology term | p-value | n |
|---|---|---|
| musculoskeletal system disease | 2.33e-12 | 5 |
| myotonic disease | 2.33e-12 | 5 |
| muscle tissue disease | 2.33e-12 | 5 |
| myopathy | 2.33e-12 | 5 |
| muscular disease | 2.33e-12 | 5 |
| myotonic dystrophy | 2.33e-12 | 5 |
Showing 1 to 6 of 6 entries
